Wall clock time and date at job start Sat Apr 11 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38165 * 120.02840 * 2 1 4 4 C 1.38249 * 120.05780 * 180.29903 * 3 2 1 5 5 C 1.38281 * 120.10986 * 359.67722 * 4 3 2 6 6 C 1.38130 * 120.05783 * 0.02562 * 5 4 3 7 7 C 1.38709 * 120.02948 * 179.68078 * 2 1 3 8 8 O 1.35896 * 120.05695 * 359.97438 * 7 2 1 9 9 C 1.42905 * 117.00039 * 179.72538 * 8 7 2 10 10 C 1.52999 * 109.46728 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.47177 * 65.00458 * 10 9 8 12 12 S 1.65602 * 120.00013 * 164.99610 * 11 10 9 13 13 O 1.42099 * 104.27461 * 181.06995 * 12 11 10 14 14 O 1.42101 * 104.27864 * 308.92496 * 12 11 10 15 15 C 1.81400 * 104.44927 * 64.99994 * 12 11 10 16 16 C 1.53001 * 109.47145 * 179.97438 * 15 12 11 17 17 C 1.52999 * 109.47120 * 300.00059 * 16 15 12 18 18 C 1.52998 * 109.47218 * 59.99777 * 16 15 12 19 19 C 1.50701 * 109.46976 * 179.97438 * 16 15 12 20 20 H 1.07998 * 120.00011 * 0.02562 * 19 16 15 21 21 C 1.37881 * 119.99716 * 179.97438 * 19 16 15 22 22 N 1.31519 * 119.99935 * 0.02562 * 21 19 16 23 23 Si 1.86795 * 119.99825 * 179.97438 * 21 19 16 24 24 H 1.48503 * 109.47146 * 60.00026 * 23 21 19 25 25 H 1.48499 * 109.47151 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47213 * 299.99880 * 23 21 19 27 27 H 1.08999 * 109.46852 * 270.31505 * 1 2 3 28 28 H 1.08994 * 109.46996 * 30.32390 * 1 2 3 29 29 H 1.08996 * 109.46797 * 150.32281 * 1 2 3 30 30 H 1.07999 * 119.97234 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.94326 * 179.70279 * 4 3 2 32 32 H 1.07996 * 119.97422 * 180.02562 * 5 4 3 33 33 H 1.07996 * 120.02919 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.47187 * 300.00222 * 9 8 7 35 35 H 1.09001 * 109.46558 * 60.00270 * 9 8 7 36 36 H 1.09000 * 109.46738 * 185.00163 * 10 9 8 37 37 H 1.08994 * 109.47465 * 305.00250 * 10 9 8 38 38 H 0.97001 * 119.99832 * 344.99528 * 11 10 9 39 39 H 1.09001 * 109.47334 * 299.99991 * 15 12 11 40 40 H 1.08997 * 109.47240 * 60.00094 * 15 12 11 41 41 H 1.08996 * 109.47449 * 59.99786 * 17 16 15 42 42 H 1.08998 * 109.47349 * 180.02562 * 17 16 15 43 43 H 1.08997 * 109.47168 * 299.99754 * 17 16 15 44 44 H 1.09008 * 109.47200 * 59.99767 * 18 16 15 45 45 H 1.09002 * 109.47456 * 180.02562 * 18 16 15 46 46 H 1.09005 * 109.47396 * 300.00362 * 18 16 15 47 47 H 0.96998 * 119.99535 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1969 -0.0062 5 6 4.2752 0.0011 -0.0058 6 6 3.5887 -1.1975 0.0004 7 6 2.2012 -1.2009 0.0067 8 8 1.5235 -2.3788 0.0138 9 6 2.3036 -3.5761 0.0143 10 6 1.3733 -4.7908 0.0233 11 7 0.6069 -4.8282 -1.2246 12 16 -0.1970 -6.2085 -1.6616 13 8 -0.7921 -5.8867 -2.9112 14 8 0.7830 -7.2323 -1.5589 15 6 -1.4692 -6.4146 -0.3850 16 6 -2.2898 -7.6716 -0.6811 17 6 -2.9587 -7.5333 -2.0501 18 6 -1.3684 -8.8930 -0.6848 19 6 -3.3463 -7.8432 0.3798 20 1 -3.4249 -7.1271 1.1844 21 6 -4.2132 -8.9138 0.3225 22 7 -4.1178 -9.7856 -0.6576 23 14 -5.5223 -9.1269 1.6379 24 1 -6.4164 -7.9412 1.6431 25 1 -6.3188 -10.3469 1.3505 26 1 -4.8720 -9.2625 2.9661 27 1 -0.3633 0.0057 1.0277 28 1 -0.3633 0.8870 -0.5188 29 1 -0.3633 -0.8928 -0.5088 30 1 1.6584 2.1315 -0.0004 31 1 4.1195 2.1331 -0.0111 32 1 5.3552 0.0042 -0.0102 33 1 4.1315 -2.1312 0.0012 34 1 2.9284 -3.6031 -0.8784 35 1 2.9364 -3.5970 0.9016 36 1 1.9657 -5.7014 0.1133 37 1 0.6886 -4.7178 0.8682 38 1 0.5703 -4.0444 -1.7950 39 1 -0.9927 -6.5128 0.5904 40 1 -2.1260 -5.5447 -0.3827 41 1 -2.1943 -7.4094 -2.8172 42 1 -3.5437 -8.4285 -2.2609 43 1 -3.6152 -6.6632 -2.0475 44 1 -0.8917 -8.9916 0.2905 45 1 -1.9529 -9.7885 -0.8962 46 1 -0.6039 -8.7692 -1.4519 47 1 -4.7279 -10.5385 -0.6980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296530023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:41 Heat of formation + Delta-G solvation = -94.056525 kcal Electronic energy + Delta-G solvation = -27926.662205 eV Core-core repulsion = 24008.822464 eV Total energy + Delta-G solvation = -3917.839741 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.51171 -37.96105 -36.56170 -36.27355 -35.39354 -35.10945 -33.03873 -31.66573 -30.41577 -29.01331 -26.94884 -26.62368 -25.71468 -25.22823 -23.90285 -21.96792 -21.52518 -19.64125 -18.88506 -18.32278 -17.36398 -16.72093 -16.28078 -15.96355 -15.92289 -15.51577 -15.30829 -14.78961 -14.68956 -14.48745 -14.11818 -13.61910 -13.40193 -13.30234 -12.99803 -12.92598 -12.53032 -12.50466 -12.49203 -12.21915 -12.08261 -11.63862 -11.54600 -11.43901 -11.23021 -11.12915 -11.05617 -11.00097 -10.91438 -10.70244 -10.40799 -10.27548 -10.11648 -9.66603 -9.64315 -9.28189 -9.11464 -8.68066 -8.39891 -8.37621 -6.03361 -4.15376 0.85654 1.03253 1.16829 2.86357 3.20713 3.26967 3.32511 3.34125 3.47486 4.27546 4.37080 4.42881 4.49970 4.62712 4.65644 4.78318 4.85686 4.92481 5.01528 5.07117 5.21761 5.25255 5.32862 5.42745 5.52054 5.53168 5.61037 5.65167 5.70038 5.92265 6.00495 6.05868 6.18103 6.25937 6.38166 6.52118 6.70466 6.79771 6.90635 7.01674 7.10438 7.16178 7.31683 7.50501 7.67799 7.98212 8.09574 8.33050 8.82928 9.49952 10.97921 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.002522 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.240220 B =11100.413211 C =11844.376163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.116 4.116 3 C -0.085 4.085 4 C -0.157 4.157 5 C -0.088 4.088 6 C -0.207 4.207 7 C 0.130 3.870 8 O -0.307 6.307 9 C 0.052 3.948 10 C 0.119 3.881 11 N -1.129 6.129 12 S 2.594 3.406 13 O -0.964 6.964 14 O -0.966 6.966 15 C -0.581 4.581 16 C 0.082 3.918 17 C -0.164 4.164 18 C -0.164 4.164 19 C -0.502 4.502 20 H 0.058 0.942 21 C 0.064 3.936 22 N -0.884 5.884 23 Si 0.896 3.104 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.277 1.277 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.415 0.585 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.028 0.972 42 H 0.095 0.905 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.095 0.905 46 H 0.028 0.972 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.662 18.649 2.659 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.117 4.117 3 C -0.103 4.103 4 C -0.176 4.176 5 C -0.106 4.106 6 C -0.226 4.226 7 C 0.085 3.915 8 O -0.220 6.220 9 C -0.024 4.024 10 C -0.007 4.007 11 N -0.887 5.887 12 S 2.692 3.308 13 O -0.954 6.954 14 O -0.956 6.956 15 C -0.715 4.715 16 C 0.080 3.920 17 C -0.222 4.222 18 C -0.221 4.221 19 C -0.542 4.542 20 H 0.076 0.924 21 C -0.138 4.138 22 N -0.522 5.522 23 Si 0.724 3.276 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.203 1.203 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.248 0.752 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.046 0.954 42 H 0.114 0.886 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.113 0.887 46 H 0.047 0.953 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.621 17.744 1.939 23.073 hybrid contribution -0.703 0.448 1.163 1.431 sum 13.918 18.192 3.102 23.114 Atomic orbital electron populations 1.20645 0.90291 1.03080 1.02479 1.19340 0.96745 0.90345 1.05237 1.20906 0.94136 0.96821 0.98458 1.21036 0.94248 0.98065 1.04211 1.20923 0.99752 0.91909 0.97988 1.21283 0.93000 0.99580 1.08693 1.18851 0.90375 0.85738 0.96547 1.86101 1.35581 1.12037 1.88315 1.23072 0.94217 0.82650 1.02500 1.21340 0.95013 0.97166 0.87211 1.55808 1.66910 1.33428 1.32524 1.05609 0.75924 0.72538 0.76748 1.93557 1.78570 1.82973 1.40290 1.93535 1.58589 1.55982 1.87449 1.30516 1.15134 1.10137 1.15702 1.17925 0.92524 0.86075 0.95487 1.22277 1.00812 1.03501 0.95600 1.22279 0.97795 1.03093 0.98973 1.20906 1.14363 1.09777 1.09122 0.92358 1.24941 0.97361 0.95658 0.95800 1.69794 1.37711 1.13639 1.31034 0.86593 0.81551 0.77529 0.81914 1.20279 1.21198 1.20294 0.91281 0.91706 0.90754 0.85485 0.86040 0.85938 0.85381 0.90955 0.90484 0.88069 0.90478 0.75179 0.86489 0.86163 0.95359 0.88649 0.94453 0.94489 0.88669 0.95321 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.79 36.01 0.35 -0.63 16 2 C -0.12 -1.16 5.89 -104.47 -0.62 -1.77 16 3 C -0.09 -0.72 9.70 -39.60 -0.38 -1.10 16 4 C -0.16 -1.24 10.04 -39.56 -0.40 -1.64 16 5 C -0.09 -0.71 10.04 -39.61 -0.40 -1.11 16 6 C -0.21 -1.87 9.04 -39.43 -0.36 -2.23 16 7 C 0.13 1.37 6.66 -39.22 -0.26 1.11 16 8 O -0.31 -3.31 8.98 -19.41 -0.17 -3.49 16 9 C 0.05 0.46 4.93 37.16 0.18 0.65 16 10 C 0.12 1.27 6.52 -4.04 -0.03 1.25 16 11 N -1.13 -15.00 5.85 -10.62 -0.06 -15.07 16 12 S 2.59 46.92 4.49 -107.50 -0.48 46.44 16 13 O -0.96 -20.15 15.70 -57.54 -0.90 -21.06 16 14 O -0.97 -19.58 15.12 -57.54 -0.87 -20.45 16 15 C -0.58 -11.12 5.01 37.16 0.19 -10.93 16 16 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 17 C -0.16 -4.05 7.78 37.16 0.29 -3.76 16 18 C -0.16 -3.98 7.77 37.16 0.29 -3.69 16 19 C -0.50 -13.11 8.01 -34.44 -0.28 -13.39 16 20 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 21 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 22 N -0.88 -24.07 9.35 55.43 0.52 -23.55 16 23 Si 0.90 20.60 29.54 -169.99 -5.02 15.57 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.07 0.75 7.53 -51.93 -0.39 0.36 16 30 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.13 0.94 6.30 -52.49 -0.33 0.61 16 34 H 0.07 0.60 7.66 -51.93 -0.40 0.20 16 35 H 0.08 0.52 7.66 -51.93 -0.40 0.12 16 36 H 0.10 1.02 7.69 -51.93 -0.40 0.62 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.41 5.05 8.47 -34.47 -0.29 4.76 16 39 H 0.12 1.98 8.14 -51.92 -0.42 1.56 16 40 H 0.12 2.12 8.14 -51.93 -0.42 1.70 16 41 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 42 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 43 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.04 0.85 8.14 -51.92 -0.42 0.42 16 45 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 46 H 0.03 0.66 5.47 -51.93 -0.28 0.37 16 47 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -32.52 382.76 -9.99 -42.51 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.17 Total: 7.06 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: -1.59 Total: -33.74 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.46 Total: -38.62 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -1.95 Total: -45.00 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 46.92 SS G_CDS: -0.48 Total: 46.44 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.52 -9.99 -42.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296530023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.544 kcal (2) G-P(sol) polarization free energy of solvation -32.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds