Wall clock time and date at job start Sat Apr 11 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38165 * 120.02840 * 2 1 4 4 C 1.38249 * 120.05780 * 180.29903 * 3 2 1 5 5 C 1.38281 * 120.10986 * 359.67722 * 4 3 2 6 6 C 1.38130 * 120.05783 * 0.02562 * 5 4 3 7 7 C 1.38709 * 120.02948 * 179.68078 * 2 1 3 8 8 O 1.35896 * 120.05695 * 359.97438 * 7 2 1 9 9 C 1.42905 * 117.00039 * 179.72538 * 8 7 2 10 10 C 1.52999 * 109.46728 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.47177 * 65.00458 * 10 9 8 12 12 S 1.65602 * 120.00013 * 164.99610 * 11 10 9 13 13 O 1.42099 * 104.27461 * 181.06995 * 12 11 10 14 14 O 1.42101 * 104.27864 * 308.92496 * 12 11 10 15 15 C 1.81400 * 104.44927 * 64.99994 * 12 11 10 16 16 C 1.53001 * 109.47145 * 179.97438 * 15 12 11 17 17 C 1.52999 * 109.47120 * 300.00059 * 16 15 12 18 18 C 1.52998 * 109.47218 * 59.99777 * 16 15 12 19 19 C 1.50701 * 109.46976 * 179.97438 * 16 15 12 20 20 H 1.07998 * 120.00011 * 0.02562 * 19 16 15 21 21 C 1.37881 * 119.99716 * 179.97438 * 19 16 15 22 22 N 1.31519 * 119.99935 * 0.02562 * 21 19 16 23 23 Si 1.86795 * 119.99825 * 179.97438 * 21 19 16 24 24 H 1.48503 * 109.47146 * 60.00026 * 23 21 19 25 25 H 1.48499 * 109.47151 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47213 * 299.99880 * 23 21 19 27 27 H 1.08999 * 109.46852 * 270.31505 * 1 2 3 28 28 H 1.08994 * 109.46996 * 30.32390 * 1 2 3 29 29 H 1.08996 * 109.46797 * 150.32281 * 1 2 3 30 30 H 1.07999 * 119.97234 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.94326 * 179.70279 * 4 3 2 32 32 H 1.07996 * 119.97422 * 180.02562 * 5 4 3 33 33 H 1.07996 * 120.02919 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.47187 * 300.00222 * 9 8 7 35 35 H 1.09001 * 109.46558 * 60.00270 * 9 8 7 36 36 H 1.09000 * 109.46738 * 185.00163 * 10 9 8 37 37 H 1.08994 * 109.47465 * 305.00250 * 10 9 8 38 38 H 0.97001 * 119.99832 * 344.99528 * 11 10 9 39 39 H 1.09001 * 109.47334 * 299.99991 * 15 12 11 40 40 H 1.08997 * 109.47240 * 60.00094 * 15 12 11 41 41 H 1.08996 * 109.47449 * 59.99786 * 17 16 15 42 42 H 1.08998 * 109.47349 * 180.02562 * 17 16 15 43 43 H 1.08997 * 109.47168 * 299.99754 * 17 16 15 44 44 H 1.09008 * 109.47200 * 59.99767 * 18 16 15 45 45 H 1.09002 * 109.47456 * 180.02562 * 18 16 15 46 46 H 1.09005 * 109.47396 * 300.00362 * 18 16 15 47 47 H 0.96998 * 119.99535 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1969 -0.0062 5 6 4.2752 0.0011 -0.0058 6 6 3.5887 -1.1975 0.0004 7 6 2.2012 -1.2009 0.0067 8 8 1.5235 -2.3788 0.0138 9 6 2.3036 -3.5761 0.0143 10 6 1.3733 -4.7908 0.0233 11 7 0.6069 -4.8282 -1.2246 12 16 -0.1970 -6.2085 -1.6616 13 8 -0.7921 -5.8867 -2.9112 14 8 0.7830 -7.2323 -1.5589 15 6 -1.4692 -6.4146 -0.3850 16 6 -2.2898 -7.6716 -0.6811 17 6 -2.9587 -7.5333 -2.0501 18 6 -1.3684 -8.8930 -0.6848 19 6 -3.3463 -7.8432 0.3798 20 1 -3.4249 -7.1271 1.1844 21 6 -4.2132 -8.9138 0.3225 22 7 -4.1178 -9.7856 -0.6576 23 14 -5.5223 -9.1269 1.6379 24 1 -6.4164 -7.9412 1.6431 25 1 -6.3188 -10.3469 1.3505 26 1 -4.8720 -9.2625 2.9661 27 1 -0.3633 0.0057 1.0277 28 1 -0.3633 0.8870 -0.5188 29 1 -0.3633 -0.8928 -0.5088 30 1 1.6584 2.1315 -0.0004 31 1 4.1195 2.1331 -0.0111 32 1 5.3552 0.0042 -0.0102 33 1 4.1315 -2.1312 0.0012 34 1 2.9284 -3.6031 -0.8784 35 1 2.9364 -3.5970 0.9016 36 1 1.9657 -5.7014 0.1133 37 1 0.6886 -4.7178 0.8682 38 1 0.5703 -4.0444 -1.7950 39 1 -0.9927 -6.5128 0.5904 40 1 -2.1260 -5.5447 -0.3827 41 1 -2.1943 -7.4094 -2.8172 42 1 -3.5437 -8.4285 -2.2609 43 1 -3.6152 -6.6632 -2.0475 44 1 -0.8917 -8.9916 0.2905 45 1 -1.9529 -9.7885 -0.8962 46 1 -0.6039 -8.7692 -1.4519 47 1 -4.7279 -10.5385 -0.6980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296530023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:40 Heat of formation + Delta-G solvation = -114.630002 kcal Electronic energy + Delta-G solvation = -27927.554338 eV Core-core repulsion = 24008.822464 eV Total energy + Delta-G solvation = -3918.731874 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.17006 -38.65010 -38.11398 -38.09377 -36.90237 -36.14855 -33.68002 -33.62122 -31.09141 -29.83096 -28.28625 -27.67573 -27.59494 -27.23695 -24.66290 -22.62478 -22.20323 -21.37687 -20.30235 -19.04864 -18.77723 -17.88341 -17.66866 -17.06960 -16.83588 -16.63401 -16.55349 -16.47479 -15.69319 -15.35960 -15.01913 -14.89456 -14.64694 -14.41327 -14.27996 -14.01673 -13.94300 -13.80278 -13.61019 -13.13746 -13.09953 -13.00342 -12.88605 -12.85816 -12.79119 -12.50940 -12.45092 -12.18719 -12.16567 -12.14786 -11.95576 -11.87927 -11.67922 -11.54965 -11.35642 -10.70422 -10.40198 -10.32484 -9.73608 -9.03582 -8.02119 -6.20620 -0.59680 0.40963 0.52873 1.45713 1.46148 1.53274 1.88513 2.22846 2.44823 2.84820 2.86156 3.19981 3.32833 3.68969 3.89160 3.96679 4.01976 4.10501 4.19449 4.24144 4.30297 4.40830 4.44619 4.50088 4.61657 4.64746 4.79270 4.81447 4.84098 4.86380 4.88309 4.94091 5.01548 5.01831 5.10381 5.35193 5.40309 5.44260 5.52347 5.56198 5.64277 5.65572 5.92187 5.99063 6.06822 6.13226 6.35404 6.48341 6.84056 7.47529 8.97478 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.002522 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.240220 B =11100.413211 C =11844.376163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.138 4.138 3 C -0.092 4.092 4 C -0.161 4.161 5 C -0.094 4.094 6 C -0.215 4.215 7 C 0.108 3.892 8 O -0.323 6.323 9 C 0.052 3.948 10 C 0.107 3.893 11 N -1.114 6.114 12 S 2.617 3.383 13 O -0.995 6.995 14 O -0.988 6.988 15 C -0.586 4.586 16 C 0.069 3.931 17 C -0.161 4.161 18 C -0.160 4.160 19 C -0.517 4.517 20 H 0.063 0.937 21 C 0.017 3.983 22 N -0.908 5.908 23 Si 0.954 3.046 24 H -0.273 1.273 25 H -0.288 1.288 26 H -0.271 1.271 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.422 0.578 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.033 0.967 42 H 0.071 0.929 43 H 0.038 0.962 44 H 0.042 0.958 45 H 0.069 0.931 46 H 0.034 0.966 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.014 20.541 3.953 26.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.139 4.139 3 C -0.109 4.109 4 C -0.179 4.179 5 C -0.112 4.112 6 C -0.234 4.234 7 C 0.063 3.937 8 O -0.237 6.237 9 C -0.024 4.024 10 C -0.019 4.019 11 N -0.876 5.876 12 S 2.714 3.286 13 O -0.985 6.985 14 O -0.977 6.977 15 C -0.719 4.719 16 C 0.067 3.933 17 C -0.219 4.219 18 C -0.218 4.218 19 C -0.556 4.556 20 H 0.081 0.919 21 C -0.182 4.182 22 N -0.547 5.547 23 Si 0.780 3.220 24 H -0.198 1.198 25 H -0.214 1.214 26 H -0.196 1.196 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.163 0.837 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.257 0.743 39 H 0.158 0.842 40 H 0.153 0.847 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.088 0.912 46 H 0.052 0.948 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.971 19.642 3.240 25.522 hybrid contribution -1.042 -0.060 0.762 1.292 sum 14.929 19.582 4.001 24.947 Atomic orbital electron populations 1.20622 0.90244 1.02940 1.02482 1.19599 0.97166 0.90982 1.06146 1.21191 0.94724 0.97067 0.97962 1.21386 0.94221 0.99100 1.03213 1.21276 1.01019 0.91668 0.97203 1.21529 0.92614 1.00733 1.08530 1.19093 0.91159 0.85718 0.97745 1.86060 1.36391 1.12552 1.88695 1.23137 0.93795 0.81416 1.04056 1.21681 0.95567 0.98598 0.86025 1.55362 1.66248 1.32172 1.33779 1.04640 0.75351 0.72921 0.75720 1.93507 1.79330 1.83644 1.42046 1.93501 1.58948 1.57731 1.87567 1.30454 1.15583 1.08292 1.17542 1.17917 0.92822 0.88091 0.94465 1.22220 1.00776 1.02289 0.96630 1.22205 0.97672 1.02433 0.99442 1.21271 1.14918 1.09762 1.09669 0.91891 1.25679 0.99332 0.95644 0.97585 1.69941 1.38345 1.13967 1.32399 0.85680 0.79254 0.77292 0.79783 1.19849 1.21387 1.19621 0.91226 0.90430 0.92254 0.83719 0.83821 0.83748 0.83976 0.90298 0.87989 0.87236 0.89260 0.74262 0.84212 0.84739 0.94869 0.91063 0.94292 0.93850 0.91184 0.94751 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.79 71.24 0.70 -1.16 16 2 C -0.14 -2.62 5.89 -19.77 -0.12 -2.74 16 3 C -0.09 -1.39 9.70 22.26 0.22 -1.18 16 4 C -0.16 -2.16 10.04 22.28 0.22 -1.94 16 5 C -0.09 -1.29 10.04 22.25 0.22 -1.07 16 6 C -0.22 -3.48 9.04 22.37 0.20 -3.28 16 7 C 0.11 2.14 6.66 22.51 0.15 2.29 16 8 O -0.32 -6.53 8.98 -92.39 -0.83 -7.36 16 9 C 0.05 0.82 4.93 71.98 0.36 1.17 16 10 C 0.11 2.04 6.52 86.38 0.56 2.60 16 11 N -1.11 -27.80 5.85 -187.50 -1.10 -28.90 16 12 S 2.62 92.02 4.49 -56.49 -0.25 91.77 16 13 O -0.99 -41.25 15.70 -127.65 -2.00 -43.25 16 14 O -0.99 -39.09 15.12 -127.65 -1.93 -41.02 16 15 C -0.59 -21.65 5.01 71.98 0.36 -21.29 16 16 C 0.07 3.30 0.52 -52.93 -0.03 3.28 16 17 C -0.16 -8.05 7.78 71.98 0.56 -7.49 16 18 C -0.16 -7.81 7.77 71.98 0.56 -7.25 16 19 C -0.52 -26.75 8.01 25.60 0.21 -26.55 16 20 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 21 C 0.02 0.90 5.15 84.66 0.44 1.33 16 22 N -0.91 -50.27 9.35 21.45 0.20 -50.07 16 23 Si 0.95 42.06 29.54 68.60 2.03 44.09 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 29 H 0.06 1.19 7.53 -2.39 -0.02 1.17 16 30 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 31 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 32 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 33 H 0.14 1.74 6.30 -2.91 -0.02 1.72 16 34 H 0.08 1.12 7.66 -2.39 -0.02 1.11 16 35 H 0.10 1.10 7.66 -2.39 -0.02 1.08 16 36 H 0.11 1.94 7.69 -2.39 -0.02 1.92 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.42 9.70 8.47 -96.74 -0.82 8.88 16 39 H 0.14 4.44 8.14 -2.39 -0.02 4.42 16 40 H 0.13 4.54 8.14 -2.39 -0.02 4.52 16 41 H 0.03 1.58 5.46 -2.39 -0.01 1.56 16 42 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 43 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 46 H 0.03 1.59 5.47 -2.38 -0.01 1.58 16 47 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -69.57 382.76 0.87 -68.70 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 0.16 Total: 29.33 kcal Atomic # 6 Polarization: -67.88 SS G_CDS: 4.61 Total: -63.27 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -0.90 Total: -78.97 kcal Atomic # 8 Polarization: -86.87 SS G_CDS: -4.76 Total: -91.63 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 16 Polarization: 92.02 SS G_CDS: -0.25 Total: 91.77 kcal Total: -69.57 0.87 -68.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296530023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.932 kcal (2) G-P(sol) polarization free energy of solvation -69.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds