Wall clock time and date at job start Sat Apr 11 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32158 * 119.99551 * 2 1 4 4 C 1.32127 * 119.99438 * 180.27389 * 3 2 1 5 5 C 1.38392 * 119.99947 * 359.73492 * 4 3 2 6 6 N 1.32121 * 119.99523 * 359.97438 * 5 4 3 7 7 C 1.32152 * 120.00360 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99983 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47144 * 89.99460 * 8 7 6 10 10 N 1.46500 * 109.47128 * 179.97438 * 9 8 7 11 11 C 1.34774 * 120.00119 * 180.02562 * 10 9 8 12 12 O 1.21282 * 120.00304 * 0.02562 * 11 10 9 13 13 C 1.50704 * 120.00135 * 180.02562 * 11 10 9 14 14 C 1.50699 * 109.47208 * 180.02562 * 13 11 10 15 15 C 1.38328 * 119.96230 * 269.97915 * 14 13 11 16 16 C 1.38281 * 120.13505 * 180.02562 * 15 14 13 17 17 C 1.38120 * 120.06679 * 359.68445 * 16 15 14 18 18 C 1.38852 * 119.93490 * 0.58817 * 17 16 15 19 19 O 1.35752 * 120.07221 * 179.70368 * 18 17 16 20 20 C 1.34829 * 116.99954 * 354.17311 * 19 18 17 21 21 H 1.07998 * 119.99999 * 5.03596 * 20 19 18 22 22 C 1.38656 * 119.99670 * 185.03445 * 20 19 18 23 23 N 1.31550 * 120.00275 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99668 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47010 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46908 * 119.99967 * 24 22 20 27 27 H 1.48504 * 109.47373 * 240.00300 * 24 22 20 28 28 C 1.38073 * 119.96534 * 89.99715 * 14 13 11 29 29 H 1.08998 * 109.47377 * 270.24393 * 1 2 3 30 30 H 1.09001 * 109.47506 * 30.24611 * 1 2 3 31 31 H 1.09000 * 109.47206 * 150.24592 * 1 2 3 32 32 H 1.07999 * 119.99577 * 179.75566 * 4 3 2 33 33 H 1.08000 * 119.99898 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.46571 * 329.99696 * 8 7 6 35 35 H 1.08998 * 109.47190 * 210.00143 * 8 7 6 36 36 H 1.09008 * 109.46644 * 60.00215 * 9 8 7 37 37 H 1.08998 * 109.47635 * 300.00411 * 9 8 7 38 38 H 0.97001 * 119.99420 * 0.02562 * 10 9 8 39 39 H 1.09002 * 109.46571 * 59.99894 * 13 11 10 40 40 H 1.08992 * 109.46782 * 300.00158 * 13 11 10 41 41 H 1.08001 * 119.93314 * 0.02562 * 15 14 13 42 42 H 1.07993 * 119.96315 * 179.97438 * 16 15 14 43 43 H 1.08006 * 120.03715 * 180.31908 * 17 16 15 44 44 H 0.96999 * 119.99936 * 179.97438 * 23 22 20 45 45 H 1.07996 * 120.03547 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1446 0.0000 4 6 3.4889 1.1446 -0.0055 5 6 4.1809 -0.0540 -0.0057 6 7 3.5202 -1.1981 0.0002 7 6 2.1987 -1.1980 0.0056 8 6 1.4451 -2.5031 0.0117 9 6 1.1962 -2.9416 1.4562 10 7 0.4631 -4.2100 1.4620 11 6 0.1305 -4.7907 2.6319 12 8 0.4377 -4.2631 3.6798 13 6 -0.6231 -6.0958 2.6379 14 6 -0.8695 -6.5270 4.0607 15 6 0.0552 -7.3244 4.7109 16 6 -0.1675 -7.7226 6.0163 17 6 -1.3115 -7.3196 6.6770 18 6 -2.2443 -6.5240 6.0252 19 8 -3.3726 -6.1313 6.6701 20 6 -3.5861 -6.6454 7.8980 21 1 -2.8369 -7.2720 8.3590 22 6 -4.7678 -6.3697 8.5691 23 7 -5.6806 -5.6069 8.0075 24 14 -5.0640 -7.0825 10.2701 25 1 -3.8927 -7.9009 10.6747 26 1 -5.2551 -5.9774 11.2435 27 1 -6.2793 -7.9355 10.2447 28 6 -2.0181 -6.1262 4.7137 29 1 -0.3634 0.0044 1.0276 30 1 -0.3634 0.8878 -0.5176 31 1 -0.3633 -0.8922 -0.5100 32 1 4.0289 2.0799 -0.0095 33 1 5.2609 -0.0540 -0.0097 34 1 2.0321 -3.2639 -0.5030 35 1 0.4906 -2.3739 -0.4985 36 1 0.6092 -2.1808 1.9708 37 1 2.1507 -3.0708 1.9663 38 1 0.2171 -4.6318 0.6239 39 1 -0.0359 -6.8567 2.1237 40 1 -1.5773 -5.9666 2.1274 41 1 0.9529 -7.6365 4.1980 42 1 0.5560 -8.3454 6.5211 43 1 -1.4826 -7.6267 7.6983 44 1 -6.5073 -5.4143 8.4768 45 1 -2.7399 -5.5043 4.2053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294213781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:08 Heat of formation + Delta-G solvation = -25.155940 kcal Electronic energy + Delta-G solvation = -27429.721253 eV Core-core repulsion = 23411.718065 eV Total energy + Delta-G solvation = -4018.003188 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.22550 -41.10188 -40.35973 -38.23844 -36.86353 -35.52335 -34.58050 -34.33118 -33.43714 -31.12715 -30.70734 -29.05077 -28.34864 -27.25354 -25.61769 -23.95737 -23.29352 -23.00360 -22.63857 -21.43463 -19.50057 -18.91085 -18.80046 -18.06075 -17.42394 -17.08323 -16.86788 -16.64790 -16.28425 -16.14978 -16.08953 -15.95228 -15.48686 -15.21636 -14.84643 -14.65920 -14.33148 -14.29085 -13.95684 -13.88814 -13.62096 -13.58816 -13.34916 -13.03552 -12.97533 -12.75855 -12.62158 -12.47866 -12.35837 -12.22293 -12.17428 -12.07898 -11.97093 -11.19537 -10.99393 -10.79855 -10.12096 -10.06569 -10.04430 -9.61906 -8.96526 -8.46814 -6.15060 -0.25589 0.10285 0.53658 0.77055 1.33967 1.42762 1.52717 1.70063 2.15814 2.18257 2.65677 2.85441 3.10241 3.18145 3.21690 3.45900 3.46658 3.71950 3.83490 3.92284 4.00765 4.12193 4.19598 4.21100 4.30521 4.33797 4.41295 4.48321 4.55880 4.60258 4.69155 4.70314 4.70697 4.75704 4.92320 4.96395 5.08634 5.13091 5.14359 5.32589 5.42582 5.46390 5.66537 5.74215 5.76985 6.03661 6.25260 6.29964 6.61399 6.78976 6.97921 7.34117 7.79837 8.76968 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016782 B = 0.001850 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.028205 B =15127.659873 C =15991.631571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.073 3.927 3 N -0.468 5.468 4 C 0.049 3.951 5 C 0.041 3.959 6 N -0.455 5.455 7 C 0.070 3.930 8 C -0.069 4.069 9 C 0.134 3.866 10 N -0.712 5.712 11 C 0.514 3.486 12 O -0.583 6.583 13 C -0.090 4.090 14 C -0.027 4.027 15 C -0.181 4.181 16 C -0.076 4.076 17 C -0.248 4.248 18 C 0.110 3.890 19 O -0.234 6.234 20 C -0.413 4.413 21 H 0.099 0.901 22 C -0.025 4.025 23 N -0.921 5.921 24 Si 1.020 2.980 25 H -0.253 1.253 26 H -0.269 1.269 27 H -0.265 1.265 28 C -0.192 4.192 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.200 0.800 33 H 0.201 0.799 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.423 0.577 39 H 0.146 0.854 40 H 0.127 0.873 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.116 0.884 44 H 0.272 0.728 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.892 5.813 -22.676 29.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.066 4.066 3 N -0.184 5.184 4 C -0.111 4.111 5 C -0.119 4.119 6 N -0.170 5.170 7 C -0.071 4.071 8 C -0.107 4.107 9 C 0.009 3.991 10 N -0.367 5.367 11 C 0.301 3.699 12 O -0.462 6.462 13 C -0.129 4.129 14 C -0.027 4.027 15 C -0.200 4.200 16 C -0.094 4.094 17 C -0.267 4.267 18 C 0.060 3.940 19 O -0.141 6.141 20 C -0.489 4.489 21 H 0.117 0.883 22 C -0.222 4.222 23 N -0.560 5.560 24 Si 0.839 3.161 25 H -0.176 1.176 26 H -0.194 1.194 27 H -0.190 1.190 28 C -0.211 4.211 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.124 0.876 32 H 0.217 0.783 33 H 0.217 0.783 34 H 0.124 0.876 35 H 0.141 0.859 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.261 0.739 39 H 0.164 0.836 40 H 0.145 0.855 41 H 0.165 0.835 42 H 0.162 0.838 43 H 0.134 0.866 44 H 0.081 0.919 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 17.741 6.427 -21.976 28.965 hybrid contribution -0.362 0.110 0.894 0.971 sum 17.379 6.537 -21.081 28.092 Atomic orbital electron populations 1.20907 0.86400 1.05292 1.03969 1.22494 0.99560 0.88981 0.95607 1.68357 1.10311 1.29769 1.09939 1.24351 0.90292 1.01414 0.95050 1.24309 1.03426 0.88148 0.96045 1.68280 1.08631 1.31254 1.08858 1.22019 0.90745 0.96586 0.97766 1.20705 1.01601 0.92498 0.95895 1.21025 0.95802 0.85621 0.96669 1.45697 1.58285 1.23862 1.08861 1.20987 0.78765 0.86828 0.83304 1.90769 1.55572 1.65990 1.33825 1.20713 1.03478 0.94962 0.93724 1.19238 0.92249 0.95494 0.95748 1.20995 1.00522 1.02979 0.95460 1.21131 0.95344 0.97878 0.95007 1.21288 0.97719 1.06189 1.01504 1.19904 0.87480 0.93760 0.92841 1.83933 1.36881 1.62494 1.30822 1.21854 1.04479 1.31520 0.91077 0.88323 1.26610 0.93885 0.97108 1.04623 1.70191 1.08413 1.37119 1.40274 0.84514 0.79235 0.78100 0.74224 1.17601 1.19418 1.19012 1.20250 1.01100 1.07063 0.92710 0.90118 0.89876 0.87561 0.78278 0.78256 0.87573 0.85947 0.92993 0.93529 0.73862 0.83590 0.85532 0.83498 0.83844 0.86607 0.91859 0.87317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.78 71.24 0.70 -0.63 16 2 C 0.07 1.25 6.78 42.53 0.29 1.54 16 3 N -0.47 -8.70 10.42 -183.29 -1.91 -10.61 16 4 C 0.05 0.65 11.23 84.69 0.95 1.60 16 5 C 0.04 0.53 11.23 84.69 0.95 1.48 16 6 N -0.46 -8.11 10.42 -183.30 -1.91 -10.02 16 7 C 0.07 1.14 6.04 42.54 0.26 1.40 16 8 C -0.07 -0.76 5.24 29.85 0.16 -0.60 16 9 C 0.13 2.39 5.66 86.38 0.49 2.88 16 10 N -0.71 -11.39 5.56 -463.06 -2.57 -13.96 16 11 C 0.51 13.29 7.82 87.66 0.69 13.98 16 12 O -0.58 -22.66 16.03 -3.04 -0.05 -22.71 16 13 C -0.09 -1.95 5.83 29.10 0.17 -1.79 16 14 C -0.03 -0.93 4.37 -19.88 -0.09 -1.01 16 15 C -0.18 -6.00 9.70 22.30 0.22 -5.78 16 16 C -0.08 -2.81 10.04 22.25 0.22 -2.59 16 17 C -0.25 -11.62 9.17 22.39 0.21 -11.42 16 18 C 0.11 5.85 6.65 22.58 0.15 6.00 16 19 O -0.23 -14.83 9.76 -22.74 -0.22 -15.05 16 20 C -0.41 -25.15 9.49 67.92 0.64 -24.51 16 21 H 0.10 5.57 5.21 -2.91 -0.02 5.55 16 22 C -0.03 -1.48 5.49 84.83 0.47 -1.02 16 23 N -0.92 -58.15 13.67 21.61 0.30 -57.85 16 24 Si 1.02 44.39 29.55 68.60 2.03 46.41 16 25 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 27 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 28 C -0.19 -8.67 9.65 22.39 0.22 -8.45 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.11 0.74 5.95 -2.39 -0.01 0.73 16 32 H 0.20 1.15 8.06 -2.91 -0.02 1.12 16 33 H 0.20 1.14 8.06 -2.91 -0.02 1.11 16 34 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.12 0.66 5.94 -2.39 -0.01 0.65 16 36 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.42 2.89 8.47 -92.71 -0.79 2.10 16 39 H 0.15 1.88 8.09 -2.39 -0.02 1.86 16 40 H 0.13 2.18 8.08 -2.39 -0.02 2.16 16 41 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 42 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 43 H 0.12 5.51 5.64 -2.91 -0.02 5.49 16 44 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 45 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -92.13 387.58 2.59 -89.54 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.25 Total: 23.17 kcal Atomic # 6 Polarization: -35.60 SS G_CDS: 6.68 Total: -28.92 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -6.10 Total: -92.45 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -0.27 Total: -37.75 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -92.13 2.59 -89.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294213781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.384 kcal (2) G-P(sol) polarization free energy of solvation -92.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds