Wall clock time and date at job start Sat Apr 11 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35435 * 116.99577 * 2 1 4 4 N 1.32234 * 119.79825 * 359.97438 * 3 2 1 5 5 C 1.31886 * 121.79691 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.40361 * 180.02562 * 5 4 3 7 7 C 1.38357 * 121.18675 * 0.28249 * 5 4 3 8 8 C 1.38338 * 119.45743 * 359.42875 * 7 5 4 9 9 C 1.39992 * 118.34773 * 0.55030 * 8 7 5 10 10 C 1.47524 * 120.59739 * 179.75518 * 9 8 7 11 11 O 1.21596 * 120.00065 * 126.44243 * 10 9 8 12 12 N 1.34778 * 119.99944 * 306.44524 * 10 9 8 13 13 C 1.46494 * 120.00301 * 4.75090 * 12 10 9 14 14 C 1.50701 * 109.47351 * 95.75920 * 13 12 10 15 15 H 1.08004 * 119.99433 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00443 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00057 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99898 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47002 * 90.00091 * 18 16 14 20 20 H 1.48500 * 109.47168 * 210.00284 * 18 16 14 21 21 H 1.48503 * 109.47039 * 330.00461 * 18 16 14 22 22 C 1.46503 * 119.99829 * 184.75671 * 12 10 9 23 23 C 1.50700 * 109.47119 * 89.99601 * 22 12 10 24 24 C 1.38674 * 120.42101 * 269.72033 * 23 22 12 25 25 C 1.38626 * 118.42119 * 179.78510 * 24 23 22 26 26 C 1.38217 * 119.16201 * 0.51324 * 25 24 23 27 27 N 1.31861 * 120.76291 * 359.72600 * 26 25 24 28 28 C 1.31877 * 121.72506 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.47636 * 60.00229 * 1 2 3 30 30 H 1.09000 * 109.46512 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47130 * 299.99526 * 1 2 3 32 32 H 1.09004 * 109.46925 * 90.00967 * 6 5 4 33 33 H 1.08994 * 109.47654 * 330.00612 * 6 5 4 34 34 H 1.08997 * 109.46738 * 210.00193 * 6 5 4 35 35 H 1.07991 * 120.26931 * 179.72179 * 7 5 4 36 36 H 1.07995 * 120.82774 * 180.28850 * 8 7 5 37 37 H 1.09000 * 109.47558 * 215.76473 * 13 12 10 38 38 H 1.09005 * 109.47183 * 335.76320 * 13 12 10 39 39 H 0.97005 * 119.99482 * 179.97438 * 17 16 14 40 40 H 1.08995 * 109.47012 * 209.99683 * 22 12 10 41 41 H 1.09000 * 109.47168 * 329.99503 * 22 12 10 42 42 H 1.07999 * 120.78597 * 0.02562 * 24 23 22 43 43 H 1.08003 * 120.41266 * 180.22072 * 25 24 23 44 44 H 1.07996 * 119.62175 * 179.74752 * 26 25 24 45 45 H 1.08003 * 119.61748 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2068 0.0000 4 7 1.3196 2.3132 -0.0005 5 6 1.8769 3.5085 0.0000 6 6 0.9996 4.7339 -0.0001 7 6 3.2524 3.6577 -0.0048 8 6 4.0586 2.5336 0.0018 9 6 3.4449 1.2754 0.0014 10 6 4.2569 0.0438 0.0029 11 8 4.0683 -0.8079 0.8500 12 7 5.2080 -0.1374 -0.9347 13 6 5.5069 0.9313 -1.8911 14 6 6.6805 1.7359 -1.3947 15 1 7.1564 1.4767 -0.4604 16 6 7.1467 2.8028 -2.1331 17 7 8.1712 3.5046 -1.7001 18 14 6.3231 3.2515 -3.7487 19 1 5.2309 4.2248 -3.4939 20 1 7.3239 3.8583 -4.6627 21 1 5.7597 2.0278 -4.3736 22 6 5.9429 -1.4033 -0.9976 23 6 5.2182 -2.3601 -1.9087 24 6 4.2566 -3.2209 -1.4013 25 6 3.6123 -4.0806 -2.2773 26 6 3.9550 -4.0591 -3.6162 27 7 4.8782 -3.2303 -4.0628 28 6 5.5079 -2.3954 -3.2593 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 0.7879 5.0292 1.0276 33 1 0.0646 4.5114 -0.5142 34 1 1.5120 5.5474 -0.5136 35 1 3.6930 4.6436 -0.0089 36 1 5.1347 2.6243 0.0030 37 1 5.7495 0.4946 -2.8599 38 1 4.6378 1.5813 -1.9929 39 1 8.4993 4.2551 -2.2199 40 1 6.9458 -1.2223 -1.3843 41 1 6.0110 -1.8339 0.0015 42 1 4.0126 -3.2187 -0.3492 43 1 2.8556 -4.7619 -1.9174 44 1 3.4608 -4.7286 -4.3045 45 1 6.2581 -1.7308 -3.6618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346779387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:09 Heat of formation + Delta-G solvation = -13.173487 kcal Electronic energy + Delta-G solvation = -30362.774046 eV Core-core repulsion = 26345.290456 eV Total energy + Delta-G solvation = -4017.483590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.08635 -41.22128 -40.14503 -39.08598 -37.00440 -34.97419 -34.27729 -33.39394 -32.74797 -32.51614 -30.02774 -29.49472 -28.29278 -27.01662 -24.81095 -24.38867 -24.07026 -23.72058 -22.97250 -20.67437 -19.25314 -19.08914 -18.34539 -18.04883 -17.94410 -17.34006 -17.13928 -16.88172 -16.51106 -16.19209 -15.76782 -15.45609 -15.15941 -15.07099 -14.97949 -14.69922 -14.50953 -14.28908 -14.08011 -13.91895 -13.72624 -13.45208 -13.33212 -13.30875 -13.02538 -12.79967 -12.69998 -12.66491 -12.47150 -12.11202 -12.01455 -11.72862 -11.28908 -10.90684 -10.81403 -10.73042 -10.55583 -10.49415 -9.99949 -9.58785 -9.43336 -8.32043 -6.38028 -0.21561 0.08988 0.24218 0.30693 1.34496 1.39869 1.46202 1.65841 2.00849 2.16496 2.30695 2.66443 2.90832 3.00362 3.12848 3.50848 3.58543 3.83493 3.85224 3.91394 3.98918 4.07137 4.07845 4.27856 4.34759 4.38186 4.40369 4.46247 4.57609 4.66077 4.68160 4.71405 4.78569 4.79757 4.81582 4.85803 4.96655 5.12122 5.17711 5.21633 5.34481 5.39097 5.50801 5.57952 5.75003 6.12085 6.16499 6.48576 6.66460 6.71467 6.97844 7.13516 7.28318 8.82571 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007756 B = 0.006010 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3609.315909 B = 4657.747797 C = 7071.321790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.314 6.314 3 C 0.351 3.649 4 N -0.548 5.548 5 C 0.180 3.820 6 C -0.100 4.100 7 C -0.219 4.219 8 C -0.004 4.004 9 C -0.231 4.231 10 C 0.575 3.425 11 O -0.571 6.571 12 N -0.583 5.583 13 C 0.219 3.781 14 C -0.534 4.534 15 H 0.045 0.955 16 C 0.043 3.957 17 N -0.926 5.926 18 Si 0.915 3.085 19 H -0.258 1.258 20 H -0.281 1.281 21 H -0.254 1.254 22 C 0.162 3.838 23 C -0.157 4.157 24 C -0.064 4.064 25 C -0.167 4.167 26 C 0.092 3.908 27 N -0.509 5.509 28 C 0.100 3.900 29 H 0.061 0.939 30 H 0.120 0.880 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.163 0.837 36 H 0.154 0.846 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.271 0.729 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.131 0.869 43 H 0.166 0.834 44 H 0.187 0.813 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.096 -4.663 -0.787 15.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.220 6.220 3 C 0.171 3.829 4 N -0.274 5.274 5 C 0.043 3.957 6 C -0.157 4.157 7 C -0.239 4.239 8 C -0.029 4.029 9 C -0.237 4.237 10 C 0.364 3.636 11 O -0.452 6.452 12 N -0.311 5.311 13 C 0.097 3.903 14 C -0.572 4.572 15 H 0.063 0.937 16 C -0.159 4.159 17 N -0.565 5.565 18 Si 0.738 3.262 19 H -0.182 1.182 20 H -0.207 1.207 21 H -0.178 1.178 22 C 0.039 3.961 23 C -0.160 4.160 24 C -0.090 4.090 25 C -0.187 4.187 26 C -0.065 4.065 27 N -0.218 5.218 28 C -0.056 4.056 29 H 0.080 0.920 30 H 0.138 0.862 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.181 0.819 36 H 0.171 0.829 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.149 0.851 43 H 0.184 0.816 44 H 0.204 0.796 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.646 -5.320 -1.298 16.577 hybrid contribution 0.935 0.594 0.368 1.167 sum -14.711 -4.726 -0.931 15.480 Atomic orbital electron populations 1.23118 0.75437 1.04645 1.02609 1.86296 1.24777 1.24042 1.86858 1.19713 0.87651 0.85497 0.89993 1.67278 1.39736 0.98226 1.22180 1.21834 0.92559 0.92639 0.88657 1.20905 0.98709 0.91231 1.04812 1.22079 0.93978 1.00406 1.07468 1.22330 1.02746 0.90249 0.87561 1.19848 0.91842 0.95520 1.16511 1.18020 0.79478 0.85551 0.80590 1.90645 1.70072 1.45951 1.38546 1.47833 1.35839 1.15473 1.31995 1.19670 0.95817 0.85984 0.88819 1.21293 1.14572 1.13454 1.07899 0.93693 1.25433 0.94757 0.95476 1.00197 1.69999 1.25970 1.20160 1.40334 0.86194 0.79338 0.80037 0.80615 1.18232 1.20671 1.17774 1.20201 0.94713 0.81959 0.99236 1.21241 0.99866 0.98679 0.96241 1.21747 0.93055 0.93155 1.01065 1.22451 1.01418 1.00349 0.94441 1.23344 0.92932 0.95511 0.94759 1.67726 1.08646 1.05818 1.39580 1.22759 0.97757 0.95588 0.89540 0.91997 0.86234 0.91903 0.88159 0.89686 0.88241 0.81905 0.82857 0.94492 0.94909 0.91996 0.88600 0.89747 0.85100 0.81643 0.79564 0.82864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.88 10.38 113.37 1.18 2.05 16 2 O -0.31 -11.13 9.68 -84.06 -0.81 -11.95 16 3 C 0.35 13.13 7.50 85.13 0.64 13.77 16 4 N -0.55 -17.72 9.11 -296.04 -2.70 -20.42 16 5 C 0.18 5.10 6.78 42.58 0.29 5.39 16 6 C -0.10 -1.76 10.16 71.24 0.72 -1.03 16 7 C -0.22 -6.91 9.71 22.32 0.22 -6.70 16 8 C 0.00 -0.14 7.80 22.72 0.18 0.03 16 9 C -0.23 -9.50 4.76 -19.91 -0.09 -9.59 16 10 C 0.58 25.19 6.87 86.69 0.60 25.79 16 11 O -0.57 -26.53 16.19 -0.76 -0.01 -26.54 16 12 N -0.58 -24.46 2.44 -834.28 -2.04 -26.50 16 13 C 0.22 9.64 3.75 85.63 0.32 9.96 16 14 C -0.53 -26.90 7.60 25.60 0.19 -26.71 16 15 H 0.04 2.58 8.06 -2.91 -0.02 2.55 16 16 C 0.04 2.18 5.47 84.65 0.46 2.65 16 17 N -0.93 -51.51 13.96 21.45 0.30 -51.21 16 18 Si 0.91 39.08 27.47 68.60 1.88 40.97 16 19 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.25 -10.41 6.54 99.48 0.65 -9.76 16 22 C 0.16 5.97 5.61 85.63 0.48 6.45 16 23 C -0.16 -5.22 5.48 -19.77 -0.11 -5.33 16 24 C -0.06 -1.91 9.86 22.47 0.22 -1.69 16 25 C -0.17 -3.96 10.11 22.36 0.23 -3.73 16 26 C 0.09 2.23 11.18 84.68 0.95 3.17 16 27 N -0.51 -15.68 10.36 -195.85 -2.03 -17.71 16 28 C 0.10 3.27 10.86 84.67 0.92 4.19 16 29 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 30 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.06 1.44 8.10 -2.38 -0.02 1.42 16 32 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.10 1.40 8.07 -2.39 -0.02 1.38 16 35 H 0.16 4.26 8.06 -2.92 -0.02 4.24 16 36 H 0.15 6.79 5.43 -2.91 -0.02 6.78 16 37 H 0.04 1.60 7.17 -2.39 -0.02 1.59 16 38 H 0.03 1.46 5.07 -2.38 -0.01 1.45 16 39 H 0.27 14.14 8.31 -92.70 -0.77 13.37 16 40 H 0.10 3.45 8.02 -2.39 -0.02 3.43 16 41 H 0.08 3.13 7.31 -2.39 -0.02 3.12 16 42 H 0.13 4.09 7.94 -2.91 -0.02 4.07 16 43 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 44 H 0.19 3.04 8.06 -2.91 -0.02 3.02 16 45 H 0.15 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -68.12 382.10 2.94 -65.19 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.96 Total: 29.50 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 7.39 Total: 18.68 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -6.46 Total: -115.84 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -0.83 Total: -38.49 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 1.88 Total: 40.97 kcal Total: -68.12 2.94 -65.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346779387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.014 kcal (2) G-P(sol) polarization free energy of solvation -68.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds