Wall clock time and date at job start Sat Apr 11 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50709 * 119.99448 * 2 1 4 4 O 1.42893 * 109.46909 * 135.00073 * 3 2 1 5 5 C 1.35713 * 117.00131 * 179.97438 * 4 3 2 6 6 C 1.38992 * 119.91265 * 179.97438 * 5 4 3 7 7 C 1.37709 * 120.08965 * 180.02562 * 6 5 4 8 8 C 1.39736 * 119.90665 * 359.97438 * 7 6 5 9 9 C 1.47584 * 120.08693 * 179.97438 * 8 7 6 10 10 O 1.21597 * 119.99881 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00036 * 180.02562 * 9 8 7 12 12 C 1.40093 * 120.00017 * 180.02562 * 11 9 8 13 13 C 1.40424 * 125.97441 * 0.27907 * 12 11 9 14 14 C 1.35232 * 107.86568 * 180.16338 * 13 12 11 15 15 C 1.50703 * 126.06766 * 179.84878 * 14 13 12 16 16 N 1.34973 * 107.86541 * 359.58490 * 14 13 12 17 17 C 1.46498 * 125.97410 * 180.22663 * 16 14 13 18 18 C 1.50702 * 109.47036 * 90.00121 * 17 16 14 19 19 H 1.08000 * 120.00135 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00214 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99653 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00146 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47144 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47003 * 120.00274 * 22 20 18 25 25 H 1.48499 * 109.47189 * 240.00201 * 22 20 18 26 26 N 1.31229 * 125.97591 * 179.97438 * 12 11 9 27 27 C 1.39745 * 119.82579 * 0.25964 * 8 7 6 28 28 C 1.37698 * 119.90692 * 359.51220 * 27 8 7 29 29 H 1.07994 * 119.99217 * 180.02562 * 1 2 3 30 30 H 1.07994 * 120.00104 * 0.02562 * 1 2 3 31 31 H 1.07994 * 120.00104 * 179.97438 * 2 1 3 32 32 H 1.08992 * 109.47242 * 14.99601 * 3 2 1 33 33 H 1.08999 * 109.46688 * 254.99503 * 3 2 1 34 34 H 1.08002 * 119.95536 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.04249 * 179.97438 * 7 6 5 36 36 H 0.96996 * 119.99933 * 0.02562 * 11 9 8 37 37 H 1.07996 * 126.06589 * 0.02817 * 13 12 11 38 38 H 1.09002 * 109.47152 * 269.68932 * 15 14 13 39 39 H 1.09001 * 109.46980 * 149.69032 * 15 14 13 40 40 H 1.09004 * 109.47113 * 29.69013 * 15 14 13 41 41 H 1.09003 * 109.47000 * 209.99494 * 17 16 14 42 42 H 1.08996 * 109.47079 * 330.00441 * 17 16 14 43 43 H 0.96998 * 120.00028 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.04742 * 179.74112 * 27 8 7 45 45 H 1.08003 * 119.95489 * 180.21003 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3053 0.0000 4 8 3.1267 1.2415 0.9526 5 6 3.9085 2.3436 1.0780 6 6 4.9599 2.3478 1.9872 7 6 5.7552 3.4644 2.1178 8 6 5.5044 4.5940 1.3343 9 6 6.3539 5.7930 1.4715 10 8 7.2738 5.7986 2.2667 11 7 6.1101 6.8817 0.7154 12 6 6.9168 8.0196 0.8451 13 6 8.0105 8.1607 1.7146 14 6 8.5196 9.4017 1.5430 15 6 9.7006 9.9852 2.2750 16 7 7.7859 10.0228 0.5956 17 6 7.9977 11.3845 0.0983 18 6 8.9415 11.3493 -1.0760 19 1 9.3437 10.4069 -1.4176 20 6 9.2916 12.5201 -1.7145 21 7 8.8022 13.6677 -1.2983 22 14 10.4609 12.4764 -3.1706 23 1 10.8668 11.0731 -3.4375 24 1 9.7811 13.0320 -4.3682 25 1 11.6650 13.2894 -2.8632 26 7 6.7861 9.1382 0.1715 27 6 4.4433 4.5875 0.4250 28 6 3.6557 3.4653 0.2970 29 1 -0.5398 -0.9353 0.0004 30 1 -0.5400 0.9352 -0.0004 31 1 1.8501 -0.9352 0.0004 32 1 1.3855 2.1161 0.2659 33 1 2.4756 1.4868 -0.9926 34 1 5.1528 1.4745 2.5926 35 1 6.5717 3.4670 2.8248 36 1 5.3761 6.8773 0.0813 37 1 8.3782 7.4118 2.4004 38 1 9.3556 10.4896 3.1776 39 1 10.2097 10.7018 1.6304 40 1 10.3908 9.1863 2.5464 41 1 7.0440 11.8094 -0.2147 42 1 8.4264 11.9980 0.8907 43 1 9.0488 14.4914 -1.7472 44 1 4.2437 5.4601 -0.1793 45 1 2.8375 3.4582 -0.4080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348794294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:14 Heat of formation + Delta-G solvation = 35.887135 kcal Electronic energy + Delta-G solvation = -27417.003315 eV Core-core repulsion = 23401.647153 eV Total energy + Delta-G solvation = -4015.356162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.36753 -41.44440 -40.50775 -38.28846 -36.40939 -35.35857 -34.99803 -33.21254 -32.67234 -32.10021 -31.22752 -28.63627 -27.89385 -27.65307 -25.44031 -24.47869 -23.77189 -22.37789 -21.34190 -20.85700 -20.78223 -19.38903 -18.81757 -18.37367 -17.84808 -17.35216 -17.08314 -16.74020 -16.56991 -16.30936 -16.00571 -15.65891 -15.51403 -15.27674 -14.74787 -14.51495 -14.35673 -14.31265 -13.96265 -13.81377 -13.70189 -13.58153 -13.50399 -13.33931 -13.15421 -12.83132 -12.69718 -12.27558 -12.24011 -12.17656 -12.08297 -11.79667 -11.58030 -11.36218 -11.00445 -10.73896 -10.44274 -10.14982 -9.61916 -9.40745 -9.10857 -8.33295 -6.50879 -0.25153 0.27465 0.99915 1.12526 1.31306 1.36682 1.38775 1.51342 1.54503 2.17161 2.25807 2.29735 2.39404 2.79472 2.96406 3.50301 3.62478 3.78962 3.89214 3.93434 4.09018 4.10796 4.13842 4.28876 4.35583 4.46988 4.52160 4.57113 4.75560 4.77309 4.86073 4.88695 4.95515 4.97483 4.99955 5.04990 5.12866 5.17001 5.21578 5.35503 5.53494 5.54266 5.63050 5.69834 5.80508 5.90942 6.24026 6.25243 6.29895 6.61772 6.95131 7.06033 7.20215 8.72866 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018648 B = 0.001845 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.106612 B =15173.894265 C =16093.404857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.177 4.177 3 C 0.076 3.924 4 O -0.318 6.318 5 C 0.157 3.843 6 C -0.163 4.163 7 C -0.019 4.019 8 C -0.186 4.186 9 C 0.569 3.431 10 O -0.547 6.547 11 N -0.621 5.621 12 C 0.272 3.728 13 C -0.299 4.299 14 C 0.088 3.912 15 C -0.086 4.086 16 N -0.341 5.341 17 C 0.275 3.725 18 C -0.553 4.553 19 H 0.049 0.951 20 C 0.024 3.976 21 N -0.917 5.917 22 Si 0.971 3.029 23 H -0.275 1.275 24 H -0.274 1.274 25 H -0.267 1.267 26 N -0.356 5.356 27 C -0.038 4.038 28 C -0.213 4.213 29 H 0.119 0.881 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.154 0.846 35 H 0.144 0.856 36 H 0.422 0.578 37 H 0.167 0.833 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.102 0.898 41 H 0.026 0.974 42 H 0.053 0.947 43 H 0.274 0.726 44 H 0.149 0.851 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.973 -25.530 4.326 29.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.195 4.195 3 C 0.003 3.997 4 O -0.231 6.231 5 C 0.111 3.889 6 C -0.182 4.182 7 C -0.038 4.038 8 C -0.190 4.190 9 C 0.359 3.641 10 O -0.424 6.424 11 N -0.270 5.270 12 C 0.018 3.982 13 C -0.330 4.330 14 C -0.042 4.042 15 C -0.144 4.144 16 N -0.124 5.124 17 C 0.156 3.844 18 C -0.591 4.591 19 H 0.067 0.933 20 C -0.177 4.177 21 N -0.555 5.555 22 Si 0.795 3.205 23 H -0.199 1.199 24 H -0.199 1.199 25 H -0.192 1.192 26 N -0.187 5.187 27 C -0.057 4.057 28 C -0.231 4.231 29 H 0.137 0.863 30 H 0.127 0.873 31 H 0.136 0.864 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.172 0.828 35 H 0.161 0.839 36 H 0.261 0.739 37 H 0.184 0.816 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.121 0.879 41 H 0.044 0.956 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.166 0.834 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -14.007 -24.798 4.020 28.763 hybrid contribution 0.472 0.197 -0.739 0.898 sum -13.535 -24.601 3.281 28.270 Atomic orbital electron populations 1.24131 0.95133 1.03728 0.96714 1.22690 0.96113 0.97474 1.03250 1.22160 0.87396 0.97968 0.92224 1.86062 1.42450 1.35425 1.59151 1.19429 0.90106 0.86002 0.93403 1.20553 0.95829 1.00219 1.01564 1.21121 0.97231 0.90084 0.95383 1.19508 1.00400 0.94236 1.04807 1.18658 0.83930 0.82340 0.79176 1.90685 1.31995 1.82561 1.37183 1.42439 1.32479 1.10218 1.41901 1.19281 0.93954 0.88228 0.96732 1.21447 1.02430 0.98589 1.10507 1.21756 0.96546 0.93309 0.92590 1.20509 0.92620 1.01962 0.99275 1.48798 1.21653 1.13125 1.28802 1.19268 0.96907 0.73119 0.95125 1.21467 1.28548 0.93701 1.15432 0.93299 1.25719 0.97661 0.94373 0.99987 1.70005 1.44575 0.98687 1.42253 0.85307 0.78538 0.78195 0.78425 1.19943 1.19930 1.19170 1.77167 1.14894 1.00864 1.25776 1.21340 0.91401 0.98623 0.94314 1.21428 1.04400 0.93117 1.04197 0.86266 0.87268 0.86352 0.89871 0.89559 0.82826 0.83866 0.73895 0.81563 0.88819 0.91341 0.87931 0.95636 0.92928 0.91720 0.83358 0.82029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 14.31 67.77 0.97 0.03 16 2 C -0.18 -1.50 9.89 25.64 0.25 -1.25 16 3 C 0.08 0.70 5.15 71.24 0.37 1.07 16 4 O -0.32 -4.72 10.11 -90.34 -0.91 -5.63 16 5 C 0.16 2.50 6.70 22.63 0.15 2.65 16 6 C -0.16 -2.74 9.97 22.33 0.22 -2.52 16 7 C -0.02 -0.39 9.58 22.51 0.22 -0.17 16 8 C -0.19 -4.20 5.87 -20.08 -0.12 -4.31 16 9 C 0.57 17.30 7.73 86.71 0.67 17.97 16 10 O -0.55 -19.91 13.46 -4.02 -0.05 -19.96 16 11 N -0.62 -19.82 5.40 -310.34 -1.67 -21.50 16 12 C 0.27 11.37 8.11 133.35 1.08 12.45 16 13 C -0.30 -12.55 9.52 22.11 0.21 -12.34 16 14 C 0.09 3.80 6.92 41.38 0.29 4.08 16 15 C -0.09 -2.90 9.89 71.24 0.70 -2.19 16 16 N -0.34 -16.75 3.59 -338.45 -1.22 -17.96 16 17 C 0.27 14.62 5.81 85.63 0.50 15.12 16 18 C -0.55 -31.20 9.39 25.60 0.24 -30.96 16 19 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 20 C 0.02 1.30 5.46 84.66 0.46 1.76 16 21 N -0.92 -51.74 13.29 21.45 0.28 -51.45 16 22 Si 0.97 43.20 29.54 68.60 2.03 45.22 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 N -0.36 -16.99 12.59 -54.48 -0.69 -17.67 16 27 C -0.04 -0.64 9.53 22.51 0.21 -0.43 16 28 C -0.21 -2.94 9.01 22.32 0.20 -2.74 16 29 H 0.12 0.43 8.06 -2.91 -0.02 0.40 16 30 H 0.11 0.44 7.90 -2.91 -0.02 0.42 16 31 H 0.12 1.01 8.06 -2.91 -0.02 0.98 16 32 H 0.08 0.56 7.37 -2.39 -0.02 0.54 16 33 H 0.09 0.60 7.65 -2.39 -0.02 0.58 16 34 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.14 2.91 7.64 -2.91 -0.02 2.89 16 36 H 0.42 10.64 6.84 -92.71 -0.63 10.00 16 37 H 0.17 6.74 5.91 -2.91 -0.02 6.72 16 38 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.07 2.52 7.71 -2.39 -0.02 2.50 16 40 H 0.10 2.89 8.14 -2.38 -0.02 2.87 16 41 H 0.03 1.46 8.14 -2.39 -0.02 1.45 16 42 H 0.05 2.76 7.65 -2.39 -0.02 2.75 16 43 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 44 H 0.15 1.91 6.40 -2.91 -0.02 1.89 16 45 H 0.16 1.29 6.28 -2.91 -0.02 1.28 16 Total: -1.00 -72.35 388.20 4.79 -67.56 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.39 Total: 23.19 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 6.63 Total: -1.79 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -3.29 Total: -108.59 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.97 Total: -25.59 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -72.35 4.79 -67.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348794294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.445 kcal (2) G-P(sol) polarization free energy of solvation -72.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds