Wall clock time and date at job start Sat Apr 11 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35435 * 116.99577 * 2 1 4 4 N 1.32234 * 119.79825 * 359.97438 * 3 2 1 5 5 C 1.31886 * 121.79691 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.40361 * 180.02562 * 5 4 3 7 7 C 1.38357 * 121.18675 * 0.28249 * 5 4 3 8 8 C 1.38338 * 119.45743 * 359.42875 * 7 5 4 9 9 C 1.39992 * 118.34773 * 0.55030 * 8 7 5 10 10 C 1.47524 * 120.59739 * 179.75518 * 9 8 7 11 11 O 1.21596 * 120.00065 * 126.44243 * 10 9 8 12 12 N 1.34778 * 119.99944 * 306.44524 * 10 9 8 13 13 C 1.46494 * 120.00301 * 4.75090 * 12 10 9 14 14 C 1.50701 * 109.47351 * 95.75920 * 13 12 10 15 15 H 1.08004 * 119.99433 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00443 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00057 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99898 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47002 * 90.00091 * 18 16 14 20 20 H 1.48500 * 109.47168 * 210.00284 * 18 16 14 21 21 H 1.48503 * 109.47039 * 330.00461 * 18 16 14 22 22 C 1.46503 * 119.99829 * 184.75671 * 12 10 9 23 23 C 1.50700 * 109.47119 * 89.99601 * 22 12 10 24 24 C 1.38674 * 120.42101 * 269.72033 * 23 22 12 25 25 C 1.38626 * 118.42119 * 179.78510 * 24 23 22 26 26 C 1.38217 * 119.16201 * 0.51324 * 25 24 23 27 27 N 1.31861 * 120.76291 * 359.72600 * 26 25 24 28 28 C 1.31877 * 121.72506 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.47636 * 60.00229 * 1 2 3 30 30 H 1.09000 * 109.46512 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47130 * 299.99526 * 1 2 3 32 32 H 1.09004 * 109.46925 * 90.00967 * 6 5 4 33 33 H 1.08994 * 109.47654 * 330.00612 * 6 5 4 34 34 H 1.08997 * 109.46738 * 210.00193 * 6 5 4 35 35 H 1.07991 * 120.26931 * 179.72179 * 7 5 4 36 36 H 1.07995 * 120.82774 * 180.28850 * 8 7 5 37 37 H 1.09000 * 109.47558 * 215.76473 * 13 12 10 38 38 H 1.09005 * 109.47183 * 335.76320 * 13 12 10 39 39 H 0.97005 * 119.99482 * 179.97438 * 17 16 14 40 40 H 1.08995 * 109.47012 * 209.99683 * 22 12 10 41 41 H 1.09000 * 109.47168 * 329.99503 * 22 12 10 42 42 H 1.07999 * 120.78597 * 0.02562 * 24 23 22 43 43 H 1.08003 * 120.41266 * 180.22072 * 25 24 23 44 44 H 1.07996 * 119.62175 * 179.74752 * 26 25 24 45 45 H 1.08003 * 119.61748 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2068 0.0000 4 7 1.3196 2.3132 -0.0005 5 6 1.8769 3.5085 0.0000 6 6 0.9996 4.7339 -0.0001 7 6 3.2524 3.6577 -0.0048 8 6 4.0586 2.5336 0.0018 9 6 3.4449 1.2754 0.0014 10 6 4.2569 0.0438 0.0029 11 8 4.0683 -0.8079 0.8500 12 7 5.2080 -0.1374 -0.9347 13 6 5.5069 0.9313 -1.8911 14 6 6.6805 1.7359 -1.3947 15 1 7.1564 1.4767 -0.4604 16 6 7.1467 2.8028 -2.1331 17 7 8.1712 3.5046 -1.7001 18 14 6.3231 3.2515 -3.7487 19 1 5.2309 4.2248 -3.4939 20 1 7.3239 3.8583 -4.6627 21 1 5.7597 2.0278 -4.3736 22 6 5.9429 -1.4033 -0.9976 23 6 5.2182 -2.3601 -1.9087 24 6 4.2566 -3.2209 -1.4013 25 6 3.6123 -4.0806 -2.2773 26 6 3.9550 -4.0591 -3.6162 27 7 4.8782 -3.2303 -4.0628 28 6 5.5079 -2.3954 -3.2593 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 0.7879 5.0292 1.0276 33 1 0.0646 4.5114 -0.5142 34 1 1.5120 5.5474 -0.5136 35 1 3.6930 4.6436 -0.0089 36 1 5.1347 2.6243 0.0030 37 1 5.7495 0.4946 -2.8599 38 1 4.6378 1.5813 -1.9929 39 1 8.4993 4.2551 -2.2199 40 1 6.9458 -1.2223 -1.3843 41 1 6.0110 -1.8339 0.0015 42 1 4.0126 -3.2187 -0.3492 43 1 2.8556 -4.7619 -1.9174 44 1 3.4608 -4.7286 -4.3045 45 1 6.2581 -1.7308 -3.6618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346779387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:09 Heat of formation + Delta-G solvation = 6.230109 kcal Electronic energy + Delta-G solvation = -30361.932643 eV Core-core repulsion = 26345.290456 eV Total energy + Delta-G solvation = -4016.642187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.69884 -40.00050 -38.66123 -37.80061 -35.35688 -33.44894 -32.61818 -32.11544 -31.51119 -31.26090 -28.39138 -28.22859 -27.06895 -25.72001 -23.41320 -23.04911 -22.55342 -22.37490 -21.70227 -19.15120 -17.92236 -17.28255 -16.89114 -16.68360 -16.58999 -15.96074 -15.89431 -15.53796 -15.12880 -14.56996 -14.34945 -14.17740 -13.95190 -13.84664 -13.58896 -13.37243 -13.03969 -12.80820 -12.70787 -12.58231 -12.38136 -12.33648 -12.09580 -11.88048 -11.76206 -11.60410 -11.28622 -11.08577 -10.90327 -10.75940 -10.38792 -9.86528 -9.71523 -9.61732 -9.42433 -9.29143 -9.15192 -8.84045 -8.76807 -8.15761 -7.88731 -6.34993 -4.37685 1.14382 1.25568 1.48817 1.63402 3.10401 3.17960 3.20084 3.23518 3.30162 3.62895 4.02529 4.13648 4.16944 4.33448 4.61868 4.92467 4.97862 5.03807 5.10664 5.11393 5.23591 5.28702 5.30251 5.35303 5.37279 5.47974 5.55928 5.58785 5.67132 5.70462 5.77340 5.84615 5.98798 6.05905 6.14938 6.31520 6.31954 6.35634 6.49752 6.56009 6.60692 6.86445 6.88959 7.17494 7.32234 7.42655 7.93789 8.04131 8.13685 8.27893 8.68177 8.79014 9.24212 10.76086 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007756 B = 0.006010 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3609.315909 B = 4657.747797 C = 7071.321790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.292 6.292 3 C 0.356 3.644 4 N -0.551 5.551 5 C 0.172 3.828 6 C -0.103 4.103 7 C -0.217 4.217 8 C 0.009 3.991 9 C -0.200 4.200 10 C 0.579 3.421 11 O -0.550 6.550 12 N -0.580 5.580 13 C 0.204 3.796 14 C -0.547 4.547 15 H 0.084 0.916 16 C 0.085 3.915 17 N -0.882 5.882 18 Si 0.861 3.139 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.263 1.263 22 C 0.162 3.838 23 C -0.146 4.146 24 C -0.053 4.053 25 C -0.179 4.179 26 C 0.090 3.910 27 N -0.490 5.490 28 C 0.112 3.888 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.140 0.860 36 H 0.181 0.819 37 H 0.033 0.967 38 H 0.032 0.968 39 H 0.269 0.731 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.138 0.862 43 H 0.130 0.870 44 H 0.150 0.850 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.998 -4.685 0.556 12.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.198 6.198 3 C 0.177 3.823 4 N -0.276 5.276 5 C 0.036 3.964 6 C -0.160 4.160 7 C -0.238 4.238 8 C -0.016 4.016 9 C -0.205 4.205 10 C 0.366 3.634 11 O -0.429 6.429 12 N -0.310 5.310 13 C 0.083 3.917 14 C -0.585 4.585 15 H 0.102 0.898 16 C -0.121 4.121 17 N -0.519 5.519 18 Si 0.687 3.313 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.187 1.187 22 C 0.038 3.962 23 C -0.149 4.149 24 C -0.080 4.080 25 C -0.199 4.199 26 C -0.068 4.068 27 N -0.199 5.199 28 C -0.045 4.045 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.158 0.842 36 H 0.198 0.802 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.156 0.844 43 H 0.148 0.852 44 H 0.167 0.833 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.540 -5.322 0.045 13.623 hybrid contribution 0.050 0.658 -0.143 0.676 sum -12.490 -4.664 -0.098 13.333 Atomic orbital electron populations 1.22816 0.77891 1.02599 1.02105 1.86327 1.22238 1.24143 1.87096 1.19629 0.87915 0.84604 0.90162 1.67107 1.40227 0.98175 1.22122 1.21040 0.92264 0.91674 0.91450 1.20742 0.99095 0.93128 1.03061 1.21803 0.93468 1.00416 1.08077 1.22574 1.03743 0.89243 0.86048 1.19832 0.90947 0.95866 1.13883 1.17745 0.79449 0.85235 0.80955 1.90685 1.69317 1.44997 1.37875 1.47793 1.35777 1.15001 1.32404 1.19940 0.97146 0.85937 0.88654 1.21335 1.14346 1.13280 1.09523 0.89829 1.24813 0.94395 0.95650 0.97203 1.69881 1.24120 1.19191 1.38671 0.87062 0.79986 0.79805 0.84460 1.19575 1.20637 1.18720 1.20163 0.94640 0.82428 0.98943 1.21440 0.98926 0.98174 0.96398 1.21673 0.92847 0.92568 1.00868 1.22100 1.01740 1.01096 0.94987 1.22687 0.94057 0.96160 0.93846 1.67693 1.07692 1.05190 1.39314 1.22786 0.97215 0.94938 0.89585 0.92588 0.88949 0.92437 0.90261 0.90686 0.90337 0.84183 0.80190 0.94914 0.95008 0.92120 0.88476 0.89276 0.84396 0.85211 0.83290 0.82615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.38 101.05 1.05 1.59 16 2 O -0.29 -5.28 9.68 -21.41 -0.21 -5.48 16 3 C 0.36 6.74 7.50 -16.61 -0.12 6.62 16 4 N -0.55 -9.38 9.11 -9.20 -0.08 -9.46 16 5 C 0.17 2.64 6.78 -82.52 -0.56 2.08 16 6 C -0.10 -1.11 10.16 36.01 0.37 -0.75 16 7 C -0.22 -3.55 9.71 -39.50 -0.38 -3.94 16 8 C 0.01 0.17 7.80 -38.89 -0.30 -0.14 16 9 C -0.20 -4.01 4.76 -104.69 -0.50 -4.51 16 10 C 0.58 12.20 6.87 -12.47 -0.09 12.11 16 11 O -0.55 -12.28 16.19 1.87 0.03 -12.25 16 12 N -0.58 -11.70 2.44 -177.67 -0.43 -12.13 16 13 C 0.20 4.39 3.75 -5.20 -0.02 4.37 16 14 C -0.55 -13.21 7.60 -34.44 -0.26 -13.47 16 15 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 16 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 17 N -0.88 -23.82 13.96 55.43 0.77 -23.04 16 18 Si 0.86 19.08 27.47 -169.99 -4.67 14.41 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 22 C 0.16 2.84 5.61 -5.19 -0.03 2.81 16 23 C -0.15 -2.39 5.48 -104.48 -0.57 -2.97 16 24 C -0.05 -0.81 9.86 -39.28 -0.39 -1.20 16 25 C -0.18 -2.35 10.11 -39.45 -0.40 -2.75 16 26 C 0.09 1.22 11.18 -17.55 -0.20 1.02 16 27 N -0.49 -7.90 10.36 -13.26 -0.14 -8.04 16 28 C 0.11 1.83 10.86 -17.55 -0.19 1.64 16 29 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 35 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 36 H 0.18 3.78 5.43 -52.49 -0.28 3.49 16 37 H 0.03 0.70 7.17 -51.93 -0.37 0.33 16 38 H 0.03 0.70 5.07 -51.93 -0.26 0.44 16 39 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.10 1.64 8.02 -51.93 -0.42 1.22 16 41 H 0.09 1.55 7.31 -51.93 -0.38 1.17 16 42 H 0.14 2.14 7.94 -52.49 -0.42 1.72 16 43 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 44 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 45 H 0.16 2.43 8.06 -52.48 -0.42 2.01 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -30.42 382.10 -7.61 -38.03 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -5.94 Total: 7.65 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -2.69 Total: 4.55 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: 0.12 Total: -52.67 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.18 Total: -17.73 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.67 Total: 14.41 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.42 -7.61 -38.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346779387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.261 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds