Wall clock time and date at job start Sat Apr 11 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35243 * 126.07061 * 2 1 4 4 C 1.40406 * 107.86628 * 180.02562 * 3 2 1 5 5 N 1.40160 * 125.97376 * 180.02562 * 4 3 2 6 6 C 1.34781 * 119.99483 * 359.97438 * 5 4 3 7 7 O 1.21289 * 120.00432 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99589 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.69624 * 59.44625 * 8 6 5 10 10 C 1.53406 * 109.69280 * 298.85291 * 8 6 5 11 11 O 1.42839 * 108.37595 * 175.61052 * 10 8 6 12 12 C 1.35840 * 117.91867 * 48.98792 * 11 10 8 13 13 C 1.39144 * 118.49891 * 162.60557 * 12 11 10 14 14 C 1.37973 * 120.21556 * 179.80842 * 13 12 11 15 15 C 1.38293 * 119.95529 * 0.29554 * 14 13 12 16 16 C 1.38104 * 119.98565 * 0.10127 * 15 14 13 17 17 C 1.38378 * 121.80214 * 343.16503 * 12 11 10 18 18 C 1.50764 * 121.40968 * 0.07743 * 17 12 11 19 19 N 1.31221 * 108.05536 * 0.26045 * 4 3 2 20 20 N 1.34966 * 126.06626 * 180.02562 * 2 1 3 21 21 C 1.46497 * 125.98121 * 359.97438 * 20 2 1 22 22 C 1.50698 * 109.47230 * 89.99365 * 21 20 2 23 23 H 1.08000 * 119.99756 * 0.02562 * 22 21 20 24 24 C 1.37879 * 119.99857 * 180.02562 * 22 21 20 25 25 N 1.31510 * 119.99980 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 119.99868 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46676 * 90.00132 * 26 24 22 28 28 H 1.48491 * 109.46922 * 210.00325 * 26 24 22 29 29 H 1.48506 * 109.46939 * 330.00394 * 26 24 22 30 30 H 1.09012 * 109.46837 * 89.97402 * 1 2 3 31 31 H 1.08997 * 109.47610 * 209.97460 * 1 2 3 32 32 H 1.09002 * 109.46998 * 329.98110 * 1 2 3 33 33 H 1.07996 * 126.06136 * 0.02562 * 3 2 1 34 34 H 0.96990 * 120.00241 * 179.97438 * 5 4 3 35 35 H 1.08993 * 109.68607 * 295.32851 * 10 8 6 36 36 H 1.08995 * 109.68507 * 55.85670 * 10 8 6 37 37 H 1.08002 * 119.89570 * 0.09286 * 13 12 11 38 38 H 1.07998 * 120.02386 * 180.27041 * 14 13 12 39 39 H 1.08003 * 120.00895 * 180.02562 * 15 14 13 40 40 H 1.07998 * 119.84673 * 179.97438 * 16 15 14 41 41 H 1.09005 * 109.43534 * 102.45869 * 18 17 12 42 42 H 1.09000 * 109.43894 * 222.37662 * 18 17 12 43 43 H 1.08997 * 109.47302 * 209.99932 * 21 20 2 44 44 H 1.09007 * 109.46462 * 329.99929 * 21 20 2 45 45 H 0.97003 * 119.99642 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6371 0.6545 -0.0006 5 7 4.7735 1.4748 -0.0003 6 6 4.6367 2.8157 0.0001 7 8 3.5302 3.3124 0.0007 8 6 5.8586 3.6977 -0.0001 9 1 6.4614 3.4900 -0.8841 10 6 6.6862 3.4348 1.2645 11 8 7.8853 4.2070 1.1866 12 6 7.7747 5.5232 0.8691 13 6 8.8492 6.3643 1.1412 14 6 8.7765 7.7065 0.8296 15 6 7.6304 8.2199 0.2507 16 6 6.5589 7.3896 -0.0132 17 6 6.6257 6.0415 0.2983 18 6 5.4334 5.1682 0.0004 19 7 3.6336 -0.6577 -0.0066 20 7 2.3016 -1.0910 -0.0005 21 6 1.8500 -2.4846 -0.0006 22 6 1.6945 -2.9622 -1.4214 23 1 1.9108 -2.2945 -2.2422 24 6 1.2761 -4.2516 -1.6734 25 7 1.0122 -5.0644 -0.6738 26 14 1.0840 -4.8438 -3.4346 27 1 2.3648 -5.4330 -3.9011 28 1 0.0143 -5.8718 -3.4972 29 1 0.7202 -3.6972 -4.3055 30 1 -0.3633 0.0005 -1.0278 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3633 0.8898 0.5141 33 1 1.9719 2.1210 0.0004 34 1 5.6584 1.0776 -0.0004 35 1 6.1157 3.7306 2.1448 36 1 6.9347 2.3754 1.3270 37 1 9.7448 5.9645 1.5934 38 1 9.6140 8.3557 1.0381 39 1 7.5727 9.2703 0.0061 40 1 5.6647 7.7930 -0.4649 41 1 4.6698 5.3246 0.7625 42 1 5.0285 5.4283 -0.9776 43 1 2.5848 -3.1047 0.5128 44 1 0.8915 -2.5559 0.5137 45 1 0.7181 -5.9716 -0.8511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362382203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:29 Heat of formation + Delta-G solvation = 24.904817 kcal Electronic energy + Delta-G solvation = -28304.687898 eV Core-core repulsion = 24288.855507 eV Total energy + Delta-G solvation = -4015.832391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.36347 -40.65639 -39.36778 -37.75439 -35.05293 -34.51125 -33.42717 -31.71597 -31.14532 -30.67808 -30.52004 -26.85081 -26.43045 -26.06317 -24.98004 -23.12331 -22.82757 -21.75640 -20.27122 -19.91308 -19.18749 -18.19288 -17.36702 -16.76160 -16.72365 -16.11156 -15.93153 -15.62187 -15.33957 -15.06427 -14.61575 -14.46827 -14.20987 -14.11212 -13.85755 -13.65676 -13.49831 -13.29332 -12.98668 -12.52348 -12.35173 -12.24099 -12.10740 -11.82968 -11.73102 -11.49348 -11.44684 -11.21382 -11.13276 -10.93939 -10.85512 -10.51745 -10.28191 -10.01743 -9.68126 -9.58696 -9.10639 -8.67499 -8.48979 -8.01688 -7.53891 -6.28902 -4.36555 0.98647 1.09938 2.13751 2.59581 2.81107 2.91451 3.19425 3.25773 3.30197 3.43379 3.60822 3.74368 4.09105 4.23271 4.27134 4.37238 4.48989 4.62395 4.73156 4.83311 4.98242 5.05066 5.08028 5.13094 5.20411 5.31334 5.40982 5.57232 5.63201 5.64562 5.75963 5.85452 5.95372 6.06528 6.13425 6.16928 6.21192 6.38293 6.43243 6.45357 6.63250 6.87712 7.00864 7.08232 7.34754 7.54040 7.63518 7.84897 7.98706 8.08950 8.57848 8.70781 9.29900 10.78439 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.025777 B = 0.001977 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.994620 B =14159.085984 C =14448.705258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.092 3.908 3 C -0.290 4.290 4 C 0.261 3.739 5 N -0.629 5.629 6 C 0.528 3.472 7 O -0.508 6.508 8 C -0.142 4.142 9 H 0.116 0.884 10 C 0.072 3.928 11 O -0.309 6.309 12 C 0.127 3.873 13 C -0.147 4.147 14 C -0.091 4.091 15 C -0.151 4.151 16 C -0.083 4.083 17 C -0.154 4.154 18 C -0.060 4.060 19 N -0.318 5.318 20 N -0.315 5.315 21 C 0.258 3.742 22 C -0.536 4.536 23 H 0.064 0.936 24 C 0.066 3.934 25 N -0.891 5.891 26 Si 0.906 3.094 27 H -0.277 1.277 28 H -0.283 1.283 29 H -0.272 1.272 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.159 0.841 34 H 0.411 0.589 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.590 23.090 3.938 26.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.039 4.039 3 C -0.321 4.321 4 C 0.008 3.992 5 N -0.276 5.276 6 C 0.313 3.687 7 O -0.381 6.381 8 C -0.164 4.164 9 H 0.134 0.866 10 C -0.004 4.004 11 O -0.223 6.223 12 C 0.082 3.918 13 C -0.166 4.166 14 C -0.109 4.109 15 C -0.170 4.170 16 C -0.101 4.101 17 C -0.155 4.155 18 C -0.097 4.097 19 N -0.149 5.149 20 N -0.097 5.097 21 C 0.140 3.860 22 C -0.575 4.575 23 H 0.082 0.918 24 C -0.138 4.138 25 N -0.529 5.529 26 Si 0.733 3.267 27 H -0.203 1.203 28 H -0.208 1.208 29 H -0.197 1.197 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.177 0.823 34 H 0.246 0.754 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.577 21.974 4.032 25.162 hybrid contribution -0.230 -0.106 -1.094 1.123 sum 11.347 21.868 2.938 24.811 Atomic orbital electron populations 1.20342 0.87814 1.02872 1.03231 1.21081 0.94966 0.87146 1.00739 1.21228 0.89680 0.99790 1.21443 1.18970 0.87122 0.89622 1.03468 1.42488 1.07712 1.05023 1.72418 1.20125 0.90654 0.81412 0.76556 1.90667 1.26408 1.73731 1.47245 1.21990 0.96072 0.96494 1.01814 0.86588 1.22968 0.84771 0.96419 0.96236 1.86034 1.32777 1.18320 1.85149 1.18744 0.94310 0.83267 0.95491 1.20611 0.98731 0.92765 1.04464 1.20941 0.98040 0.94280 0.97614 1.21042 0.93891 0.99992 1.02036 1.20925 0.98758 0.92041 0.98367 1.19862 0.95807 0.95688 1.04168 1.20329 0.95146 0.89651 1.04577 1.77268 1.00014 1.08448 1.29162 1.49016 1.00929 1.07846 1.51929 1.19712 0.96018 0.71236 0.99004 1.21305 1.46874 0.97991 0.91320 0.91773 1.24928 0.94634 0.96073 0.98146 1.69916 1.44850 1.07107 1.31026 0.86351 0.78038 0.78586 0.83691 1.20320 1.20848 1.19671 0.90370 0.90801 0.90793 0.82349 0.75392 0.90631 0.86694 0.85189 0.85450 0.85833 0.85575 0.88815 0.89048 0.92963 0.92722 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 10.11 36.00 0.36 -1.05 16 2 C 0.09 1.90 6.92 -82.28 -0.57 1.33 16 3 C -0.29 -5.78 9.52 -39.83 -0.38 -6.16 16 4 C 0.26 5.08 8.11 -154.39 -1.25 3.83 16 5 N -0.63 -9.03 5.33 -11.13 -0.06 -9.09 16 6 C 0.53 6.91 7.12 -10.98 -0.08 6.84 16 7 O -0.51 -8.21 12.92 5.55 0.07 -8.14 16 8 C -0.14 -1.34 2.75 -91.52 -0.25 -1.60 16 9 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 10 C 0.07 0.62 6.26 37.37 0.23 0.85 16 11 O -0.31 -3.10 10.27 -19.24 -0.20 -3.29 16 12 C 0.13 1.26 6.47 -39.19 -0.25 1.01 16 13 C -0.15 -1.28 9.94 -39.34 -0.39 -1.67 16 14 C -0.09 -0.66 10.04 -39.66 -0.40 -1.06 16 15 C -0.15 -1.12 10.04 -39.61 -0.40 -1.51 16 16 C -0.08 -0.68 9.67 -39.53 -0.38 -1.07 16 17 C -0.15 -1.46 5.75 -104.44 -0.60 -2.06 16 18 C -0.06 -0.57 4.67 -27.81 -0.13 -0.70 16 19 N -0.32 -7.15 12.59 31.44 0.40 -6.76 16 20 N -0.31 -7.32 3.59 -58.33 -0.21 -7.53 16 21 C 0.26 6.52 5.99 -5.20 -0.03 6.49 16 22 C -0.54 -14.62 9.39 -34.44 -0.32 -14.95 16 23 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 24 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 25 N -0.89 -24.80 13.29 55.43 0.74 -24.07 16 26 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 30 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 31 H 0.07 1.24 7.07 -51.93 -0.37 0.87 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.16 3.04 5.92 -52.49 -0.31 2.73 16 34 H 0.41 4.66 8.30 -40.82 -0.34 4.32 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.12 0.79 7.57 -51.93 -0.39 0.40 16 37 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.12 0.65 8.06 -52.48 -0.42 0.22 16 40 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.09 0.96 7.69 -51.93 -0.40 0.56 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 44 H 0.06 1.36 7.04 -51.92 -0.37 1.00 16 45 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 377.84 15.07 5.69 5.69 Total: -1.00 -32.44 377.84 -9.47 -41.91 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.95 Total: 5.14 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -4.94 Total: -9.79 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 0.86 Total: -47.45 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.13 Total: -11.43 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.44 -9.47 -41.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362382203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.816 kcal (2) G-P(sol) polarization free energy of solvation -32.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds