Wall clock time and date at job start Sat Apr 11 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38289 * 120.01324 * 2 1 4 4 C 1.37959 * 119.96275 * 180.08198 * 3 2 1 5 5 C 1.39146 * 120.21681 * 0.04195 * 4 3 2 6 6 C 1.38366 * 119.68957 * 359.81660 * 5 4 3 7 7 C 1.38102 * 120.00614 * 180.02562 * 2 1 3 8 8 C 1.50778 * 121.40884 * 180.30414 * 6 5 4 9 9 C 1.53068 * 109.69088 * 342.21845 * 8 6 5 10 10 C 1.53408 * 108.29094 * 48.18582 * 9 8 6 11 11 H 1.08998 * 109.68665 * 55.07243 * 10 9 8 12 12 C 1.50699 * 109.67811 * 175.58588 * 10 9 8 13 13 O 1.21302 * 119.99902 * 114.48358 * 12 10 9 14 14 N 1.34777 * 120.00251 * 294.48270 * 12 10 9 15 15 C 1.40154 * 120.00077 * 180.02562 * 14 12 10 16 16 C 1.40413 * 125.97578 * 359.97438 * 15 14 12 17 17 C 1.35239 * 107.86890 * 179.74156 * 16 15 14 18 18 N 1.34973 * 107.85936 * 0.39108 * 17 16 15 19 19 C 1.46499 * 125.97185 * 179.87323 * 18 17 16 20 20 C 1.50701 * 109.46992 * 124.71561 * 19 18 17 21 21 H 1.07998 * 120.00129 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99861 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99913 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99734 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47432 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46890 * 120.00210 * 24 22 20 27 27 H 1.48501 * 109.47062 * 240.00257 * 24 22 20 28 28 N 1.31221 * 125.97212 * 179.97438 * 15 14 12 29 29 O 1.35848 * 118.50030 * 179.75612 * 5 4 3 30 30 H 1.09009 * 109.47364 * 269.98143 * 1 2 3 31 31 H 1.09004 * 109.47218 * 29.97938 * 1 2 3 32 32 H 1.09000 * 109.47162 * 149.98003 * 1 2 3 33 33 H 1.08008 * 120.01406 * 0.10126 * 3 2 1 34 34 H 1.08001 * 119.89306 * 179.97438 * 4 3 2 35 35 H 1.08005 * 119.84625 * 359.97438 * 7 2 1 36 36 H 1.09005 * 109.43603 * 102.26178 * 8 6 5 37 37 H 1.08989 * 109.44122 * 222.17844 * 8 6 5 38 38 H 1.08993 * 109.66805 * 288.50215 * 9 8 6 39 39 H 1.09004 * 109.72357 * 167.89470 * 9 8 6 40 40 H 0.97001 * 119.99775 * 359.97438 * 14 12 10 41 41 H 1.08004 * 126.06353 * 0.02562 * 16 15 14 42 42 H 1.08002 * 126.06745 * 180.26809 * 17 16 15 43 43 H 1.09002 * 109.47391 * 4.71551 * 19 18 17 44 44 H 1.09001 * 109.46813 * 244.71607 * 19 18 17 45 45 H 0.97002 * 119.99768 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1987 1.1975 0.0000 4 6 3.5783 1.1962 -0.0017 5 6 4.2775 -0.0068 -0.0043 6 6 3.5827 -1.2033 -0.0013 7 6 2.1976 -1.1959 -0.0005 8 6 4.3009 -2.5290 0.0028 9 6 5.7535 -2.3300 -0.4370 10 6 6.3397 -1.1545 0.3554 11 1 6.2216 -1.3365 1.4236 12 6 7.8020 -0.9993 0.0257 13 8 8.1919 -0.0048 -0.5490 14 7 8.6766 -1.9655 0.3695 15 6 10.0366 -1.8208 0.0633 16 6 10.6222 -0.7277 -0.5953 17 6 11.9498 -0.9653 -0.6940 18 7 12.1987 -2.1656 -0.1290 19 6 13.5094 -2.8111 -0.0220 20 6 13.7901 -3.1418 1.4213 21 1 13.0645 -2.8961 2.1826 22 6 14.9728 -3.7590 1.7697 23 7 15.8561 -4.0586 0.8426 24 14 15.3203 -4.1695 3.5585 25 1 14.1759 -3.7329 4.3981 26 1 15.5082 -5.6356 3.7024 27 1 16.5530 -3.4671 3.9971 28 7 10.9854 -2.6834 0.3421 29 8 5.6354 0.0327 -0.0110 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6591 2.1331 0.0017 34 1 4.1174 2.1321 -0.0021 35 1 1.6552 -2.1299 -0.0005 36 1 4.2812 -2.9491 1.0085 37 1 3.8045 -3.2127 -0.6856 38 1 5.7866 -2.1073 -1.5034 39 1 6.3271 -3.2339 -0.2318 40 1 8.3649 -2.7606 0.8294 41 1 10.1047 0.1496 -0.9547 42 1 12.6809 -0.3116 -1.1465 43 1 14.2788 -2.1357 -0.3962 44 1 13.5122 -3.7276 -0.6120 45 1 16.6883 -4.4925 1.0878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373504260.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:37 Heat of formation + Delta-G solvation = 29.353166 kcal Electronic energy + Delta-G solvation = -28020.302832 eV Core-core repulsion = 24004.663336 eV Total energy + Delta-G solvation = -4015.639496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.34035 -40.59367 -39.30825 -37.83426 -35.05515 -34.55471 -33.39843 -32.59123 -31.30714 -30.61145 -29.36841 -28.06892 -26.73297 -25.91933 -23.89717 -23.17440 -22.66912 -21.81716 -20.47510 -19.92380 -19.60225 -18.18499 -17.54058 -16.70649 -16.61892 -16.46715 -15.70441 -15.33302 -15.30718 -14.91384 -14.69714 -14.39044 -14.30487 -14.18831 -14.03368 -13.72705 -13.58274 -13.24430 -12.94830 -12.79355 -12.63685 -12.38277 -12.28558 -12.01939 -11.80086 -11.67511 -11.45909 -11.25652 -11.07764 -10.89734 -10.77014 -10.49659 -10.29141 -10.04048 -9.59854 -9.52276 -9.10655 -8.66543 -8.30490 -8.19528 -7.53683 -6.27163 -4.32267 0.99680 1.08991 2.15543 2.20698 2.85692 3.17712 3.20411 3.28067 3.34480 3.40118 3.62617 3.80021 4.11774 4.26369 4.31942 4.32355 4.44578 4.57443 4.60251 4.78177 4.83117 4.97447 5.07865 5.08312 5.13887 5.25306 5.31810 5.39627 5.48431 5.49552 5.59729 5.63081 5.73604 5.75310 5.96386 6.10181 6.16888 6.28933 6.42479 6.45643 6.55217 6.81982 7.01619 7.13089 7.29821 7.50135 7.67953 7.84982 7.99621 8.10495 8.56988 8.77134 9.33591 10.81630 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.001868 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.386310 B =14986.097565 C =15415.139589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.121 4.121 3 C -0.088 4.088 4 C -0.140 4.140 5 C 0.131 3.869 6 C -0.158 4.158 7 C -0.084 4.084 8 C -0.076 4.076 9 C -0.152 4.152 10 C 0.083 3.917 11 H 0.103 0.897 12 C 0.526 3.474 13 O -0.491 6.491 14 N -0.625 5.625 15 C 0.257 3.743 16 C -0.287 4.287 17 C 0.053 3.947 18 N -0.317 5.317 19 C 0.257 3.743 20 C -0.529 4.529 21 H 0.069 0.931 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.908 3.092 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.281 1.281 28 N -0.301 5.301 29 O -0.287 6.287 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.124 0.876 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.411 0.589 41 H 0.160 0.840 42 H 0.169 0.831 43 H 0.058 0.942 44 H 0.046 0.954 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.585 5.435 -2.194 29.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.121 4.121 3 C -0.106 4.106 4 C -0.159 4.159 5 C 0.085 3.915 6 C -0.159 4.159 7 C -0.102 4.102 8 C -0.113 4.113 9 C -0.190 4.190 10 C 0.023 3.977 11 H 0.120 0.880 12 C 0.310 3.690 13 O -0.363 6.363 14 N -0.274 5.274 15 C 0.004 3.996 16 C -0.319 4.319 17 C -0.097 4.097 18 N -0.099 5.099 19 C 0.140 3.860 20 C -0.567 4.567 21 H 0.088 0.912 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.735 3.265 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.207 1.207 28 N -0.133 5.133 29 O -0.200 6.200 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.142 0.858 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.247 0.753 41 H 0.177 0.823 42 H 0.186 0.814 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -27.607 5.065 -2.168 28.151 hybrid contribution 0.064 -0.128 0.863 0.875 sum -27.542 4.936 -1.305 28.012 Atomic orbital electron populations 1.20717 0.91058 1.02640 1.02150 1.19789 0.96176 0.93018 1.03160 1.20813 0.92911 0.97836 0.99014 1.20610 0.93787 0.96516 1.04948 1.18721 0.81836 0.93535 0.97376 1.19817 0.94533 0.94145 1.07439 1.20748 0.92430 0.97815 0.99242 1.20495 0.93750 0.94126 1.02882 1.22262 0.96872 0.98043 1.01786 1.22097 0.89460 0.85670 1.00499 0.87987 1.19805 0.86385 0.83081 0.79753 1.90696 1.78383 1.28582 1.38590 1.42171 1.03965 1.22470 1.58774 1.19008 0.83894 0.95677 1.01004 1.21531 0.92975 1.02978 1.14370 1.22576 0.97140 0.89973 0.99992 1.49105 1.06977 1.13654 1.40157 1.19777 0.72841 0.94003 0.99386 1.21295 1.03484 1.40127 0.91824 0.91231 1.24948 0.95574 0.95062 0.98506 1.69925 1.08977 1.41386 1.32991 0.86272 0.78276 0.78145 0.83801 1.19570 1.20689 1.20743 1.77331 0.89831 1.21844 1.24260 1.86064 1.15397 1.34769 1.83742 0.91417 0.91648 0.91727 0.85398 0.84923 0.85806 0.89872 0.89337 0.89365 0.88686 0.75308 0.82279 0.81356 0.92445 0.93634 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 10.01 36.00 0.36 -0.20 16 2 C -0.12 -0.94 5.88 -104.65 -0.62 -1.55 16 3 C -0.09 -0.72 9.70 -39.66 -0.38 -1.10 16 4 C -0.14 -1.41 9.94 -39.35 -0.39 -1.80 16 5 C 0.13 1.46 6.47 -39.20 -0.25 1.20 16 6 C -0.16 -1.45 5.75 -104.44 -0.60 -2.05 16 7 C -0.08 -0.67 9.32 -39.53 -0.37 -1.04 16 8 C -0.08 -0.52 5.86 -27.81 -0.16 -0.69 16 9 C -0.15 -1.25 5.46 -26.48 -0.14 -1.40 16 10 C 0.08 0.90 3.21 -27.67 -0.09 0.81 16 11 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 12 C 0.53 7.63 7.16 -10.99 -0.08 7.55 16 13 O -0.49 -9.00 13.65 -14.22 -0.19 -9.20 16 14 N -0.62 -9.23 5.40 -11.13 -0.06 -9.29 16 15 C 0.26 5.04 8.11 -154.39 -1.25 3.79 16 16 C -0.29 -5.67 9.61 -39.83 -0.38 -6.05 16 17 C 0.05 1.05 11.44 -17.24 -0.20 0.86 16 18 N -0.32 -7.26 3.67 -62.56 -0.23 -7.49 16 19 C 0.26 6.46 6.26 -5.19 -0.03 6.42 16 20 C -0.53 -14.56 9.24 -34.44 -0.32 -14.88 16 21 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -25.08 13.29 55.43 0.74 -24.35 16 24 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 N -0.30 -6.78 12.42 31.44 0.39 -6.39 16 29 O -0.29 -3.73 9.47 -39.02 -0.37 -4.10 16 30 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 31 H 0.06 0.29 8.09 -51.93 -0.42 -0.13 16 32 H 0.06 0.29 8.09 -51.93 -0.42 -0.13 16 33 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.49 8.14 -51.94 -0.42 0.07 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.60 7.91 -51.93 -0.41 0.19 16 40 H 0.41 4.69 8.62 -40.82 -0.35 4.33 16 41 H 0.16 3.09 5.92 -52.48 -0.31 2.78 16 42 H 0.17 2.72 8.06 -52.49 -0.42 2.29 16 43 H 0.06 1.41 8.07 -51.93 -0.42 1.00 16 44 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 381.48 15.07 5.75 5.75 Total: -1.00 -33.69 381.48 -10.11 -43.80 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.10 Total: 3.66 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -5.01 Total: -8.53 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.84 Total: -47.53 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.56 Total: -13.30 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.69 -10.11 -43.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373504260.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.157 kcal (2) G-P(sol) polarization free energy of solvation -33.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds