Wall clock time and date at job start Sat Apr 11 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35906 * 117.00190 * 2 1 4 4 C 1.38754 * 120.05319 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94691 * 179.72568 * 4 3 2 6 6 C 1.50697 * 119.97339 * 180.02562 * 5 4 3 7 7 C 1.38288 * 120.05274 * 0.02562 * 5 4 3 8 8 C 1.38243 * 120.11206 * 359.97438 * 7 5 4 9 9 C 1.38167 * 120.05854 * 0.02562 * 8 7 5 10 10 C 1.50694 * 120.03332 * 180.02562 * 9 8 7 11 11 N 1.46500 * 109.47399 * 259.99864 * 10 9 8 12 12 S 1.65600 * 120.00576 * 164.99845 * 11 10 9 13 13 O 1.42101 * 104.27921 * 181.07110 * 12 11 10 14 14 O 1.42106 * 104.27453 * 308.92659 * 12 11 10 15 15 C 1.81400 * 104.44939 * 64.99463 * 12 11 10 16 16 C 1.52998 * 109.46781 * 179.97438 * 15 12 11 17 17 C 1.53000 * 109.47472 * 300.00264 * 16 15 12 18 18 C 1.52998 * 109.47220 * 60.00705 * 16 15 12 19 19 C 1.50698 * 109.46717 * 180.02562 * 16 15 12 20 20 H 1.07999 * 120.00432 * 357.69996 * 19 16 15 21 21 C 1.37883 * 120.00078 * 177.69513 * 19 16 15 22 22 N 1.31509 * 119.99600 * 6.58488 * 21 19 16 23 23 Si 1.86801 * 120.00032 * 186.58102 * 21 19 16 24 24 H 1.48499 * 109.47022 * 84.99755 * 23 21 19 25 25 H 1.48505 * 109.46825 * 204.99638 * 23 21 19 26 26 H 1.48493 * 109.47315 * 324.99678 * 23 21 19 27 27 H 1.08996 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46772 * 299.99832 * 1 2 3 29 29 H 1.09002 * 109.46759 * 59.99481 * 1 2 3 30 30 H 1.08004 * 120.02848 * 359.69516 * 4 3 2 31 31 H 1.09000 * 109.47574 * 89.99367 * 6 5 4 32 32 H 1.09000 * 109.46832 * 209.99508 * 6 5 4 33 33 H 1.08994 * 109.46920 * 329.99168 * 6 5 4 34 34 H 1.07993 * 119.94543 * 180.02562 * 7 5 4 35 35 H 1.07996 * 119.97363 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.46923 * 19.99366 * 10 9 8 37 37 H 1.09005 * 109.47502 * 139.99409 * 10 9 8 38 38 H 0.97005 * 119.99384 * 344.99470 * 11 10 9 39 39 H 1.08994 * 109.47299 * 300.00332 * 15 12 11 40 40 H 1.09001 * 109.46643 * 60.00643 * 15 12 11 41 41 H 1.08990 * 109.46935 * 66.67222 * 17 16 15 42 42 H 1.09000 * 109.46942 * 186.67132 * 17 16 15 43 43 H 1.08993 * 109.47010 * 306.66962 * 17 16 15 44 44 H 1.09004 * 109.47206 * 59.99486 * 18 16 15 45 45 H 1.08994 * 109.47251 * 179.97438 * 18 16 15 46 46 H 1.09004 * 109.46754 * 299.99689 * 18 16 15 47 47 H 0.97000 * 119.99763 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9208 3.6048 0.0063 6 6 1.1019 4.8698 0.0074 7 6 3.3019 3.6758 0.0109 8 6 4.0559 2.5172 0.0104 9 6 3.4312 1.2849 0.0047 10 6 4.2537 0.0222 0.0047 11 7 4.3248 -0.5144 -1.3566 12 16 5.4497 -1.6697 -1.7337 13 8 5.2416 -1.9235 -3.1163 14 8 6.6775 -1.1295 -1.2647 15 6 4.9684 -3.1107 -0.7425 16 6 5.9433 -4.2599 -1.0066 17 6 5.9082 -4.6275 -2.4914 18 6 7.3592 -3.8262 -0.6219 19 6 5.5431 -5.4572 -0.1836 20 1 4.7022 -5.3922 0.4910 21 6 6.2505 -6.6358 -0.2918 22 7 7.3497 -6.6791 -1.0126 23 14 5.6476 -8.1709 0.5853 24 1 4.6424 -8.8622 -0.2614 25 1 6.7943 -9.0808 0.8351 26 1 5.0268 -7.7900 1.8794 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2128 2.3204 -0.0040 31 1 0.9010 5.1717 1.0353 32 1 1.6532 5.6600 -0.5022 33 1 0.1591 4.6927 -0.5101 34 1 3.7922 4.6381 0.0158 35 1 5.1343 2.5753 0.0136 36 1 5.2598 0.2440 0.3607 37 1 3.7898 -0.7137 0.6616 38 1 3.7128 -0.1930 -2.0372 39 1 4.9930 -2.8487 0.3152 40 1 3.9599 -3.4199 -1.0169 41 1 6.3096 -3.8023 -3.0795 42 1 6.5109 -5.5200 -2.6591 43 1 4.8791 -4.8220 -2.7933 44 1 7.3842 -3.5644 0.4359 45 1 8.0536 -4.6451 -0.8097 46 1 7.6484 -2.9603 -1.2175 47 1 7.8475 -7.5081 -1.0884 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296469491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:38 Heat of formation + Delta-G solvation = -93.749293 kcal Electronic energy + Delta-G solvation = -28391.193678 eV Core-core repulsion = 24473.367259 eV Total energy + Delta-G solvation = -3917.826419 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.55176 -37.85517 -36.47181 -36.21794 -35.58735 -35.17417 -32.44041 -31.63241 -30.35231 -28.41339 -27.46136 -26.54930 -25.67145 -25.19359 -24.34386 -22.48420 -21.26014 -19.55620 -18.67156 -17.85413 -17.24292 -16.63654 -16.37280 -15.97722 -15.77858 -15.31604 -15.17431 -14.69717 -14.50981 -14.35305 -14.20291 -13.94706 -13.51073 -13.22726 -12.92815 -12.81620 -12.48427 -12.45513 -12.43802 -12.19169 -11.95190 -11.76604 -11.58643 -11.35078 -11.18777 -11.13669 -11.00429 -10.93344 -10.85886 -10.65115 -10.34519 -10.26072 -10.04902 -9.61746 -9.55778 -9.14921 -9.01110 -8.64582 -8.35025 -8.34060 -6.00643 -4.11755 0.84141 1.13741 1.22344 3.06186 3.25757 3.28310 3.35084 3.36849 3.60920 4.34774 4.38229 4.44959 4.53761 4.69376 4.79108 4.89531 4.89662 4.91134 5.01716 5.24118 5.24161 5.26928 5.31211 5.33038 5.46312 5.49300 5.58640 5.75408 5.78286 5.87286 5.98196 6.14477 6.25196 6.35027 6.44959 6.56800 6.74549 6.83722 6.96385 7.08334 7.16500 7.25088 7.36116 7.53622 7.71318 8.01923 8.14347 8.37863 8.86654 9.53030 11.00508 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018242 B = 0.002909 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.531714 B = 9623.778617 C =10440.280092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.146 3.854 4 C -0.213 4.213 5 C -0.046 4.046 6 C -0.116 4.116 7 C -0.161 4.161 8 C -0.059 4.059 9 C -0.131 4.131 10 C 0.167 3.833 11 N -1.123 6.123 12 S 2.595 3.405 13 O -0.967 6.967 14 O -0.966 6.966 15 C -0.582 4.582 16 C 0.082 3.918 17 C -0.161 4.161 18 C -0.164 4.164 19 C -0.501 4.501 20 H 0.059 0.941 21 C 0.064 3.936 22 N -0.883 5.883 23 Si 0.895 3.105 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.275 1.275 27 H 0.102 0.898 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.128 0.872 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.124 0.876 35 H 0.135 0.865 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.411 0.589 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.026 0.974 42 H 0.093 0.907 43 H 0.035 0.965 44 H 0.036 0.964 45 H 0.097 0.903 46 H 0.027 0.973 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.596 19.930 3.235 24.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.219 6.219 3 C 0.099 3.901 4 C -0.232 4.232 5 C -0.046 4.046 6 C -0.172 4.172 7 C -0.179 4.179 8 C -0.078 4.078 9 C -0.134 4.134 10 C 0.041 3.959 11 N -0.880 5.880 12 S 2.693 3.307 13 O -0.957 6.957 14 O -0.956 6.956 15 C -0.715 4.715 16 C 0.080 3.920 17 C -0.219 4.219 18 C -0.222 4.222 19 C -0.540 4.540 20 H 0.077 0.923 21 C -0.138 4.138 22 N -0.521 5.521 23 Si 0.723 3.277 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.200 1.200 27 H 0.120 0.880 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.146 0.854 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.142 0.858 35 H 0.153 0.847 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.244 0.756 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.045 0.955 42 H 0.112 0.888 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.115 0.885 46 H 0.046 0.954 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.512 19.680 2.712 23.478 hybrid contribution -1.434 -0.863 0.696 1.813 sum -13.946 18.817 3.408 23.669 Atomic orbital electron populations 1.23092 0.78408 1.04264 1.01136 1.86166 1.21260 1.26355 1.88139 1.18877 0.91679 0.84395 0.95108 1.21074 0.99876 0.91739 1.10524 1.19726 0.94031 0.94492 0.96379 1.20818 0.99347 0.94607 1.02457 1.20939 0.93088 0.98499 1.05366 1.21022 1.00361 0.90777 0.95647 1.19214 0.90447 0.95653 1.08042 1.19958 0.99682 0.92582 0.83681 1.55834 1.55786 1.58478 1.17872 1.05545 0.73862 0.75751 0.75587 1.93550 1.85591 1.85484 1.31091 1.93530 1.42089 1.77215 1.82738 1.30521 1.11004 1.16533 1.13451 1.17922 0.89548 0.90128 0.94438 1.22208 1.00928 1.03069 0.95667 1.22309 0.99954 1.00713 0.99206 1.20948 1.14549 0.94850 1.23696 0.92294 1.24940 0.94609 0.98795 0.95422 1.69815 1.15112 1.26830 1.40322 0.86570 0.78359 0.82913 0.79897 1.20590 1.21227 1.20023 0.87956 0.92728 0.92677 0.85431 0.90938 0.91249 0.91584 0.85760 0.84747 0.89533 0.90731 0.75635 0.86485 0.86239 0.95500 0.88795 0.94603 0.94508 0.88467 0.95403 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.47 9.73 -19.45 -0.19 -3.66 16 3 C 0.15 1.65 6.66 -39.22 -0.26 1.39 16 4 C -0.21 -2.02 8.69 -39.43 -0.34 -2.36 16 5 C -0.05 -0.40 5.88 -104.65 -0.62 -1.02 16 6 C -0.12 -0.69 10.01 36.00 0.36 -0.33 16 7 C -0.16 -1.48 9.70 -39.56 -0.38 -1.86 16 8 C -0.06 -0.63 9.67 -39.61 -0.38 -1.01 16 9 C -0.13 -1.57 5.29 -104.48 -0.55 -2.12 16 10 C 0.17 2.21 5.92 -5.20 -0.03 2.18 16 11 N -1.12 -16.76 5.88 -11.66 -0.07 -16.82 16 12 S 2.59 49.79 4.49 -107.50 -0.48 49.31 16 13 O -0.97 -21.04 15.84 -57.54 -0.91 -21.95 16 14 O -0.97 -20.66 15.12 -57.54 -0.87 -21.53 16 15 C -0.58 -11.67 5.01 37.16 0.19 -11.48 16 16 C 0.08 2.02 0.52 -155.66 -0.08 1.94 16 17 C -0.16 -4.04 7.58 37.16 0.28 -3.76 16 18 C -0.16 -4.11 7.80 37.16 0.29 -3.82 16 19 C -0.50 -13.32 8.01 -34.44 -0.28 -13.59 16 20 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 21 C 0.06 1.72 5.09 -17.82 -0.09 1.63 16 22 N -0.88 -24.35 9.39 55.43 0.52 -23.83 16 23 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 29 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 30 H 0.13 0.94 6.30 -52.48 -0.33 0.61 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.13 1.27 8.04 -52.49 -0.42 0.84 16 36 H 0.09 1.12 7.56 -51.93 -0.39 0.73 16 37 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 38 H 0.41 5.63 8.61 -34.47 -0.30 5.33 16 39 H 0.12 2.12 8.14 -51.93 -0.42 1.70 16 40 H 0.12 2.21 8.14 -51.92 -0.42 1.79 16 41 H 0.03 0.64 5.96 -51.93 -0.31 0.33 16 42 H 0.09 2.53 5.99 -51.93 -0.31 2.22 16 43 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.10 2.62 6.01 -51.93 -0.31 2.31 16 46 H 0.03 0.66 5.47 -51.93 -0.28 0.38 16 47 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 383.17 15.07 5.77 5.77 Total: -1.00 -33.14 383.17 -9.36 -42.49 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.20 Total: 7.46 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: -0.91 Total: -33.03 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.45 Total: -40.65 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -1.97 Total: -47.13 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 49.79 SS G_CDS: -0.48 Total: 49.31 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.14 -9.36 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296469491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.256 kcal (2) G-P(sol) polarization free energy of solvation -33.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds