Wall clock time and date at job start Sat Apr 11 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35243 * 126.07061 * 2 1 4 4 C 1.40406 * 107.86628 * 180.02562 * 3 2 1 5 5 N 1.40160 * 125.97376 * 180.02562 * 4 3 2 6 6 C 1.34781 * 119.99483 * 359.97438 * 5 4 3 7 7 O 1.21289 * 120.00432 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99589 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.69624 * 59.44625 * 8 6 5 10 10 C 1.53406 * 109.69280 * 298.85291 * 8 6 5 11 11 O 1.42839 * 108.37595 * 175.61052 * 10 8 6 12 12 C 1.35840 * 117.91867 * 48.98792 * 11 10 8 13 13 C 1.39144 * 118.49891 * 162.60557 * 12 11 10 14 14 C 1.37973 * 120.21556 * 179.80842 * 13 12 11 15 15 C 1.38293 * 119.95529 * 0.29554 * 14 13 12 16 16 C 1.38104 * 119.98565 * 0.10127 * 15 14 13 17 17 C 1.38378 * 121.80214 * 343.16503 * 12 11 10 18 18 C 1.50764 * 121.40968 * 0.07743 * 17 12 11 19 19 N 1.31221 * 108.05536 * 0.26045 * 4 3 2 20 20 N 1.34966 * 126.06626 * 180.02562 * 2 1 3 21 21 C 1.46497 * 125.98121 * 359.97438 * 20 2 1 22 22 C 1.50698 * 109.47230 * 89.99365 * 21 20 2 23 23 H 1.08000 * 119.99756 * 0.02562 * 22 21 20 24 24 C 1.37879 * 119.99857 * 180.02562 * 22 21 20 25 25 N 1.31510 * 119.99980 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 119.99868 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46676 * 90.00132 * 26 24 22 28 28 H 1.48491 * 109.46922 * 210.00325 * 26 24 22 29 29 H 1.48506 * 109.46939 * 330.00394 * 26 24 22 30 30 H 1.09012 * 109.46837 * 89.97402 * 1 2 3 31 31 H 1.08997 * 109.47610 * 209.97460 * 1 2 3 32 32 H 1.09002 * 109.46998 * 329.98110 * 1 2 3 33 33 H 1.07996 * 126.06136 * 0.02562 * 3 2 1 34 34 H 0.96990 * 120.00241 * 179.97438 * 5 4 3 35 35 H 1.08993 * 109.68607 * 295.32851 * 10 8 6 36 36 H 1.08995 * 109.68507 * 55.85670 * 10 8 6 37 37 H 1.08002 * 119.89570 * 0.09286 * 13 12 11 38 38 H 1.07998 * 120.02386 * 180.27041 * 14 13 12 39 39 H 1.08003 * 120.00895 * 180.02562 * 15 14 13 40 40 H 1.07998 * 119.84673 * 179.97438 * 16 15 14 41 41 H 1.09005 * 109.43534 * 102.45869 * 18 17 12 42 42 H 1.09000 * 109.43894 * 222.37662 * 18 17 12 43 43 H 1.08997 * 109.47302 * 209.99932 * 21 20 2 44 44 H 1.09007 * 109.46462 * 329.99929 * 21 20 2 45 45 H 0.97003 * 119.99642 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6371 0.6545 -0.0006 5 7 4.7735 1.4748 -0.0003 6 6 4.6367 2.8157 0.0001 7 8 3.5302 3.3124 0.0007 8 6 5.8586 3.6977 -0.0001 9 1 6.4614 3.4900 -0.8841 10 6 6.6862 3.4348 1.2645 11 8 7.8853 4.2070 1.1866 12 6 7.7747 5.5232 0.8691 13 6 8.8492 6.3643 1.1412 14 6 8.7765 7.7065 0.8296 15 6 7.6304 8.2199 0.2507 16 6 6.5589 7.3896 -0.0132 17 6 6.6257 6.0415 0.2983 18 6 5.4334 5.1682 0.0004 19 7 3.6336 -0.6577 -0.0066 20 7 2.3016 -1.0910 -0.0005 21 6 1.8500 -2.4846 -0.0006 22 6 1.6945 -2.9622 -1.4214 23 1 1.9108 -2.2945 -2.2422 24 6 1.2761 -4.2516 -1.6734 25 7 1.0122 -5.0644 -0.6738 26 14 1.0840 -4.8438 -3.4346 27 1 2.3648 -5.4330 -3.9011 28 1 0.0143 -5.8718 -3.4972 29 1 0.7202 -3.6972 -4.3055 30 1 -0.3633 0.0005 -1.0278 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3633 0.8898 0.5141 33 1 1.9719 2.1210 0.0004 34 1 5.6584 1.0776 -0.0004 35 1 6.1157 3.7306 2.1448 36 1 6.9347 2.3754 1.3270 37 1 9.7448 5.9645 1.5934 38 1 9.6140 8.3557 1.0381 39 1 7.5727 9.2703 0.0061 40 1 5.6647 7.7930 -0.4649 41 1 4.6698 5.3246 0.7625 42 1 5.0285 5.4283 -0.9776 43 1 2.5848 -3.1047 0.5128 44 1 0.8915 -2.5559 0.5137 45 1 0.7181 -5.9716 -0.8511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362382203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:28 Heat of formation + Delta-G solvation = 6.476641 kcal Electronic energy + Delta-G solvation = -28305.487003 eV Core-core repulsion = 24288.855507 eV Total energy + Delta-G solvation = -4016.631496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.46730 -41.84941 -40.50871 -38.41022 -36.45637 -35.41204 -35.24418 -33.14930 -32.67199 -31.70391 -31.17080 -28.65873 -27.90906 -26.79362 -26.02637 -24.78566 -23.55169 -22.86234 -21.34386 -21.28514 -20.44937 -18.86388 -18.82482 -18.37394 -17.84055 -17.32223 -16.96714 -16.73542 -16.59873 -16.17721 -16.00241 -15.71633 -15.26225 -15.07923 -14.78232 -14.74842 -14.38208 -14.32320 -14.15581 -13.88739 -13.81952 -13.70274 -13.53452 -13.14758 -12.87346 -12.72787 -12.68578 -12.50008 -12.26153 -12.17712 -12.10979 -11.87647 -11.66914 -11.53172 -11.38701 -10.94136 -10.74471 -9.72991 -9.61943 -9.18170 -9.14141 -8.34026 -6.51394 0.37016 0.47340 0.83335 1.24997 1.33790 1.37273 1.38879 1.49943 2.12942 2.15131 2.28581 2.37876 2.82032 2.96011 3.26726 3.41120 3.54264 3.81179 3.84808 3.95132 4.06475 4.13956 4.28623 4.34647 4.40972 4.43194 4.51371 4.60789 4.70098 4.70252 4.75943 4.85266 4.87943 4.93777 4.97411 4.98546 5.09765 5.13484 5.23104 5.35106 5.52555 5.53466 5.62350 5.79780 5.85944 5.89816 6.19043 6.23560 6.41434 6.60405 6.89596 7.04041 7.19503 8.72020 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.025777 B = 0.001977 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.994620 B =14159.085984 C =14448.705258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.087 3.913 3 C -0.298 4.298 4 C 0.272 3.728 5 N -0.621 5.621 6 C 0.534 3.466 7 O -0.535 6.535 8 C -0.127 4.127 9 H 0.132 0.868 10 C 0.072 3.928 11 O -0.317 6.317 12 C 0.104 3.896 13 C -0.159 4.159 14 C -0.090 4.090 15 C -0.152 4.152 16 C -0.092 4.092 17 C -0.167 4.167 18 C -0.056 4.056 19 N -0.356 5.356 20 N -0.341 5.341 21 C 0.274 3.726 22 C -0.553 4.553 23 H 0.049 0.951 24 C 0.023 3.977 25 N -0.917 5.917 26 Si 0.971 3.029 27 H -0.275 1.275 28 H -0.271 1.271 29 H -0.270 1.270 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.168 0.832 34 H 0.425 0.575 35 H 0.074 0.926 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.154 0.846 39 H 0.147 0.853 40 H 0.139 0.861 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.025 0.975 44 H 0.053 0.947 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.298 24.943 3.152 27.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 C -0.329 4.329 4 C 0.018 3.982 5 N -0.271 5.271 6 C 0.321 3.679 7 O -0.410 6.410 8 C -0.149 4.149 9 H 0.150 0.850 10 C -0.004 4.004 11 O -0.231 6.231 12 C 0.060 3.940 13 C -0.178 4.178 14 C -0.108 4.108 15 C -0.170 4.170 16 C -0.110 4.110 17 C -0.167 4.167 18 C -0.094 4.094 19 N -0.186 5.186 20 N -0.124 5.124 21 C 0.156 3.844 22 C -0.591 4.591 23 H 0.067 0.933 24 C -0.178 4.178 25 N -0.555 5.555 26 Si 0.794 3.206 27 H -0.200 1.200 28 H -0.195 1.195 29 H -0.194 1.194 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.186 0.814 34 H 0.264 0.736 35 H 0.092 0.908 36 H 0.150 0.850 37 H 0.156 0.844 38 H 0.171 0.829 39 H 0.165 0.835 40 H 0.157 0.843 41 H 0.102 0.898 42 H 0.111 0.889 43 H 0.043 0.957 44 H 0.070 0.930 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.310 23.850 3.257 27.037 hybrid contribution -0.385 -0.505 -0.801 1.022 sum 11.926 23.345 2.455 26.330 Atomic orbital electron populations 1.20475 0.85385 1.04249 1.03937 1.21763 0.96681 0.86508 0.99413 1.21433 0.89905 0.99920 1.21652 1.19302 0.88737 0.89211 1.00967 1.42623 1.07093 1.05071 1.72329 1.20759 0.91404 0.80861 0.74878 1.90646 1.27979 1.74069 1.48268 1.21931 0.94313 0.95537 1.03091 0.84991 1.23044 0.84522 0.97312 0.95499 1.86028 1.33064 1.18617 1.85389 1.19010 0.95079 0.83426 0.96510 1.20877 0.98803 0.93407 1.04687 1.21300 0.98843 0.94053 0.96567 1.21388 0.93426 1.01098 1.01135 1.21185 0.99727 0.91759 0.98352 1.19904 0.95578 0.96277 1.04986 1.20278 0.95153 0.89608 1.04338 1.77189 1.00057 1.10017 1.31385 1.48794 1.01768 1.07535 1.54286 1.19258 0.94976 0.72411 0.97792 1.21423 1.47530 0.98367 0.91759 0.93264 1.25725 0.93967 0.95969 1.02175 1.69997 1.45044 1.07533 1.32951 0.85366 0.78264 0.78194 0.78731 1.20014 1.19536 1.19444 0.89857 0.91284 0.87512 0.81438 0.73641 0.90808 0.84962 0.84369 0.82884 0.83494 0.84318 0.89838 0.88897 0.95690 0.92952 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.70 10.11 71.24 0.72 -1.98 16 2 C 0.09 3.59 6.92 41.39 0.29 3.87 16 3 C -0.30 -11.79 9.52 22.11 0.21 -11.58 16 4 C 0.27 10.59 8.11 133.32 1.08 11.68 16 5 N -0.62 -17.35 5.33 -307.51 -1.64 -18.99 16 6 C 0.53 13.46 7.12 87.66 0.62 14.09 16 7 O -0.54 -16.92 12.92 -3.06 -0.04 -16.96 16 8 C -0.13 -2.25 2.75 -11.38 -0.03 -2.28 16 9 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 10 C 0.07 1.15 6.26 72.12 0.45 1.60 16 11 O -0.32 -6.00 10.27 -91.75 -0.94 -6.94 16 12 C 0.10 1.96 6.47 22.52 0.15 2.11 16 13 C -0.16 -2.52 9.94 22.42 0.22 -2.30 16 14 C -0.09 -1.10 10.04 22.22 0.22 -0.88 16 15 C -0.15 -1.88 10.04 22.25 0.22 -1.65 16 16 C -0.09 -1.37 9.67 22.30 0.22 -1.16 16 17 C -0.17 -2.97 5.75 -19.75 -0.11 -3.08 16 18 C -0.06 -1.02 4.67 29.89 0.14 -0.88 16 19 N -0.36 -16.32 12.59 -54.45 -0.69 -17.01 16 20 N -0.34 -16.29 3.59 -338.45 -1.22 -17.50 16 21 C 0.27 14.39 5.99 85.63 0.51 14.90 16 22 C -0.55 -30.77 9.39 25.60 0.24 -30.53 16 23 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 24 C 0.02 1.24 5.46 84.66 0.46 1.70 16 25 N -0.92 -51.48 13.29 21.45 0.28 -51.19 16 26 Si 0.97 42.84 29.54 68.60 2.03 44.87 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 29 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 30 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 31 H 0.07 2.32 7.07 -2.39 -0.02 2.30 16 32 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.17 6.30 5.92 -2.91 -0.02 6.29 16 34 H 0.43 9.20 8.30 -92.72 -0.77 8.43 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.13 1.61 7.57 -2.39 -0.02 1.59 16 37 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 38 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 40 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 41 H 0.08 1.67 7.69 -2.38 -0.02 1.65 16 42 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.05 2.72 7.04 -2.38 -0.02 2.70 16 45 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -70.40 377.84 3.66 -66.74 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.26 Total: 23.37 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 5.61 Total: -6.38 kcal Atomic # 7 Polarization: -101.44 SS G_CDS: -3.26 Total: -104.70 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.98 Total: -23.90 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -70.40 3.66 -66.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362382203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.218 kcal (2) G-P(sol) polarization free energy of solvation -70.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds