Wall clock time and date at job start Sat Apr 11 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38289 * 120.01324 * 2 1 4 4 C 1.37959 * 119.96275 * 180.08198 * 3 2 1 5 5 C 1.39146 * 120.21681 * 0.04195 * 4 3 2 6 6 C 1.38366 * 119.68957 * 359.81660 * 5 4 3 7 7 C 1.38102 * 120.00614 * 180.02562 * 2 1 3 8 8 C 1.50778 * 121.40884 * 180.30414 * 6 5 4 9 9 C 1.53068 * 109.69088 * 342.21845 * 8 6 5 10 10 C 1.53408 * 108.29094 * 48.18582 * 9 8 6 11 11 H 1.08998 * 109.68665 * 55.07243 * 10 9 8 12 12 C 1.50699 * 109.67811 * 175.58588 * 10 9 8 13 13 O 1.21302 * 119.99902 * 114.48358 * 12 10 9 14 14 N 1.34777 * 120.00251 * 294.48270 * 12 10 9 15 15 C 1.40154 * 120.00077 * 180.02562 * 14 12 10 16 16 C 1.40413 * 125.97578 * 359.97438 * 15 14 12 17 17 C 1.35239 * 107.86890 * 179.74156 * 16 15 14 18 18 N 1.34973 * 107.85936 * 0.39108 * 17 16 15 19 19 C 1.46499 * 125.97185 * 179.87323 * 18 17 16 20 20 C 1.50701 * 109.46992 * 124.71561 * 19 18 17 21 21 H 1.07998 * 120.00129 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99861 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99913 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99734 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47432 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46890 * 120.00210 * 24 22 20 27 27 H 1.48501 * 109.47062 * 240.00257 * 24 22 20 28 28 N 1.31221 * 125.97212 * 179.97438 * 15 14 12 29 29 O 1.35848 * 118.50030 * 179.75612 * 5 4 3 30 30 H 1.09009 * 109.47364 * 269.98143 * 1 2 3 31 31 H 1.09004 * 109.47218 * 29.97938 * 1 2 3 32 32 H 1.09000 * 109.47162 * 149.98003 * 1 2 3 33 33 H 1.08008 * 120.01406 * 0.10126 * 3 2 1 34 34 H 1.08001 * 119.89306 * 179.97438 * 4 3 2 35 35 H 1.08005 * 119.84625 * 359.97438 * 7 2 1 36 36 H 1.09005 * 109.43603 * 102.26178 * 8 6 5 37 37 H 1.08989 * 109.44122 * 222.17844 * 8 6 5 38 38 H 1.08993 * 109.66805 * 288.50215 * 9 8 6 39 39 H 1.09004 * 109.72357 * 167.89470 * 9 8 6 40 40 H 0.97001 * 119.99775 * 359.97438 * 14 12 10 41 41 H 1.08004 * 126.06353 * 0.02562 * 16 15 14 42 42 H 1.08002 * 126.06745 * 180.26809 * 17 16 15 43 43 H 1.09002 * 109.47391 * 4.71551 * 19 18 17 44 44 H 1.09001 * 109.46813 * 244.71607 * 19 18 17 45 45 H 0.97002 * 119.99768 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1987 1.1975 0.0000 4 6 3.5783 1.1962 -0.0017 5 6 4.2775 -0.0068 -0.0043 6 6 3.5827 -1.2033 -0.0013 7 6 2.1976 -1.1959 -0.0005 8 6 4.3009 -2.5290 0.0028 9 6 5.7535 -2.3300 -0.4370 10 6 6.3397 -1.1545 0.3554 11 1 6.2216 -1.3365 1.4236 12 6 7.8020 -0.9993 0.0257 13 8 8.1919 -0.0048 -0.5490 14 7 8.6766 -1.9655 0.3695 15 6 10.0366 -1.8208 0.0633 16 6 10.6222 -0.7277 -0.5953 17 6 11.9498 -0.9653 -0.6940 18 7 12.1987 -2.1656 -0.1290 19 6 13.5094 -2.8111 -0.0220 20 6 13.7901 -3.1418 1.4213 21 1 13.0645 -2.8961 2.1826 22 6 14.9728 -3.7590 1.7697 23 7 15.8561 -4.0586 0.8426 24 14 15.3203 -4.1695 3.5585 25 1 14.1759 -3.7329 4.3981 26 1 15.5082 -5.6356 3.7024 27 1 16.5530 -3.4671 3.9971 28 7 10.9854 -2.6834 0.3421 29 8 5.6354 0.0327 -0.0110 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6591 2.1331 0.0017 34 1 4.1174 2.1321 -0.0021 35 1 1.6552 -2.1299 -0.0005 36 1 4.2812 -2.9491 1.0085 37 1 3.8045 -3.2127 -0.6856 38 1 5.7866 -2.1073 -1.5034 39 1 6.3271 -3.2339 -0.2318 40 1 8.3649 -2.7606 0.8294 41 1 10.1047 0.1496 -0.9547 42 1 12.6809 -0.3116 -1.1465 43 1 14.2788 -2.1357 -0.3962 44 1 13.5122 -3.7276 -0.6120 45 1 16.6883 -4.4925 1.0878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373504260.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:36 Heat of formation + Delta-G solvation = 10.638465 kcal Electronic energy + Delta-G solvation = -28021.114362 eV Core-core repulsion = 24004.663336 eV Total energy + Delta-G solvation = -4016.451026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.42149 -41.85015 -40.47348 -38.63612 -36.36807 -35.55308 -35.13263 -33.33839 -32.76185 -31.55476 -30.97723 -29.03662 -28.23685 -26.71932 -25.05301 -24.46649 -23.44860 -23.03485 -21.99513 -21.11795 -20.54511 -18.99444 -18.73493 -18.65037 -17.95161 -17.49095 -16.96666 -16.69124 -16.39205 -16.00485 -15.74301 -15.64604 -15.33444 -15.15214 -14.83572 -14.63986 -14.52035 -14.24715 -14.19593 -13.88063 -13.84660 -13.70314 -13.44235 -13.14362 -12.94728 -12.74599 -12.58293 -12.32160 -12.29822 -12.10608 -12.06450 -11.90277 -11.65743 -11.42959 -11.41211 -10.86710 -10.72778 -9.81200 -9.72692 -9.18810 -8.98220 -8.33879 -6.47728 0.36595 0.42286 0.82514 1.02946 1.33839 1.37369 1.39689 1.52004 1.97113 2.12741 2.34372 2.54385 2.76837 2.98342 3.28582 3.42313 3.70548 3.77620 3.83776 3.94464 4.05162 4.19346 4.22875 4.26454 4.40949 4.53624 4.58731 4.68313 4.74603 4.86070 4.86738 4.90355 4.91091 4.97269 5.00915 5.02993 5.08942 5.15297 5.19955 5.36510 5.46616 5.56227 5.69967 5.78168 5.84166 5.86957 6.13908 6.24851 6.42214 6.63716 6.87261 7.02382 7.22385 8.74129 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.001868 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.386310 B =14986.097565 C =15415.139589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.123 4.123 3 C -0.093 4.093 4 C -0.160 4.160 5 C 0.099 3.901 6 C -0.163 4.163 7 C -0.089 4.089 8 C -0.071 4.071 9 C -0.147 4.147 10 C 0.088 3.912 11 H 0.129 0.871 12 C 0.528 3.472 13 O -0.533 6.533 14 N -0.613 5.613 15 C 0.266 3.734 16 C -0.297 4.297 17 C 0.059 3.941 18 N -0.341 5.341 19 C 0.271 3.729 20 C -0.548 4.548 21 H 0.053 0.947 22 C 0.019 3.981 23 N -0.920 5.920 24 Si 0.972 3.028 25 H -0.274 1.274 26 H -0.273 1.273 27 H -0.271 1.271 28 N -0.338 5.338 29 O -0.318 6.318 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.147 0.853 34 H 0.126 0.874 35 H 0.149 0.851 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.117 0.883 40 H 0.429 0.571 41 H 0.163 0.837 42 H 0.202 0.798 43 H 0.059 0.941 44 H 0.024 0.976 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.888 4.560 -1.205 31.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.123 4.123 3 C -0.111 4.111 4 C -0.179 4.179 5 C 0.055 3.945 6 C -0.163 4.163 7 C -0.107 4.107 8 C -0.108 4.108 9 C -0.185 4.185 10 C 0.029 3.971 11 H 0.147 0.853 12 C 0.314 3.686 13 O -0.407 6.407 14 N -0.264 5.264 15 C 0.012 3.988 16 C -0.328 4.328 17 C -0.090 4.090 18 N -0.123 5.123 19 C 0.153 3.847 20 C -0.586 4.586 21 H 0.071 0.929 22 C -0.182 4.182 23 N -0.559 5.559 24 Si 0.797 3.203 25 H -0.199 1.199 26 H -0.198 1.198 27 H -0.196 1.196 28 N -0.169 5.169 29 O -0.232 6.232 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.165 0.835 34 H 0.144 0.856 35 H 0.167 0.833 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.135 0.865 40 H 0.267 0.733 41 H 0.181 0.819 42 H 0.218 0.782 43 H 0.077 0.923 44 H 0.042 0.958 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -29.947 4.177 -1.177 30.260 hybrid contribution 0.629 0.239 0.495 0.835 sum -29.318 4.415 -0.682 29.657 Atomic orbital electron populations 1.20770 0.89062 1.03606 1.02992 1.20188 0.97693 0.92751 1.01649 1.21077 0.92217 0.99206 0.98624 1.20782 0.94814 0.96306 1.05973 1.18993 0.81122 0.94805 0.99584 1.20111 0.95252 0.94342 1.06640 1.21093 0.92079 0.99003 0.98505 1.20582 0.92288 0.93335 1.04601 1.22287 0.98249 0.97544 1.00387 1.22167 0.86423 0.86246 1.02293 0.85345 1.20602 0.87809 0.81939 0.78235 1.90668 1.79347 1.30237 1.40419 1.42226 1.02106 1.23459 1.58632 1.19327 0.85433 0.94771 0.99294 1.21700 0.93120 1.03259 1.14701 1.23153 0.98031 0.89127 0.98667 1.48868 1.06563 1.14804 1.42091 1.19379 0.74171 0.93295 0.97890 1.21430 1.03579 1.40912 0.92644 0.92872 1.25735 0.95196 0.94618 1.02627 1.69999 1.09390 1.41654 1.34831 0.85291 0.78110 0.78245 0.78702 1.19879 1.19803 1.19638 1.77255 0.90235 1.23276 1.26119 1.85997 1.16736 1.35952 1.84553 0.90512 0.90908 0.90623 0.83545 0.85647 0.83290 0.87724 0.87379 0.90981 0.86471 0.73267 0.81940 0.78158 0.92319 0.95813 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 71.24 0.71 -0.10 16 2 C -0.12 -1.63 5.88 -19.89 -0.12 -1.75 16 3 C -0.09 -1.44 9.70 22.22 0.22 -1.23 16 4 C -0.16 -3.29 9.94 22.42 0.22 -3.06 16 5 C 0.10 2.20 6.47 22.52 0.15 2.35 16 6 C -0.16 -2.68 5.75 -19.74 -0.11 -2.79 16 7 C -0.09 -1.18 9.32 22.30 0.21 -0.97 16 8 C -0.07 -0.78 5.86 29.90 0.18 -0.60 16 9 C -0.15 -2.15 5.46 30.75 0.17 -1.98 16 10 C 0.09 1.82 3.21 29.98 0.10 1.92 16 11 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 12 C 0.53 15.18 7.16 87.66 0.63 15.81 16 13 O -0.53 -19.92 13.65 15.80 0.22 -19.71 16 14 N -0.61 -17.74 5.40 -307.50 -1.66 -19.40 16 15 C 0.27 10.47 8.11 133.33 1.08 11.55 16 16 C -0.30 -11.77 9.61 22.11 0.21 -11.55 16 17 C 0.06 2.33 11.44 83.52 0.96 3.29 16 18 N -0.34 -15.91 3.67 -351.83 -1.29 -17.20 16 19 C 0.27 13.96 6.26 85.63 0.54 14.49 16 20 C -0.55 -30.63 9.24 25.60 0.24 -30.40 16 21 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 22 C 0.02 1.02 5.46 84.66 0.46 1.48 16 23 N -0.92 -51.73 13.29 21.45 0.28 -51.44 16 24 Si 0.97 43.25 29.54 68.60 2.03 45.27 16 25 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 28 N -0.34 -15.41 12.42 -54.45 -0.68 -16.08 16 29 O -0.32 -8.40 9.47 -72.94 -0.69 -9.09 16 30 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.07 0.45 8.09 -2.38 -0.02 0.43 16 32 H 0.07 0.42 8.09 -2.39 -0.02 0.40 16 33 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 35 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 36 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.11 0.80 8.14 -2.39 -0.02 0.79 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.12 1.17 7.91 -2.39 -0.02 1.15 16 40 H 0.43 9.18 8.62 -92.71 -0.80 8.38 16 41 H 0.16 6.38 5.92 -2.91 -0.02 6.37 16 42 H 0.20 6.30 8.06 -2.91 -0.02 6.28 16 43 H 0.06 2.95 8.07 -2.39 -0.02 2.93 16 44 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -74.61 381.48 4.26 -70.35 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.22 Total: 20.86 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 5.82 Total: -3.55 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -3.34 Total: -104.13 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.47 Total: -28.80 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -74.61 4.26 -70.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373504260.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.990 kcal (2) G-P(sol) polarization free energy of solvation -74.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds