Wall clock time and date at job start Sat Apr 11 2020 06:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32962 * 126.00417 * 2 1 4 4 C 1.31800 * 109.77468 * 180.17554 * 3 2 1 5 5 C 1.47825 * 125.51051 * 179.82598 * 4 3 2 6 6 C 1.39600 * 120.14542 * 179.67613 * 5 4 3 7 7 C 1.37936 * 119.85365 * 180.02562 * 6 5 4 8 8 C 1.38383 * 120.14108 * 359.97438 * 7 6 5 9 9 C 1.38341 * 120.29498 * 359.75437 * 8 7 6 10 10 C 1.50702 * 119.92391 * 180.25403 * 9 8 7 11 11 C 1.37969 * 120.14723 * 0.50657 * 9 8 7 12 12 N 1.35903 * 108.98255 * 359.56393 * 4 3 2 13 13 H 0.96994 * 126.55785 * 180.24357 * 12 4 3 14 14 C 1.37834 * 126.00102 * 179.69675 * 2 1 3 15 15 C 1.46656 * 126.82174 * 0.02562 * 14 2 1 16 16 O 1.21699 * 120.00130 * 0.02562 * 15 14 2 17 17 N 1.34776 * 119.99793 * 179.97438 * 15 14 2 18 18 C 1.47069 * 136.05765 * 359.63045 * 17 15 14 19 19 C 1.53754 * 87.88483 * 152.96444 * 18 17 15 20 20 O 1.42908 * 114.39306 * 272.67272 * 19 18 17 21 21 C 1.50702 * 114.26897 * 139.79679 * 19 18 17 22 22 H 1.07999 * 119.99633 * 266.47751 * 21 19 18 23 23 C 1.37881 * 120.00100 * 86.46661 * 21 19 18 24 24 N 1.31507 * 119.99920 * 0.02562 * 23 21 19 25 25 Si 1.86805 * 119.99585 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47191 * 60.00405 * 25 23 21 27 27 H 1.48502 * 109.46830 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47162 * 300.00079 * 25 23 21 29 29 C 1.47068 * 136.05491 * 180.02562 * 17 15 14 30 30 H 1.08998 * 109.47385 * 270.30631 * 1 2 3 31 31 H 1.09005 * 109.47278 * 30.30417 * 1 2 3 32 32 H 1.09001 * 109.47180 * 150.30206 * 1 2 3 33 33 H 1.08002 * 120.07634 * 0.03543 * 6 5 4 34 34 H 1.07995 * 119.92742 * 180.02562 * 7 6 5 35 35 H 1.07998 * 119.84978 * 180.02562 * 8 7 6 36 36 H 1.09006 * 109.46670 * 270.25180 * 10 9 8 37 37 H 1.09001 * 109.47545 * 30.25050 * 10 9 8 38 38 H 1.08995 * 109.47039 * 150.25346 * 10 9 8 39 39 H 1.08002 * 120.07732 * 179.77456 * 11 9 8 40 40 H 1.09000 * 113.46890 * 267.69543 * 18 17 15 41 41 H 1.08998 * 113.46536 * 38.13477 * 18 17 15 42 42 H 0.96695 * 114.00146 * 273.59280 * 20 19 18 43 43 H 0.97004 * 119.99651 * 180.02562 * 24 23 21 44 44 H 1.08994 * 113.46625 * 321.86598 * 29 17 15 45 45 H 1.08996 * 113.46815 * 92.25197 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2886 1.0756 0.0000 4 6 3.5541 0.7073 -0.0038 5 6 4.7148 1.6227 -0.0087 6 6 6.0129 1.1089 -0.0056 7 6 7.0916 1.9686 -0.0097 8 6 6.8891 3.3375 -0.0173 9 6 5.6054 3.8531 -0.0260 10 6 5.3947 5.3452 -0.0401 11 6 4.5177 3.0043 -0.0166 12 7 3.6194 -0.6502 0.0034 13 1 4.4254 -1.1898 0.0059 14 6 2.3172 -1.1151 0.0059 15 6 1.8841 -2.5162 0.0128 16 8 0.6975 -2.7863 0.0133 17 7 2.8003 -3.5047 0.0176 18 6 4.2686 -3.5877 0.0113 19 6 4.1381 -4.9443 0.7230 20 8 4.0665 -4.8590 2.1477 21 6 5.1041 -5.9941 0.2371 22 1 4.8067 -6.6836 -0.5391 23 6 6.3675 -6.0741 0.7834 24 7 6.7294 -5.2347 1.7289 25 14 7.5650 -7.3750 0.1806 26 1 7.8133 -7.1845 -1.2711 27 1 8.8453 -7.2510 0.9227 28 1 6.9882 -8.7237 0.4113 29 6 2.7715 -4.9751 0.0243 30 1 -0.3634 0.0055 1.0276 31 1 -0.3634 0.8873 -0.5186 32 1 -0.3633 -0.8927 -0.5091 33 1 6.1722 0.0407 -0.0002 34 1 8.0962 1.5724 -0.0077 35 1 7.7371 4.0062 -0.0209 36 1 5.3450 5.7147 0.9842 37 1 6.2245 5.8246 -0.5595 38 1 4.4621 5.5755 -0.5550 39 1 3.5160 3.4081 -0.0198 40 1 4.6949 -3.6616 -0.9891 41 1 4.7492 -2.8213 0.6193 42 1 4.9289 -4.8398 2.5844 43 1 7.6184 -5.2908 2.1129 44 1 1.9766 -5.3908 0.6434 45 1 2.8026 -5.4144 -0.9727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329370816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:46 Heat of formation + Delta-G solvation = 10.278516 kcal Electronic energy + Delta-G solvation = -29166.682494 eV Core-core repulsion = 25150.215860 eV Total energy + Delta-G solvation = -4016.466635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.35223 -41.23333 -40.13216 -39.07937 -36.06525 -34.74546 -34.18279 -33.89775 -33.07960 -31.27595 -30.62224 -28.41685 -27.69418 -27.07458 -26.95181 -24.91167 -23.22766 -22.50014 -21.62400 -21.17668 -20.39729 -19.56439 -18.64605 -17.82386 -17.33256 -17.07386 -17.01616 -16.81670 -16.30034 -16.06927 -15.92620 -15.89303 -15.01456 -14.77449 -14.64045 -14.49847 -14.29651 -14.10215 -14.05064 -13.89217 -13.80376 -13.46883 -13.23925 -13.00846 -12.98511 -12.87283 -12.79528 -12.31867 -12.26999 -12.26300 -12.05731 -11.73523 -11.44091 -11.28127 -11.02680 -10.71160 -10.48123 -10.36010 -9.80119 -9.72967 -9.05275 -8.32569 -6.49920 -0.42870 0.36160 0.46854 1.46705 1.48769 1.53380 1.57035 1.70249 1.79759 2.10068 2.37558 2.81319 2.88491 2.92536 3.33159 3.56816 3.68280 3.83922 3.93992 3.94587 3.99629 4.14990 4.30406 4.36740 4.38912 4.47321 4.51841 4.58233 4.67149 4.72109 4.76439 4.79006 4.87100 4.89103 4.90666 4.96287 5.04823 5.13436 5.28876 5.33370 5.41131 5.50971 5.59178 5.67731 5.83292 5.93353 6.00979 6.55195 6.58588 6.65587 6.92909 7.24010 7.41348 8.73450 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010005 B = 0.003473 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.850496 B = 8059.248488 C =10517.916732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.089 3.911 3 N -0.493 5.493 4 C 0.279 3.721 5 C -0.041 4.041 6 C -0.123 4.123 7 C -0.112 4.112 8 C -0.102 4.102 9 C -0.089 4.089 10 C -0.113 4.113 11 C -0.084 4.084 12 N -0.541 5.541 13 H 0.428 0.572 14 C -0.096 4.096 15 C 0.610 3.390 16 O -0.566 6.566 17 N -0.638 5.638 18 C 0.076 3.924 19 C 0.226 3.774 20 O -0.585 6.585 21 C -0.553 4.553 22 H 0.078 0.922 23 C 0.035 3.965 24 N -0.916 5.916 25 Si 0.971 3.029 26 H -0.266 1.266 27 H -0.283 1.283 28 H -0.275 1.275 29 C 0.111 3.889 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.152 0.848 35 H 0.157 0.843 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.133 0.867 40 H 0.100 0.900 41 H 0.057 0.943 42 H 0.390 0.610 43 H 0.278 0.722 44 H 0.060 0.940 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.606 17.349 -4.702 18.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.048 4.048 3 N -0.213 5.213 4 C 0.019 3.981 5 C -0.044 4.044 6 C -0.143 4.143 7 C -0.130 4.130 8 C -0.121 4.121 9 C -0.089 4.089 10 C -0.169 4.169 11 C -0.104 4.104 12 N -0.147 5.147 13 H 0.271 0.729 14 C -0.212 4.212 15 C 0.401 3.599 16 O -0.447 6.447 17 N -0.370 5.370 18 C -0.047 4.047 19 C 0.185 3.815 20 O -0.398 6.398 21 C -0.590 4.590 22 H 0.096 0.904 23 C -0.166 4.166 24 N -0.556 5.556 25 Si 0.796 3.204 26 H -0.191 1.191 27 H -0.208 1.208 28 H -0.201 1.201 29 C -0.011 4.011 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.137 0.863 34 H 0.170 0.830 35 H 0.175 0.825 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.151 0.849 40 H 0.118 0.882 41 H 0.075 0.925 42 H 0.246 0.754 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.033 18.154 -4.687 18.859 hybrid contribution 1.722 -2.154 0.118 2.760 sum 3.755 16.000 -4.569 17.058 Atomic orbital electron populations 1.20283 0.84815 1.03932 1.03568 1.21695 0.97872 0.85995 0.99258 1.70159 0.99390 1.29790 1.21943 1.21849 0.93695 0.80725 1.01879 1.17736 0.88471 0.92149 1.05996 1.21274 0.91609 1.00489 1.00909 1.21337 0.99172 0.93567 0.98904 1.21601 0.97338 0.95391 0.97731 1.20223 0.92512 0.97532 0.98631 1.20860 1.03715 0.88899 1.03421 1.21177 1.00295 0.90726 0.98234 1.43651 1.08239 1.07936 1.54886 0.72912 1.21151 0.84718 0.94375 1.20940 1.16492 0.84442 0.82307 0.76611 1.90731 1.16293 1.83282 1.54362 1.49652 1.08825 1.07806 1.70731 1.24266 0.77761 1.01023 1.01678 1.19787 0.91290 0.90970 0.79495 1.86057 1.37594 1.96451 1.19701 1.21605 0.97792 1.17252 1.22389 0.90432 1.25754 0.99407 0.97229 0.94204 1.69303 1.21801 1.37588 1.26944 0.85403 0.77387 0.78928 0.78723 1.19100 1.20825 1.20072 1.23403 0.98411 0.78250 1.01008 0.90122 0.89013 0.90371 0.86303 0.83018 0.82495 0.90085 0.89537 0.91072 0.84904 0.88161 0.92519 0.75405 0.91235 0.92145 0.87243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.05 9.89 71.24 0.70 -1.35 16 2 C 0.09 3.16 7.16 42.29 0.30 3.47 16 3 N -0.49 -16.84 10.79 -176.14 -1.90 -18.74 16 4 C 0.28 8.98 7.74 136.59 1.06 10.04 16 5 C -0.04 -1.10 5.87 -20.09 -0.12 -1.22 16 6 C -0.12 -2.84 9.69 22.53 0.22 -2.62 16 7 C -0.11 -1.98 10.03 22.23 0.22 -1.76 16 8 C -0.10 -1.54 9.69 22.33 0.22 -1.33 16 9 C -0.09 -1.53 5.87 -19.90 -0.12 -1.64 16 10 C -0.11 -1.23 10.01 71.24 0.71 -0.52 16 11 C -0.08 -1.93 9.33 22.53 0.21 -1.72 16 12 N -0.54 -18.27 5.90 -176.46 -1.04 -19.31 16 13 H 0.43 13.50 5.12 -92.71 -0.47 13.02 16 14 C -0.10 -3.66 7.07 40.23 0.28 -3.37 16 15 C 0.61 26.11 8.04 86.44 0.69 26.81 16 16 O -0.57 -26.10 15.62 -4.35 -0.07 -26.17 16 17 N -0.64 -26.81 3.69 -862.93 -3.18 -29.99 16 18 C 0.08 3.07 6.82 83.27 0.57 3.64 16 19 C 0.23 10.44 1.58 -11.11 -0.02 10.42 16 20 O -0.58 -29.90 13.55 -148.98 -2.02 -31.92 16 21 C -0.55 -26.11 8.70 25.60 0.22 -25.89 16 22 H 0.08 3.52 7.81 -2.91 -0.02 3.50 16 23 C 0.03 1.63 5.40 84.66 0.46 2.08 16 24 N -0.92 -43.88 11.01 21.45 0.24 -43.65 16 25 Si 0.97 37.42 29.54 68.60 2.03 39.44 16 26 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 27 H -0.28 -10.78 7.11 99.48 0.71 -10.08 16 28 H -0.28 -10.71 7.11 99.48 0.71 -10.00 16 29 C 0.11 4.71 8.02 83.19 0.67 5.38 16 30 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 32 H 0.08 2.53 6.49 -2.39 -0.02 2.52 16 33 H 0.12 2.69 7.14 -2.91 -0.02 2.67 16 34 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 36 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.09 0.64 8.09 -2.39 -0.02 0.62 16 38 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 39 H 0.13 3.07 7.82 -2.91 -0.02 3.05 16 40 H 0.10 3.74 8.10 -2.39 -0.02 3.72 16 41 H 0.06 2.26 6.43 -2.39 -0.02 2.25 16 42 H 0.39 20.13 6.32 -74.06 -0.47 19.66 16 43 H 0.28 12.65 8.31 -92.70 -0.77 11.88 16 44 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 45 H 0.11 4.12 8.10 -2.39 -0.02 4.10 16 Total: -1.00 -60.73 378.85 0.45 -60.28 By element: Atomic # 1 Polarization: 49.53 SS G_CDS: 0.11 Total: 49.63 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: 6.29 Total: 20.41 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -5.89 Total: -111.68 kcal Atomic # 8 Polarization: -56.00 SS G_CDS: -2.09 Total: -58.09 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.44 kcal Total: -60.73 0.45 -60.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329370816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.557 kcal (2) G-P(sol) polarization free energy of solvation -60.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds