Wall clock time and date at job start Sat Apr 11 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35684 * 116.99759 * 2 1 4 4 C 1.38895 * 119.62020 * 180.02562 * 3 2 1 5 5 C 1.39573 * 118.94345 * 180.29515 * 4 3 2 6 6 C 1.48164 * 120.89158 * 179.70317 * 5 4 3 7 7 O 1.21508 * 120.00536 * 132.44090 * 6 5 4 8 8 N 1.34783 * 119.99840 * 312.44145 * 6 5 4 9 9 C 1.46500 * 119.99643 * 4.83303 * 8 6 5 10 10 C 1.50695 * 109.47129 * 95.89024 * 9 8 6 11 11 H 1.07996 * 120.00189 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00258 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99977 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00292 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47462 * 60.00296 * 14 12 10 16 16 H 1.48505 * 109.47333 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47130 * 300.00028 * 14 12 10 18 18 C 1.46495 * 120.00075 * 184.83589 * 8 6 5 19 19 C 1.50699 * 109.47422 * 89.99768 * 18 8 6 20 20 C 1.38671 * 120.41873 * 269.72016 * 19 18 8 21 21 C 1.38631 * 118.41837 * 179.78301 * 20 19 18 22 22 C 1.38222 * 119.16279 * 0.51134 * 21 20 19 23 23 N 1.31854 * 120.76198 * 359.73009 * 22 21 20 24 24 C 1.31886 * 121.72708 * 359.97438 * 23 22 21 25 25 C 1.39969 * 118.21902 * 359.48453 * 5 4 3 26 26 C 1.37978 * 119.13257 * 0.49350 * 25 5 4 27 27 C 1.50698 * 119.51347 * 179.74818 * 26 25 5 28 28 N 1.31907 * 120.97488 * 359.76603 * 26 25 5 29 29 H 1.08999 * 109.46834 * 300.00153 * 1 2 3 30 30 H 1.08996 * 109.47057 * 60.00041 * 1 2 3 31 31 H 1.09001 * 109.46899 * 180.02562 * 1 2 3 32 32 H 1.07996 * 120.53071 * 0.02562 * 4 3 2 33 33 H 1.09008 * 109.47061 * 215.89060 * 9 8 6 34 34 H 1.09005 * 109.47381 * 335.88905 * 9 8 6 35 35 H 0.96999 * 120.00293 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.46821 * 210.00032 * 18 8 6 37 37 H 1.09005 * 109.47266 * 329.99311 * 18 8 6 38 38 H 1.07997 * 120.79075 * 0.02562 * 20 19 18 39 39 H 1.08001 * 120.41619 * 180.22422 * 21 20 19 40 40 H 1.07995 * 119.62088 * 179.74863 * 22 21 20 41 41 H 1.08007 * 119.61749 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.43130 * 180.24971 * 25 5 4 43 43 H 1.09002 * 109.46717 * 270.02399 * 27 26 25 44 44 H 1.09001 * 109.46961 * 30.01896 * 27 26 25 45 45 H 1.08990 * 109.47376 * 150.02056 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2725 -0.0005 5 6 4.0514 2.5235 0.0058 6 6 5.5283 2.6416 0.0120 7 8 6.0805 3.4002 -0.7600 8 7 6.2593 1.9074 0.8742 9 6 5.6039 0.9162 1.7309 10 6 5.6945 -0.4430 1.0866 11 1 6.1903 -0.5571 0.1340 12 6 5.1444 -1.5411 1.7133 13 7 4.5401 -1.4022 2.8731 14 14 5.2573 -3.2261 0.9150 15 1 6.6847 -3.5938 0.7346 16 1 4.5928 -4.2309 1.7834 17 1 4.5837 -3.1932 -0.4081 18 6 7.7093 2.1007 0.9544 19 6 8.0191 3.1569 1.9838 20 6 8.1035 4.4915 1.6169 21 6 8.3863 5.4289 2.5983 22 6 8.5838 5.0040 3.8987 23 7 8.5007 3.7255 4.2104 24 6 8.2278 2.8070 3.3042 25 6 3.2394 3.6636 0.0013 26 6 1.8680 3.5116 0.0013 27 6 0.9857 4.7333 0.0022 28 7 1.3179 2.3127 0.0008 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.0231 0.3684 -0.0014 33 1 6.0983 0.8917 2.7021 34 1 4.5562 1.1864 1.8634 35 1 4.1534 -2.1747 3.3142 36 1 8.1854 1.1631 1.2412 37 1 8.0879 2.4181 -0.0172 38 1 7.9488 4.7939 0.5917 39 1 8.4559 6.4775 2.3491 40 1 8.8085 5.7275 4.6683 41 1 8.1675 1.7693 3.5973 42 1 3.6806 4.6494 0.0018 43 1 0.7734 5.0273 1.0302 44 1 1.4943 5.5492 -0.5114 45 1 0.0513 4.5071 -0.5113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337473281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:49 Heat of formation + Delta-G solvation = -13.812816 kcal Electronic energy + Delta-G solvation = -29973.141405 eV Core-core repulsion = 25955.630092 eV Total energy + Delta-G solvation = -4017.511313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.01452 -41.22942 -40.35865 -38.83918 -37.07511 -35.02812 -34.23925 -33.35507 -32.76871 -32.41162 -29.55969 -29.14164 -27.89730 -27.38146 -25.32423 -24.65983 -24.26716 -23.65688 -22.84679 -20.49381 -19.10255 -18.67655 -18.10888 -17.93869 -17.68862 -17.14169 -17.06626 -16.89719 -16.76466 -16.44040 -16.24742 -15.54175 -15.22868 -14.96264 -14.78635 -14.60924 -14.37710 -14.26896 -14.12108 -13.91285 -13.61290 -13.35264 -13.24775 -13.07787 -12.93159 -12.81116 -12.67366 -12.58416 -12.48569 -12.16856 -11.96449 -11.78589 -11.38060 -10.86861 -10.78775 -10.61419 -10.49510 -10.45466 -9.98597 -9.61664 -9.36225 -8.21491 -6.35123 -0.17433 0.10829 0.15182 0.32875 1.42395 1.44590 1.50168 1.61129 2.04936 2.22588 2.41810 2.71765 2.92239 3.09154 3.20074 3.45174 3.53947 3.86324 3.90176 3.96697 4.08860 4.09610 4.12382 4.16173 4.40991 4.42866 4.45633 4.59075 4.66246 4.68674 4.71708 4.74349 4.80506 4.82375 4.86268 4.94537 5.08414 5.16989 5.19803 5.26461 5.35598 5.45048 5.58391 5.71643 5.77594 6.00655 6.27888 6.38181 6.74250 6.79680 7.01154 7.06223 7.35507 8.83939 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008319 B = 0.005072 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3365.045315 B = 5519.611135 C = 7923.225119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.323 6.323 3 C 0.307 3.693 4 C -0.168 4.168 5 C -0.059 4.059 6 C 0.562 3.438 7 O -0.567 6.567 8 N -0.580 5.580 9 C 0.251 3.749 10 C -0.546 4.546 11 H 0.059 0.941 12 C 0.036 3.964 13 N -0.908 5.908 14 Si 0.947 3.053 15 H -0.268 1.268 16 H -0.283 1.283 17 H -0.273 1.273 18 C 0.160 3.840 19 C -0.157 4.157 20 C -0.065 4.065 21 C -0.167 4.167 22 C 0.090 3.910 23 N -0.512 5.512 24 C 0.101 3.899 25 C -0.169 4.169 26 C 0.151 3.849 27 C -0.094 4.094 28 N -0.534 5.534 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.116 0.884 32 H 0.158 0.842 33 H 0.020 0.980 34 H 0.027 0.973 35 H 0.267 0.733 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.139 0.861 39 H 0.169 0.831 40 H 0.186 0.814 41 H 0.147 0.853 42 H 0.158 0.842 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.221 12.174 -2.794 12.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.230 6.230 3 C 0.129 3.871 4 C -0.188 4.188 5 C -0.069 4.069 6 C 0.350 3.650 7 O -0.449 6.449 8 N -0.308 5.308 9 C 0.130 3.870 10 C -0.584 4.584 11 H 0.077 0.923 12 C -0.167 4.167 13 N -0.546 5.546 14 Si 0.772 3.228 15 H -0.193 1.193 16 H -0.209 1.209 17 H -0.199 1.199 18 C 0.038 3.962 19 C -0.161 4.161 20 C -0.091 4.091 21 C -0.186 4.186 22 C -0.067 4.067 23 N -0.221 5.221 24 C -0.055 4.055 25 C -0.190 4.190 26 C 0.014 3.986 27 C -0.151 4.151 28 N -0.260 5.260 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.135 0.865 32 H 0.175 0.825 33 H 0.038 0.962 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.157 0.843 39 H 0.186 0.814 40 H 0.203 0.797 41 H 0.165 0.835 42 H 0.175 0.825 43 H 0.111 0.889 44 H 0.119 0.881 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.672 11.802 -2.150 12.291 hybrid contribution 0.524 -1.233 -0.920 1.626 sum -2.148 10.569 -3.070 11.214 Atomic orbital electron populations 1.23057 0.75815 1.04409 1.02404 1.86311 1.24533 1.24392 1.87760 1.19712 0.89095 0.85010 0.93329 1.22028 0.93272 1.00356 1.03191 1.20134 0.93913 0.93855 0.98999 1.18291 0.86587 0.79817 0.80339 1.90646 1.72787 1.40554 1.40917 1.48135 1.07527 1.36827 1.38285 1.19273 0.92952 0.85551 0.89197 1.21454 1.37824 0.92735 1.06413 0.92301 1.25524 0.94124 1.02068 0.94977 1.70001 1.36451 1.31989 1.16133 0.85776 0.78639 0.79765 0.78623 1.19290 1.20859 1.19852 1.20259 0.80321 0.97598 0.98047 1.21230 1.02090 0.96374 0.96364 1.21790 0.94170 0.92082 1.01066 1.22480 1.00553 1.02042 0.93566 1.23365 0.94542 0.92290 0.96511 1.67717 1.13498 1.03287 1.37558 1.22715 0.94554 0.99374 0.88878 1.21973 0.93870 0.98803 1.04319 1.21496 0.91874 0.92675 0.92527 1.20818 0.98571 0.91202 1.04462 1.67021 1.41022 0.98589 1.19362 0.92528 0.91655 0.86544 0.82502 0.96155 0.95493 0.92354 0.88668 0.89041 0.84349 0.81353 0.79684 0.83518 0.82483 0.88893 0.88139 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.06 10.38 113.37 1.18 2.23 16 2 O -0.32 -12.76 10.47 -90.02 -0.94 -13.70 16 3 C 0.31 12.45 7.49 84.80 0.63 13.09 16 4 C -0.17 -7.34 7.55 22.75 0.17 -7.17 16 5 C -0.06 -2.37 4.99 -19.90 -0.10 -2.47 16 6 C 0.56 23.36 7.31 86.88 0.63 23.99 16 7 O -0.57 -23.92 16.48 -3.74 -0.06 -23.99 16 8 N -0.58 -23.97 2.44 -833.55 -2.04 -26.01 16 9 C 0.25 11.92 4.67 85.63 0.40 12.32 16 10 C -0.55 -27.57 6.89 25.60 0.18 -27.39 16 11 H 0.06 2.98 7.81 -2.91 -0.02 2.96 16 12 C 0.04 1.83 5.46 84.65 0.46 2.30 16 13 N -0.91 -49.73 13.29 21.45 0.28 -49.45 16 14 Si 0.95 41.65 29.54 68.60 2.03 43.68 16 15 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 18 C 0.16 5.68 5.61 85.63 0.48 6.16 16 19 C -0.16 -5.10 5.48 -19.78 -0.11 -5.21 16 20 C -0.06 -1.81 9.86 22.47 0.22 -1.59 16 21 C -0.17 -3.75 10.11 22.36 0.23 -3.53 16 22 C 0.09 2.19 11.18 84.69 0.95 3.13 16 23 N -0.51 -16.18 10.36 -195.85 -2.03 -18.21 16 24 C 0.10 3.39 10.86 84.67 0.92 4.31 16 25 C -0.17 -5.62 9.45 22.63 0.21 -5.40 16 26 C 0.15 4.58 6.77 42.49 0.29 4.87 16 27 C -0.09 -1.79 10.16 71.24 0.72 -1.06 16 28 N -0.53 -18.72 9.09 -297.18 -2.70 -21.42 16 29 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 30 H 0.06 1.65 8.10 -2.39 -0.02 1.63 16 31 H 0.12 2.60 8.14 -2.39 -0.02 2.59 16 32 H 0.16 7.74 4.81 -2.91 -0.01 7.73 16 33 H 0.02 1.03 8.12 -2.38 -0.02 1.01 16 34 H 0.03 1.40 5.38 -2.38 -0.01 1.39 16 35 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 36 H 0.10 3.32 8.02 -2.39 -0.02 3.30 16 37 H 0.09 3.12 7.31 -2.38 -0.02 3.10 16 38 H 0.14 3.83 7.95 -2.91 -0.02 3.81 16 39 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 40 H 0.19 3.05 8.06 -2.91 -0.02 3.03 16 41 H 0.15 5.05 8.06 -2.91 -0.02 5.03 16 42 H 0.16 4.43 8.06 -2.91 -0.02 4.40 16 43 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.10 1.45 8.07 -2.39 -0.02 1.43 16 45 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -65.43 385.87 3.02 -62.41 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 1.01 Total: 28.12 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: 7.47 Total: 18.58 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -6.48 Total: -115.08 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -1.00 Total: -37.69 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -65.43 3.02 -62.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337473281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.594 kcal (2) G-P(sol) polarization free energy of solvation -65.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds