Wall clock time and date at job start Sat Apr 11 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 113.41320 * 2 1 4 4 C 1.53494 * 114.20305 * 133.20088 * 2 1 3 5 5 N 1.47067 * 87.98420 * 139.65368 * 4 2 1 6 6 C 1.34777 * 136.05621 * 152.83653 * 5 4 2 7 7 O 1.21632 * 120.00315 * 0.02562 * 6 5 4 8 8 C 1.47176 * 120.00033 * 180.02562 * 6 5 4 9 9 C 1.41089 * 126.47920 * 0.02625 * 8 6 5 10 10 N 1.30459 * 108.30070 * 179.97438 * 9 8 6 11 11 N 1.39907 * 109.22208 * 359.97438 * 10 9 8 12 12 C 1.46501 * 125.80760 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.46948 * 89.97813 * 12 11 10 14 14 H 1.08004 * 120.00543 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99801 * 179.97438 * 13 12 11 16 16 N 1.31503 * 120.00037 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99511 * 179.97438 * 15 13 12 18 18 H 1.48488 * 109.47445 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46589 * 120.00441 * 17 15 13 20 20 H 1.48496 * 109.46779 * 239.99680 * 17 15 13 21 21 C 1.35181 * 108.38448 * 359.76848 * 11 10 9 22 22 C 1.47731 * 126.47330 * 180.26872 * 21 11 10 23 23 C 1.39614 * 120.14969 * 134.84192 * 22 21 11 24 24 C 1.37953 * 119.85013 * 179.69444 * 23 22 21 25 25 C 1.38367 * 120.14529 * 0.58010 * 24 23 22 26 26 C 1.38356 * 120.30112 * 359.72040 * 25 24 23 27 27 C 1.37952 * 120.15291 * 359.97438 * 26 25 24 28 28 C 1.47061 * 87.88663 * 333.10116 * 5 4 2 29 29 H 1.08995 * 109.47500 * 286.79858 * 1 2 3 30 30 H 1.08998 * 109.47080 * 46.79607 * 1 2 3 31 31 H 1.09005 * 109.46981 * 166.80077 * 1 2 3 32 32 H 0.96698 * 114.00323 * 313.20430 * 3 2 1 33 33 H 1.09003 * 113.47441 * 24.87861 * 4 2 1 34 34 H 1.09003 * 113.47064 * 254.43589 * 4 2 1 35 35 H 1.08005 * 125.84865 * 359.97438 * 9 8 6 36 36 H 1.08998 * 109.47074 * 209.97539 * 12 11 10 37 37 H 1.08996 * 109.47456 * 329.97989 * 12 11 10 38 38 H 0.97000 * 120.00254 * 180.02562 * 16 15 13 39 39 H 1.07999 * 120.07535 * 0.02562 * 23 22 21 40 40 H 1.07995 * 119.92875 * 180.29830 * 24 23 22 41 41 H 1.08001 * 119.84875 * 179.73947 * 25 24 23 42 42 H 1.07999 * 119.92890 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.07956 * 180.02562 * 27 26 25 44 44 H 1.08999 * 113.47211 * 141.67778 * 28 5 4 45 45 H 1.09000 * 113.46686 * 272.11774 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0978 1.3113 0.0000 4 6 2.1593 -0.9584 1.0206 5 7 3.1598 -1.3053 0.0000 6 6 4.4334 -1.7463 0.0001 7 8 5.0081 -1.9452 1.0534 8 6 5.1288 -1.9871 -1.2745 9 6 4.5969 -1.8026 -2.5682 10 7 5.5158 -2.1203 -3.4381 11 7 6.6727 -2.5205 -2.7607 12 6 7.9253 -2.9531 -3.3852 13 6 8.8186 -1.7586 -3.5993 14 1 8.4868 -0.7754 -3.2997 15 6 10.0602 -1.9208 -4.1767 16 7 10.4644 -3.1180 -4.5410 17 14 11.1672 -0.4399 -4.4427 18 1 10.4843 0.7834 -3.9507 19 1 12.4372 -0.6311 -3.6971 20 1 11.4606 -0.2951 -5.8911 21 6 6.4399 -2.4345 -1.4318 22 6 7.3937 -2.7565 -0.3506 23 6 7.5355 -1.8951 0.7390 24 6 8.4234 -2.2050 1.7483 25 6 9.1812 -3.3605 1.6766 26 6 9.0501 -4.2154 0.5967 27 6 8.1615 -3.9207 -0.4165 28 6 2.1613 -0.9530 -1.0205 29 1 -0.3634 0.2970 0.9837 30 1 -0.3633 0.7035 -0.7491 31 1 -0.3633 -1.0006 -0.2347 32 1 1.6992 1.9126 -0.6439 33 1 1.5100 -1.7907 1.2924 34 1 2.5820 -0.4520 1.8884 35 1 3.5999 -1.4573 -2.7988 36 1 8.4268 -3.6700 -2.7350 37 1 7.7096 -3.4222 -4.3452 38 1 11.3380 -3.2322 -4.9469 39 1 6.9475 -0.9909 0.7941 40 1 8.5306 -1.5420 2.5940 41 1 9.8779 -3.5963 2.4675 42 1 9.6449 -5.1154 0.5467 43 1 8.0598 -4.5891 -1.2587 44 1 2.5855 -0.4421 -1.8848 45 1 1.5124 -1.7838 -1.2979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338606428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:57 Heat of formation + Delta-G solvation = 40.306717 kcal Electronic energy + Delta-G solvation = -29751.832821 eV Core-core repulsion = 25736.668307 eV Total energy + Delta-G solvation = -4015.164514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.48112 -41.36250 -39.71693 -39.00105 -36.22958 -35.83702 -33.93610 -33.01545 -31.94924 -31.68731 -30.01428 -29.39296 -27.65455 -27.16549 -25.39887 -24.15618 -23.57188 -22.84625 -21.51809 -21.07926 -20.08495 -18.96656 -18.44510 -17.85136 -17.46295 -17.05587 -16.92111 -16.62267 -16.45763 -16.06976 -15.77639 -15.45617 -15.30250 -15.14473 -14.72748 -14.57093 -14.45200 -14.16104 -13.97646 -13.87327 -13.62762 -13.51891 -13.12317 -13.04789 -12.78933 -12.75951 -12.69531 -12.41197 -12.31914 -12.01203 -11.93019 -11.85172 -11.66522 -10.98021 -10.78246 -10.71640 -10.66606 -9.92504 -9.79580 -9.60625 -9.24880 -8.40412 -6.55678 -0.09623 0.53406 0.87052 1.21576 1.32486 1.33954 1.45150 1.54209 1.95146 2.29553 2.44655 2.91147 2.92993 2.97356 3.31676 3.42355 3.50926 3.91024 3.96980 3.99297 4.06514 4.16780 4.20279 4.22613 4.39639 4.47097 4.54431 4.56476 4.63414 4.71270 4.79068 4.84162 4.88998 4.95547 4.99682 5.00982 5.11865 5.13373 5.37022 5.42662 5.50040 5.56011 5.56619 5.59290 5.71584 5.92701 6.07014 6.49880 6.68271 6.72411 6.90324 7.14132 7.24880 8.68001 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011588 B = 0.003707 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.787293 B = 7552.272678 C = 8879.650887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.105 3.895 3 O -0.559 6.559 4 C 0.108 3.892 5 N -0.646 5.646 6 C 0.623 3.377 7 O -0.576 6.576 8 C -0.313 4.313 9 C 0.075 3.925 10 N -0.326 5.326 11 N -0.329 5.329 12 C 0.262 3.738 13 C -0.554 4.554 14 H 0.045 0.955 15 C 0.028 3.972 16 N -0.912 5.912 17 Si 0.968 3.032 18 H -0.276 1.276 19 H -0.267 1.267 20 H -0.268 1.268 21 C 0.179 3.821 22 C -0.059 4.059 23 C -0.057 4.057 24 C -0.132 4.132 25 C -0.100 4.100 26 C -0.130 4.130 27 C -0.108 4.108 28 C 0.062 3.938 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.400 0.600 33 H 0.124 0.876 34 H 0.062 0.938 35 H 0.224 0.776 36 H 0.058 0.942 37 H 0.034 0.966 38 H 0.275 0.725 39 H 0.109 0.891 40 H 0.149 0.851 41 H 0.161 0.839 42 H 0.149 0.851 43 H 0.110 0.890 44 H 0.086 0.914 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.165 3.574 10.741 21.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.063 3.937 3 O -0.368 6.368 4 C -0.014 4.014 5 N -0.380 5.380 6 C 0.415 3.585 7 O -0.457 6.457 8 C -0.328 4.328 9 C -0.110 4.110 10 N -0.146 5.146 11 N -0.105 5.105 12 C 0.144 3.856 13 C -0.592 4.592 14 H 0.063 0.937 15 C -0.174 4.174 16 N -0.550 5.550 17 Si 0.792 3.208 18 H -0.201 1.201 19 H -0.192 1.192 20 H -0.193 1.193 21 C 0.044 3.956 22 C -0.061 4.061 23 C -0.076 4.076 24 C -0.150 4.150 25 C -0.118 4.118 26 C -0.148 4.148 27 C -0.127 4.127 28 C -0.060 4.060 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.251 0.749 33 H 0.142 0.858 34 H 0.081 0.919 35 H 0.240 0.760 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.084 0.916 39 H 0.127 0.873 40 H 0.166 0.834 41 H 0.179 0.821 42 H 0.167 0.833 43 H 0.128 0.872 44 H 0.104 0.896 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.730 2.878 10.266 19.839 hybrid contribution 0.306 0.789 -0.328 0.907 sum -16.425 3.667 9.938 19.544 Atomic orbital electron populations 1.22149 0.89816 1.05089 1.04229 1.22333 0.93899 0.82742 0.94723 1.86545 1.64676 1.21746 1.63874 1.23372 0.87809 0.96834 0.93414 1.49112 1.09696 1.66056 1.13165 1.16570 0.79809 0.75175 0.86938 1.90733 1.66193 1.54970 1.33834 1.20076 0.94879 1.23112 0.94714 1.24589 0.99958 0.97703 0.88786 1.77041 0.93177 1.21574 1.22765 1.49369 1.11838 1.46165 1.03135 1.19587 0.75917 0.96239 0.93824 1.21333 1.01618 0.93261 1.43013 0.93699 1.25660 0.98434 0.99388 0.93897 1.69980 1.21232 1.23076 1.40746 0.85356 0.78390 0.78533 0.78546 1.20105 1.19232 1.19300 1.20248 0.94119 0.96170 0.85058 1.18063 0.97222 0.97153 0.93676 1.21076 0.95975 0.98040 0.92504 1.21327 0.96351 0.98583 0.98750 1.21611 0.98588 0.93405 0.98238 1.21294 0.98296 1.01286 0.93894 1.21315 0.96262 0.96021 0.99115 1.24255 0.88632 0.99004 0.94103 0.90751 0.89668 0.89082 0.74883 0.85826 0.91910 0.75985 0.92416 0.94830 0.91584 0.87331 0.83357 0.82138 0.83345 0.87198 0.89603 0.85714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 9.54 71.98 0.69 -0.12 16 2 C 0.11 1.43 2.03 -10.55 -0.02 1.41 16 3 O -0.56 -9.81 13.55 -148.98 -2.02 -11.83 16 4 C 0.11 2.12 8.05 83.18 0.67 2.79 16 5 N -0.65 -17.57 3.69 -863.50 -3.19 -20.76 16 6 C 0.62 23.54 7.94 86.59 0.69 24.22 16 7 O -0.58 -24.84 13.76 -4.13 -0.06 -24.90 16 8 C -0.31 -12.80 6.13 -19.95 -0.12 -12.92 16 9 C 0.07 2.77 11.12 85.60 0.95 3.72 16 10 N -0.33 -14.86 12.48 -56.40 -0.70 -15.57 16 11 N -0.33 -16.38 3.59 -338.04 -1.21 -17.59 16 12 C 0.26 14.27 5.95 85.63 0.51 14.78 16 13 C -0.55 -32.13 9.39 25.60 0.24 -31.89 16 14 H 0.04 2.72 7.81 -2.91 -0.02 2.70 16 15 C 0.03 1.56 5.46 84.66 0.46 2.02 16 16 N -0.91 -52.01 13.29 21.45 0.28 -51.72 16 17 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 21 C 0.18 8.35 6.50 41.43 0.27 8.62 16 22 C -0.06 -2.63 5.25 -20.10 -0.11 -2.73 16 23 C -0.06 -2.32 7.55 22.53 0.17 -2.15 16 24 C -0.13 -4.38 10.03 22.23 0.22 -4.16 16 25 C -0.10 -2.98 10.04 22.33 0.22 -2.76 16 26 C -0.13 -4.35 10.03 22.23 0.22 -4.12 16 27 C -0.11 -4.45 8.52 22.53 0.19 -4.26 16 28 C 0.06 1.01 6.50 83.09 0.54 1.55 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.09 0.23 7.90 -2.38 -0.02 0.21 16 32 H 0.40 3.17 9.04 -74.06 -0.67 2.50 16 33 H 0.12 1.69 8.10 -2.39 -0.02 1.67 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.22 5.72 5.21 -2.91 -0.02 5.71 16 36 H 0.06 3.15 5.06 -2.39 -0.01 3.14 16 37 H 0.03 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 39 H 0.11 4.67 6.81 -2.91 -0.02 4.65 16 40 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 41 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 42 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 43 H 0.11 4.65 6.51 -2.91 -0.02 4.63 16 44 H 0.09 1.41 6.17 -2.39 -0.01 1.39 16 45 H 0.13 1.27 7.94 -2.39 -0.02 1.25 16 Total: -1.00 -80.55 376.84 1.30 -79.25 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.37 Total: 22.84 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 5.80 Total: -5.99 kcal Atomic # 7 Polarization: -100.82 SS G_CDS: -4.82 Total: -105.64 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -2.08 Total: -36.73 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -80.55 1.30 -79.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338606428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.555 kcal (2) G-P(sol) polarization free energy of solvation -80.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds