Wall clock time and date at job start Sat Apr 11 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50709 * 119.99448 * 2 1 4 4 O 1.42893 * 109.46909 * 135.00073 * 3 2 1 5 5 C 1.35713 * 117.00131 * 179.97438 * 4 3 2 6 6 C 1.38992 * 119.91265 * 179.97438 * 5 4 3 7 7 C 1.37709 * 120.08965 * 180.02562 * 6 5 4 8 8 C 1.39736 * 119.90665 * 359.97438 * 7 6 5 9 9 C 1.47584 * 120.08693 * 179.97438 * 8 7 6 10 10 O 1.21597 * 119.99881 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00036 * 180.02562 * 9 8 7 12 12 C 1.40093 * 120.00017 * 180.02562 * 11 9 8 13 13 C 1.40424 * 125.97441 * 0.27907 * 12 11 9 14 14 C 1.35232 * 107.86568 * 180.16338 * 13 12 11 15 15 C 1.50703 * 126.06766 * 179.84878 * 14 13 12 16 16 N 1.34973 * 107.86541 * 359.58490 * 14 13 12 17 17 C 1.46498 * 125.97410 * 180.22663 * 16 14 13 18 18 C 1.50702 * 109.47036 * 90.00121 * 17 16 14 19 19 H 1.08000 * 120.00135 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00214 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99653 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00146 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47144 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47003 * 120.00274 * 22 20 18 25 25 H 1.48499 * 109.47189 * 240.00201 * 22 20 18 26 26 N 1.31229 * 125.97591 * 179.97438 * 12 11 9 27 27 C 1.39745 * 119.82579 * 0.25964 * 8 7 6 28 28 C 1.37698 * 119.90692 * 359.51220 * 27 8 7 29 29 H 1.07994 * 119.99217 * 180.02562 * 1 2 3 30 30 H 1.07994 * 120.00104 * 0.02562 * 1 2 3 31 31 H 1.07994 * 120.00104 * 179.97438 * 2 1 3 32 32 H 1.08992 * 109.47242 * 14.99601 * 3 2 1 33 33 H 1.08999 * 109.46688 * 254.99503 * 3 2 1 34 34 H 1.08002 * 119.95536 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.04249 * 179.97438 * 7 6 5 36 36 H 0.96996 * 119.99933 * 0.02562 * 11 9 8 37 37 H 1.07996 * 126.06589 * 0.02817 * 13 12 11 38 38 H 1.09002 * 109.47152 * 269.68932 * 15 14 13 39 39 H 1.09001 * 109.46980 * 149.69032 * 15 14 13 40 40 H 1.09004 * 109.47113 * 29.69013 * 15 14 13 41 41 H 1.09003 * 109.47000 * 209.99494 * 17 16 14 42 42 H 1.08996 * 109.47079 * 330.00441 * 17 16 14 43 43 H 0.96998 * 120.00028 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.04742 * 179.74112 * 27 8 7 45 45 H 1.08003 * 119.95489 * 180.21003 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3053 0.0000 4 8 3.1267 1.2415 0.9526 5 6 3.9085 2.3436 1.0780 6 6 4.9599 2.3478 1.9872 7 6 5.7552 3.4644 2.1178 8 6 5.5044 4.5940 1.3343 9 6 6.3539 5.7930 1.4715 10 8 7.2738 5.7986 2.2667 11 7 6.1101 6.8817 0.7154 12 6 6.9168 8.0196 0.8451 13 6 8.0105 8.1607 1.7146 14 6 8.5196 9.4017 1.5430 15 6 9.7006 9.9852 2.2750 16 7 7.7859 10.0228 0.5956 17 6 7.9977 11.3845 0.0983 18 6 8.9415 11.3493 -1.0760 19 1 9.3437 10.4069 -1.4176 20 6 9.2916 12.5201 -1.7145 21 7 8.8022 13.6677 -1.2983 22 14 10.4609 12.4764 -3.1706 23 1 10.8668 11.0731 -3.4375 24 1 9.7811 13.0320 -4.3682 25 1 11.6650 13.2894 -2.8632 26 7 6.7861 9.1382 0.1715 27 6 4.4433 4.5875 0.4250 28 6 3.6557 3.4653 0.2970 29 1 -0.5398 -0.9353 0.0004 30 1 -0.5400 0.9352 -0.0004 31 1 1.8501 -0.9352 0.0004 32 1 1.3855 2.1161 0.2659 33 1 2.4756 1.4868 -0.9926 34 1 5.1528 1.4745 2.5926 35 1 6.5717 3.4670 2.8248 36 1 5.3761 6.8773 0.0813 37 1 8.3782 7.4118 2.4004 38 1 9.3556 10.4896 3.1776 39 1 10.2097 10.7018 1.6304 40 1 10.3908 9.1863 2.5464 41 1 7.0440 11.8094 -0.2147 42 1 8.4264 11.9980 0.8907 43 1 9.0488 14.4914 -1.7472 44 1 4.2437 5.4601 -0.1793 45 1 2.8375 3.4582 -0.4080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348794294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:15 Heat of formation + Delta-G solvation = 54.756103 kcal Electronic energy + Delta-G solvation = -27416.185095 eV Core-core repulsion = 23401.647153 eV Total energy + Delta-G solvation = -4014.537942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.95049 -40.48628 -39.37672 -37.48571 -34.91640 -34.60967 -33.41233 -31.76933 -31.25899 -30.97148 -30.23765 -27.32013 -26.60813 -26.32780 -24.12832 -23.22855 -22.68378 -21.22318 -20.48245 -19.79233 -19.39533 -18.67498 -17.25456 -16.89417 -16.68620 -16.44500 -15.97159 -15.42133 -15.24702 -15.12282 -14.88443 -14.46882 -14.24383 -14.04578 -13.82214 -13.73786 -13.41315 -12.98923 -12.93068 -12.62107 -12.48676 -12.32176 -12.16772 -11.74044 -11.67097 -11.58833 -11.41787 -11.21947 -11.06702 -10.86398 -10.43183 -10.25648 -10.09409 -9.96394 -9.61567 -9.51719 -9.43846 -8.65578 -8.63859 -7.93392 -7.44739 -6.26300 -4.33913 0.60691 0.97879 1.48128 2.47570 2.75636 2.83157 2.90950 3.19730 3.27725 3.34033 3.45746 3.85818 3.87499 4.18957 4.29875 4.35295 4.41059 4.51080 4.60746 4.67798 4.81884 4.91399 5.04588 5.07384 5.22558 5.28596 5.43600 5.57806 5.70236 5.76920 5.86898 5.94211 5.95164 6.00368 6.03642 6.10673 6.25535 6.30038 6.47862 6.57144 6.74397 6.91220 6.93553 7.04884 7.44124 7.64786 7.67318 7.88274 8.05235 8.24851 8.64618 8.75022 9.32607 10.80933 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018648 B = 0.001845 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.106612 B =15173.894265 C =16093.404857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.158 4.158 3 C 0.084 3.916 4 O -0.308 6.308 5 C 0.154 3.846 6 C -0.160 4.160 7 C -0.016 4.016 8 C -0.166 4.166 9 C 0.567 3.433 10 O -0.515 6.515 11 N -0.627 5.627 12 C 0.263 3.737 13 C -0.289 4.289 14 C 0.092 3.908 15 C -0.089 4.089 16 N -0.316 5.316 17 C 0.258 3.742 18 C -0.536 4.536 19 H 0.065 0.935 20 C 0.065 3.935 21 N -0.891 5.891 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.280 1.280 26 N -0.321 5.321 27 C -0.043 4.043 28 C -0.217 4.217 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.121 0.879 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.408 0.592 37 H 0.160 0.840 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.267 0.733 44 H 0.132 0.868 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.223 -23.899 4.900 27.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C 0.009 3.991 4 O -0.221 6.221 5 C 0.108 3.892 6 C -0.178 4.178 7 C -0.035 4.035 8 C -0.169 4.169 9 C 0.355 3.645 10 O -0.390 6.390 11 N -0.275 5.275 12 C 0.011 3.989 13 C -0.320 4.320 14 C -0.040 4.040 15 C -0.147 4.147 16 N -0.099 5.099 17 C 0.140 3.860 18 C -0.574 4.574 19 H 0.083 0.917 20 C -0.138 4.138 21 N -0.529 5.529 22 Si 0.733 3.267 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.206 1.206 26 N -0.151 5.151 27 C -0.061 4.061 28 C -0.236 4.236 29 H 0.127 0.873 30 H 0.119 0.881 31 H 0.139 0.861 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.244 0.756 37 H 0.177 0.823 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.150 0.850 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.226 -23.142 4.593 27.047 hybrid contribution 0.393 -0.117 -0.965 1.049 sum -12.833 -23.259 3.628 26.811 Atomic orbital electron populations 1.23923 0.95419 1.02738 0.98500 1.22657 0.95667 0.97706 1.01599 1.21911 0.87788 0.97123 0.92254 1.86060 1.41969 1.35662 1.58426 1.19266 0.90418 0.85631 0.93887 1.20409 0.95956 1.00235 1.01233 1.21095 0.96945 0.89925 0.95486 1.19725 0.99344 0.95425 1.02455 1.18043 0.84148 0.82007 0.80343 1.90721 1.30424 1.82003 1.35881 1.42334 1.32551 1.11337 1.41237 1.18948 0.94010 0.87850 0.98097 1.21259 1.02063 0.98555 1.10082 1.21070 0.96170 0.93231 0.93508 1.20381 0.93692 1.01374 0.99251 1.48992 1.20252 1.13326 1.27281 1.19700 0.98776 0.71851 0.95658 1.21373 1.27698 0.94066 1.14303 0.91669 1.24930 0.96355 0.94930 0.97578 1.69929 1.43782 0.98077 1.41138 0.86305 0.80285 0.78374 0.81758 1.19573 1.20668 1.20625 1.77247 1.13955 0.99873 1.24063 1.21156 0.92331 0.97568 0.95080 1.21161 1.04153 0.94066 1.04199 0.87327 0.88124 0.86147 0.91101 0.90634 0.84326 0.83561 0.75575 0.82265 0.91065 0.89901 0.90587 0.92988 0.92750 0.92311 0.85033 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.69 14.31 29.01 0.42 -0.27 16 2 C -0.16 -0.82 9.89 -36.02 -0.36 -1.18 16 3 C 0.08 0.49 5.15 36.01 0.19 0.68 16 4 O -0.31 -2.63 10.11 -18.84 -0.19 -2.82 16 5 C 0.15 1.39 6.70 -39.02 -0.26 1.13 16 6 C -0.16 -1.46 9.97 -39.50 -0.39 -1.85 16 7 C -0.02 -0.16 9.58 -39.22 -0.38 -0.54 16 8 C -0.17 -1.94 5.87 -104.96 -0.62 -2.56 16 9 C 0.57 8.67 7.73 -12.45 -0.10 8.57 16 10 O -0.52 -9.30 13.46 5.28 0.07 -9.23 16 11 N -0.63 -10.06 5.40 -12.06 -0.07 -10.12 16 12 C 0.26 5.44 8.11 -154.44 -1.25 4.19 16 13 C -0.29 -6.02 9.52 -39.83 -0.38 -6.40 16 14 C 0.09 1.95 6.92 -82.28 -0.57 1.38 16 15 C -0.09 -1.52 9.89 36.01 0.36 -1.17 16 16 N -0.32 -7.54 3.59 -58.33 -0.21 -7.75 16 17 C 0.26 6.62 5.81 -5.19 -0.03 6.59 16 18 C -0.54 -14.77 9.39 -34.44 -0.32 -15.09 16 19 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 20 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -24.99 13.29 55.43 0.74 -24.25 16 22 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 N -0.32 -7.45 12.59 31.43 0.40 -7.06 16 27 C -0.04 -0.40 9.53 -39.22 -0.37 -0.77 16 28 C -0.22 -1.79 9.01 -39.50 -0.36 -2.15 16 29 H 0.11 0.32 8.06 -52.49 -0.42 -0.11 16 30 H 0.10 0.34 7.90 -52.49 -0.41 -0.08 16 31 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.07 0.35 7.37 -51.93 -0.38 -0.04 16 33 H 0.08 0.37 7.65 -51.93 -0.40 -0.03 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.15 1.48 7.64 -52.48 -0.40 1.08 16 36 H 0.41 5.26 6.84 -40.82 -0.28 4.99 16 37 H 0.16 3.22 5.91 -52.49 -0.31 2.91 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 1.52 7.71 -51.93 -0.40 1.12 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.05 1.38 7.65 -51.93 -0.40 0.98 16 43 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.13 0.99 6.40 -52.48 -0.34 0.65 16 45 H 0.13 0.78 6.28 -52.48 -0.33 0.45 16 LS Contribution 388.20 15.07 5.85 5.85 Total: -1.00 -33.17 388.20 -8.69 -41.85 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.73 Total: 5.20 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -4.52 Total: -7.76 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.86 Total: -49.18 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.12 Total: -12.05 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.17 -8.69 -41.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348794294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.609 kcal (2) G-P(sol) polarization free energy of solvation -33.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds