Wall clock time and date at job start Sat Apr 11 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38283 * 119.92324 * 2 1 4 4 C 1.38106 * 120.07369 * 179.97438 * 3 2 1 5 5 C 1.38912 * 119.92405 * 0.02562 * 4 3 2 6 6 N 1.39793 * 120.07374 * 179.97438 * 5 4 3 7 7 N 1.39945 * 125.89838 * 180.14408 * 6 5 4 8 8 H 0.97004 * 125.42896 * 0.03649 * 7 6 5 9 9 C 1.37615 * 109.12914 * 180.28372 * 7 6 5 10 10 C 1.48316 * 125.76566 * 179.74246 * 9 7 6 11 11 O 1.21486 * 119.99840 * 354.75453 * 10 9 7 12 12 N 1.34769 * 119.99986 * 174.76039 * 10 9 7 13 13 C 1.46501 * 120.00014 * 185.76273 * 12 10 9 14 14 C 1.53005 * 109.47304 * 183.69236 * 13 12 10 15 15 C 1.50702 * 115.55025 * 306.41985 * 14 13 12 16 16 H 1.07995 * 119.99613 * 145.10766 * 15 14 13 17 17 C 1.37876 * 120.00011 * 325.11313 * 15 14 13 18 18 N 1.31514 * 120.00122 * 349.43603 * 17 15 14 19 19 Si 1.86802 * 119.99962 * 169.43308 * 17 15 14 20 20 H 1.48503 * 109.47112 * 59.99820 * 19 17 15 21 21 H 1.48502 * 109.46908 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47055 * 300.00035 * 19 17 15 23 23 C 1.53000 * 117.49703 * 160.75047 * 14 13 12 24 24 C 1.52996 * 117.49845 * 92.08852 * 14 13 12 25 25 C 1.35554 * 108.46531 * 359.76676 * 9 7 6 26 26 C 1.34884 * 125.89697 * 0.02562 * 6 5 4 27 27 O 1.21703 * 126.48898 * 359.97438 * 26 6 5 28 28 C 1.38911 * 119.85131 * 0.25278 * 5 4 3 29 29 C 1.38106 * 119.92469 * 359.45254 * 28 5 4 30 30 H 1.08996 * 109.46939 * 90.00181 * 1 2 3 31 31 H 1.08998 * 109.46807 * 209.99719 * 1 2 3 32 32 H 1.09001 * 109.46850 * 329.99945 * 1 2 3 33 33 H 1.07998 * 119.96825 * 359.97438 * 3 2 1 34 34 H 1.08002 * 120.03986 * 180.02562 * 4 3 2 35 35 H 0.97000 * 120.00794 * 5.75791 * 12 10 9 36 36 H 1.08999 * 109.47210 * 303.68977 * 13 12 10 37 37 H 1.09000 * 109.47299 * 63.69676 * 13 12 10 38 38 H 0.96993 * 119.99998 * 185.03492 * 18 17 15 39 39 H 1.08994 * 117.50067 * 359.97438 * 23 14 13 40 40 H 1.09004 * 117.49548 * 145.02906 * 23 14 13 41 41 H 1.08994 * 117.50459 * 214.97972 * 24 14 13 42 42 H 1.09000 * 117.50005 * 359.97438 * 24 14 13 43 43 H 1.08003 * 126.41003 * 179.97438 * 25 9 7 44 44 H 1.08000 * 120.03790 * 179.72214 * 28 5 4 45 45 H 1.07997 * 119.96415 * 180.31316 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2021 0.0005 5 6 4.2741 0.0000 0.0005 6 7 5.6720 0.0000 0.0005 7 7 6.4926 -1.1336 -0.0023 8 1 6.1820 -2.0526 -0.0051 9 6 7.8102 -0.7366 0.0051 10 6 8.9874 -1.6387 0.0104 11 8 8.8317 -2.8399 0.1044 12 7 10.2298 -1.1260 -0.0891 13 6 11.3837 -2.0203 -0.2111 14 6 12.6714 -1.1939 -0.2145 15 6 12.7305 -0.0867 -1.2351 16 1 13.2369 0.8377 -1.0001 17 6 12.1379 -0.2539 -2.4687 18 7 11.7050 -1.4406 -2.8349 19 14 11.9497 1.2051 -3.6200 20 1 13.2896 1.7607 -3.9380 21 1 11.2869 0.7641 -4.8736 22 1 11.1235 2.2501 -2.9638 23 6 13.9771 -1.9191 0.1175 24 6 13.3592 -0.9522 1.1306 25 6 7.8503 0.6184 0.0074 26 6 6.4629 1.0927 0.0010 27 8 6.0946 2.2527 0.0011 28 6 3.5780 -1.2021 -0.0053 29 6 2.1970 -1.1985 0.0003 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6552 2.1328 -0.0004 34 1 4.1162 2.1385 0.0010 35 1 10.3601 -0.1648 -0.0799 36 1 11.3981 -2.7119 0.6313 37 1 11.3107 -2.5828 -1.1419 38 1 11.3550 -1.5743 -3.7295 39 1 13.9187 -2.9848 0.3387 40 1 14.8789 -1.5950 -0.4020 41 1 13.8547 0.0074 1.2773 42 1 12.8941 -1.3815 2.0181 43 1 8.7381 1.2334 0.0133 44 1 4.1162 -2.1384 -0.0099 45 1 1.6551 -2.1328 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435961838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:02 Heat of formation + Delta-G solvation = 61.999054 kcal Electronic energy + Delta-G solvation = -28786.688401 eV Core-core repulsion = 24772.464537 eV Total energy + Delta-G solvation = -4014.223864 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.87208 -39.54025 -38.87749 -37.25720 -36.72936 -34.39647 -33.47926 -32.29318 -31.35690 -31.16926 -29.81862 -27.41492 -26.14793 -25.47857 -23.65875 -23.03503 -21.79224 -21.29804 -20.59904 -19.89116 -19.52638 -18.98018 -17.21783 -16.52283 -16.20478 -16.11184 -15.73765 -15.52910 -15.00719 -14.94860 -14.51875 -14.48382 -14.14453 -14.03828 -13.98601 -13.70196 -13.44641 -13.18376 -12.82730 -12.67686 -12.55258 -12.38236 -12.00117 -11.89994 -11.63124 -11.43177 -11.07016 -10.91205 -10.58458 -10.49775 -10.36194 -10.23586 -9.73546 -9.44087 -9.28233 -9.24449 -8.94900 -8.61368 -8.42632 -8.11746 -7.82740 -6.18327 -4.28175 0.66380 1.07876 1.24991 1.36265 2.86645 3.19900 3.23644 3.28286 3.30739 3.50186 3.57701 3.86210 4.23682 4.40537 4.56301 4.63826 4.73331 4.85148 4.93794 5.04776 5.09964 5.21854 5.29484 5.37945 5.42960 5.50401 5.58477 5.70519 5.88558 5.91193 6.00506 6.07535 6.16449 6.18409 6.31757 6.40714 6.47974 6.59063 6.64959 6.75489 6.88698 6.93252 7.13481 7.24267 7.33298 7.40361 7.78856 8.00627 8.10488 8.20194 8.61187 8.71116 9.33846 10.78869 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016823 B = 0.002680 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.982534 B =10444.113407 C =11165.829189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.110 4.110 3 C -0.087 4.087 4 C -0.137 4.137 5 C 0.164 3.836 6 N -0.348 5.348 7 N -0.483 5.483 8 H 0.448 0.552 9 C 0.165 3.835 10 C 0.565 3.435 11 O -0.548 6.548 12 N -0.657 5.657 13 C 0.160 3.840 14 C 0.034 3.966 15 C -0.501 4.501 16 H 0.064 0.936 17 C 0.076 3.924 18 N -0.870 5.870 19 Si 0.889 3.111 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.270 1.270 23 C -0.193 4.193 24 C -0.211 4.211 25 C -0.289 4.289 26 C 0.533 3.467 27 O -0.521 6.521 28 C -0.154 4.154 29 C -0.089 4.089 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.131 0.869 34 H 0.159 0.841 35 H 0.408 0.592 36 H 0.036 0.964 37 H 0.116 0.884 38 H 0.265 0.735 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.179 0.821 44 H 0.123 0.877 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.353 0.320 5.492 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.111 4.111 3 C -0.106 4.106 4 C -0.158 4.158 5 C 0.071 3.929 6 N -0.160 5.160 7 N -0.209 5.209 8 H 0.296 0.704 9 C 0.048 3.952 10 C 0.346 3.654 11 O -0.428 6.428 12 N -0.303 5.303 13 C 0.038 3.962 14 C 0.034 3.966 15 C -0.538 4.538 16 H 0.082 0.918 17 C -0.129 4.129 18 N -0.506 5.506 19 Si 0.716 3.284 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.195 1.195 23 C -0.232 4.232 24 C -0.248 4.248 25 C -0.322 4.322 26 C 0.330 3.670 27 O -0.398 6.398 28 C -0.174 4.174 29 C -0.108 4.108 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.149 0.851 34 H 0.176 0.824 35 H 0.245 0.755 36 H 0.054 0.946 37 H 0.133 0.867 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.197 0.803 44 H 0.141 0.859 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.933 0.008 5.384 18.724 hybrid contribution 0.038 0.547 -0.755 0.933 sum -17.895 0.555 4.629 18.492 Atomic orbital electron populations 1.20756 0.90878 1.02792 1.02339 1.19964 0.96394 0.93054 1.01704 1.20944 0.92931 0.97930 0.98798 1.21464 0.94477 0.97782 1.02058 1.17783 0.78125 0.95587 1.01430 1.45253 1.01757 1.00420 1.68565 1.43590 0.99656 1.01447 1.76212 0.70436 1.20825 0.84013 0.94606 0.95725 1.17164 0.82271 0.86399 0.79542 1.90762 1.85815 1.14481 1.51768 1.45624 1.04443 1.12171 1.68104 1.21234 0.82097 0.90840 1.01988 1.19165 0.88606 0.96586 0.92285 1.20471 1.35884 0.99589 0.97858 0.91768 1.24970 0.94336 0.95736 0.97823 1.69802 1.40683 1.21008 1.19113 0.86683 0.78681 0.82877 0.80144 1.20162 1.21195 1.19529 1.22932 1.00352 0.95504 1.04389 1.22987 1.07693 1.00206 0.93902 1.23292 0.97413 0.93084 1.18423 1.18427 0.86714 0.83210 0.78611 1.90762 1.79556 1.15790 1.53683 1.20694 0.94949 0.95870 1.05934 1.20790 0.92770 0.97975 0.99244 0.91189 0.91572 0.91481 0.85067 0.82392 0.75521 0.94575 0.86659 0.92420 0.91414 0.90049 0.90414 0.91221 0.80332 0.85887 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.01 0.36 -0.32 16 2 C -0.11 -0.99 5.88 -104.58 -0.62 -1.61 16 3 C -0.09 -0.88 9.69 -39.61 -0.38 -1.27 16 4 C -0.14 -1.76 9.38 -39.38 -0.37 -2.13 16 5 C 0.16 2.18 6.68 -83.73 -0.56 1.62 16 6 N -0.35 -5.17 3.77 -11.03 -0.04 -5.21 16 7 N -0.48 -6.78 6.92 33.41 0.23 -6.55 16 8 H 0.45 5.28 7.85 -182.71 -1.43 3.84 16 9 C 0.17 2.64 7.08 -82.08 -0.58 2.06 16 10 C 0.57 10.39 7.83 -12.12 -0.09 10.30 16 11 O -0.55 -11.25 17.09 5.38 0.09 -11.15 16 12 N -0.66 -12.60 5.26 -61.10 -0.32 -12.92 16 13 C 0.16 3.42 4.75 -4.04 -0.02 3.40 16 14 C 0.03 0.75 2.00 -155.66 -0.31 0.44 16 15 C -0.50 -11.91 8.27 -34.44 -0.28 -12.20 16 16 H 0.06 1.54 7.84 -52.49 -0.41 1.13 16 17 C 0.08 1.84 5.13 -17.82 -0.09 1.75 16 18 N -0.87 -21.88 10.75 55.43 0.60 -21.29 16 19 Si 0.89 19.39 29.55 -169.99 -5.02 14.36 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 21 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 C -0.19 -3.96 9.96 -26.69 -0.27 -4.22 16 24 C -0.21 -4.07 9.92 -26.69 -0.26 -4.33 16 25 C -0.29 -4.62 10.53 -37.16 -0.39 -5.01 16 26 C 0.53 9.03 8.04 -12.83 -0.10 8.93 16 27 O -0.52 -9.75 15.22 5.19 0.08 -9.67 16 28 C -0.15 -1.66 9.66 -39.38 -0.38 -2.04 16 29 C -0.09 -0.82 9.69 -39.61 -0.38 -1.20 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 32 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.16 2.28 5.46 -52.49 -0.29 1.99 16 35 H 0.41 7.52 6.80 -40.82 -0.28 7.24 16 36 H 0.04 0.75 8.06 -51.93 -0.42 0.33 16 37 H 0.12 2.81 6.04 -51.93 -0.31 2.50 16 38 H 0.27 6.58 8.32 -40.82 -0.34 6.24 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 41 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.18 2.62 7.40 -52.48 -0.39 2.23 16 44 H 0.12 1.12 6.93 -52.49 -0.36 0.76 16 45 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 382.06 15.07 5.76 5.76 Total: -1.00 -28.24 382.06 -10.20 -38.43 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -6.83 Total: 14.08 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -4.74 Total: -5.84 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.46 Total: -45.97 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: 0.17 Total: -20.83 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.24 -10.20 -38.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435961838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.434 kcal (2) G-P(sol) polarization free energy of solvation -28.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds