Wall clock time and date at job start Sat Apr 11 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38283 * 119.92324 * 2 1 4 4 C 1.38106 * 120.07369 * 179.97438 * 3 2 1 5 5 C 1.38912 * 119.92405 * 0.02562 * 4 3 2 6 6 N 1.39793 * 120.07374 * 179.97438 * 5 4 3 7 7 N 1.39945 * 125.89838 * 180.14408 * 6 5 4 8 8 H 0.97004 * 125.42896 * 0.03649 * 7 6 5 9 9 C 1.37615 * 109.12914 * 180.28372 * 7 6 5 10 10 C 1.48316 * 125.76566 * 179.74246 * 9 7 6 11 11 O 1.21486 * 119.99840 * 354.75453 * 10 9 7 12 12 N 1.34769 * 119.99986 * 174.76039 * 10 9 7 13 13 C 1.46501 * 120.00014 * 185.76273 * 12 10 9 14 14 C 1.53005 * 109.47304 * 183.69236 * 13 12 10 15 15 C 1.50702 * 115.55025 * 306.41985 * 14 13 12 16 16 H 1.07995 * 119.99613 * 145.10766 * 15 14 13 17 17 C 1.37876 * 120.00011 * 325.11313 * 15 14 13 18 18 N 1.31514 * 120.00122 * 349.43603 * 17 15 14 19 19 Si 1.86802 * 119.99962 * 169.43308 * 17 15 14 20 20 H 1.48503 * 109.47112 * 59.99820 * 19 17 15 21 21 H 1.48502 * 109.46908 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47055 * 300.00035 * 19 17 15 23 23 C 1.53000 * 117.49703 * 160.75047 * 14 13 12 24 24 C 1.52996 * 117.49845 * 92.08852 * 14 13 12 25 25 C 1.35554 * 108.46531 * 359.76676 * 9 7 6 26 26 C 1.34884 * 125.89697 * 0.02562 * 6 5 4 27 27 O 1.21703 * 126.48898 * 359.97438 * 26 6 5 28 28 C 1.38911 * 119.85131 * 0.25278 * 5 4 3 29 29 C 1.38106 * 119.92469 * 359.45254 * 28 5 4 30 30 H 1.08996 * 109.46939 * 90.00181 * 1 2 3 31 31 H 1.08998 * 109.46807 * 209.99719 * 1 2 3 32 32 H 1.09001 * 109.46850 * 329.99945 * 1 2 3 33 33 H 1.07998 * 119.96825 * 359.97438 * 3 2 1 34 34 H 1.08002 * 120.03986 * 180.02562 * 4 3 2 35 35 H 0.97000 * 120.00794 * 5.75791 * 12 10 9 36 36 H 1.08999 * 109.47210 * 303.68977 * 13 12 10 37 37 H 1.09000 * 109.47299 * 63.69676 * 13 12 10 38 38 H 0.96993 * 119.99998 * 185.03492 * 18 17 15 39 39 H 1.08994 * 117.50067 * 359.97438 * 23 14 13 40 40 H 1.09004 * 117.49548 * 145.02906 * 23 14 13 41 41 H 1.08994 * 117.50459 * 214.97972 * 24 14 13 42 42 H 1.09000 * 117.50005 * 359.97438 * 24 14 13 43 43 H 1.08003 * 126.41003 * 179.97438 * 25 9 7 44 44 H 1.08000 * 120.03790 * 179.72214 * 28 5 4 45 45 H 1.07997 * 119.96415 * 180.31316 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2021 0.0005 5 6 4.2741 0.0000 0.0005 6 7 5.6720 0.0000 0.0005 7 7 6.4926 -1.1336 -0.0023 8 1 6.1820 -2.0526 -0.0051 9 6 7.8102 -0.7366 0.0051 10 6 8.9874 -1.6387 0.0104 11 8 8.8317 -2.8399 0.1044 12 7 10.2298 -1.1260 -0.0891 13 6 11.3837 -2.0203 -0.2111 14 6 12.6714 -1.1939 -0.2145 15 6 12.7305 -0.0867 -1.2351 16 1 13.2369 0.8377 -1.0001 17 6 12.1379 -0.2539 -2.4687 18 7 11.7050 -1.4406 -2.8349 19 14 11.9497 1.2051 -3.6200 20 1 13.2896 1.7607 -3.9380 21 1 11.2869 0.7641 -4.8736 22 1 11.1235 2.2501 -2.9638 23 6 13.9771 -1.9191 0.1175 24 6 13.3592 -0.9522 1.1306 25 6 7.8503 0.6184 0.0074 26 6 6.4629 1.0927 0.0010 27 8 6.0946 2.2527 0.0011 28 6 3.5780 -1.2021 -0.0053 29 6 2.1970 -1.1985 0.0003 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6552 2.1328 -0.0004 34 1 4.1162 2.1385 0.0010 35 1 10.3601 -0.1648 -0.0799 36 1 11.3981 -2.7119 0.6313 37 1 11.3107 -2.5828 -1.1419 38 1 11.3550 -1.5743 -3.7295 39 1 13.9187 -2.9848 0.3387 40 1 14.8789 -1.5950 -0.4020 41 1 13.8547 0.0074 1.2773 42 1 12.8941 -1.3815 2.0181 43 1 8.7381 1.2334 0.0133 44 1 4.1162 -2.1384 -0.0099 45 1 1.6551 -2.1328 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435961838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:01 Heat of formation + Delta-G solvation = 46.910832 kcal Electronic energy + Delta-G solvation = -28787.342675 eV Core-core repulsion = 24772.464537 eV Total energy + Delta-G solvation = -4014.878138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.07268 -40.77337 -40.01722 -38.66378 -38.27430 -35.45688 -34.95006 -34.12467 -32.20272 -32.12245 -31.03895 -28.62320 -27.61749 -26.99407 -24.81477 -24.04680 -22.92985 -22.74956 -21.71194 -21.24990 -21.13884 -20.26458 -18.67537 -17.81565 -17.58746 -17.43676 -16.94763 -16.71351 -16.52349 -16.07992 -15.97503 -15.85152 -15.42108 -15.04008 -14.97272 -14.76057 -14.69427 -14.47502 -14.19191 -13.99026 -13.65356 -13.42972 -13.19277 -13.07149 -12.83558 -12.77396 -12.67301 -12.29564 -12.19842 -12.00812 -11.70309 -11.51726 -11.27691 -11.04704 -10.87853 -10.62245 -10.16376 -10.10342 -9.83835 -9.62026 -8.90777 -8.02525 -6.16181 -0.46941 0.08654 0.25725 0.30453 1.45029 1.51634 1.54301 1.59134 1.89312 2.15379 2.43296 2.62241 2.66195 3.03532 3.28151 3.62380 3.70553 3.79585 3.91872 4.00292 4.10504 4.15524 4.27013 4.30808 4.35999 4.55774 4.72181 4.75790 4.81043 4.84336 4.88059 4.91581 5.02584 5.03072 5.08977 5.11746 5.22055 5.28721 5.31671 5.52411 5.56388 5.61087 5.64194 5.73252 5.85371 5.94299 6.21128 6.39847 6.56777 6.78402 6.86179 7.10433 7.46996 8.91835 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016823 B = 0.002680 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.982534 B =10444.113407 C =11165.829189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.092 4.092 4 C -0.154 4.154 5 C 0.126 3.874 6 N -0.341 5.341 7 N -0.468 5.468 8 H 0.458 0.542 9 C 0.165 3.835 10 C 0.572 3.428 11 O -0.570 6.570 12 N -0.657 5.657 13 C 0.172 3.828 14 C 0.007 3.993 15 C -0.505 4.505 16 H 0.059 0.941 17 C 0.045 3.955 18 N -0.891 5.891 19 Si 0.933 3.067 20 H -0.277 1.277 21 H -0.295 1.295 22 H -0.265 1.265 23 C -0.195 4.195 24 C -0.186 4.186 25 C -0.289 4.289 26 C 0.519 3.481 27 O -0.551 6.551 28 C -0.153 4.153 29 C -0.089 4.089 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.152 0.848 34 H 0.136 0.864 35 H 0.412 0.588 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.260 0.740 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.188 0.812 44 H 0.138 0.862 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.393 -0.108 6.237 20.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.102 4.102 3 C -0.110 4.110 4 C -0.175 4.175 5 C 0.035 3.965 6 N -0.153 5.153 7 N -0.195 5.195 8 H 0.308 0.692 9 C 0.046 3.954 10 C 0.354 3.646 11 O -0.451 6.451 12 N -0.303 5.303 13 C 0.049 3.951 14 C 0.006 3.994 15 C -0.542 4.542 16 H 0.078 0.922 17 C -0.157 4.157 18 N -0.527 5.527 19 Si 0.760 3.240 20 H -0.203 1.203 21 H -0.221 1.221 22 H -0.189 1.189 23 C -0.234 4.234 24 C -0.223 4.223 25 C -0.322 4.322 26 C 0.316 3.684 27 O -0.430 6.430 28 C -0.174 4.174 29 C -0.107 4.107 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.169 0.831 34 H 0.153 0.847 35 H 0.249 0.751 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.205 0.795 44 H 0.156 0.844 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -20.008 -0.438 6.140 20.933 hybrid contribution 0.556 0.634 -0.960 1.278 sum -19.452 0.196 5.180 20.131 Atomic orbital electron populations 1.20841 0.88356 1.04118 1.03381 1.20395 0.98180 0.92429 0.99214 1.21216 0.91845 0.99629 0.98310 1.21436 0.95732 0.96934 1.03401 1.18102 0.77256 0.96848 1.04288 1.45254 1.02440 0.99915 1.67653 1.43555 0.99077 1.01853 1.74980 0.69170 1.20345 0.84072 0.94047 0.96901 1.17276 0.82511 0.86261 0.78535 1.90745 1.86178 1.15516 1.52681 1.45516 1.04401 1.12107 1.68323 1.20911 0.82701 0.90904 1.00549 1.19224 0.89355 0.97016 0.93779 1.20650 1.35335 0.99905 0.98316 0.92250 1.25409 0.94483 0.96989 0.98860 1.69938 1.41781 1.22090 1.18940 0.85994 0.78325 0.81115 0.78584 1.20284 1.22076 1.18944 1.22943 0.99227 0.96442 1.04795 1.22985 1.05896 1.00103 0.93302 1.23423 0.97596 0.93143 1.18025 1.18541 0.87232 0.83379 0.79234 1.90739 1.80015 1.16806 1.55488 1.20967 0.95888 0.95442 1.05054 1.21216 0.92145 0.99454 0.97872 0.90111 0.90033 0.90494 0.83063 0.84658 0.75096 0.94065 0.89756 0.93045 0.90321 0.90733 0.89866 0.89365 0.79503 0.84419 0.82187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 71.24 0.71 -0.22 16 2 C -0.10 -1.54 5.88 -19.84 -0.12 -1.66 16 3 C -0.09 -1.72 9.69 22.25 0.22 -1.51 16 4 C -0.15 -4.00 9.38 22.40 0.21 -3.79 16 5 C 0.13 3.33 6.68 38.19 0.26 3.59 16 6 N -0.34 -10.19 3.77 -306.98 -1.16 -11.35 16 7 N -0.47 -12.95 6.92 -48.23 -0.33 -13.28 16 8 H 0.46 10.39 7.85 -213.42 -1.68 8.71 16 9 C 0.16 5.24 7.08 40.30 0.29 5.52 16 10 C 0.57 20.96 7.83 86.93 0.68 21.64 16 11 O -0.57 -23.27 17.09 -3.67 -0.06 -23.34 16 12 N -0.66 -25.14 5.26 -465.53 -2.45 -27.59 16 13 C 0.17 7.34 4.75 86.38 0.41 7.75 16 14 C 0.01 0.30 2.00 -52.93 -0.11 0.19 16 15 C -0.50 -23.86 8.27 25.60 0.21 -23.65 16 16 H 0.06 2.81 7.84 -2.91 -0.02 2.79 16 17 C 0.04 2.18 5.13 84.65 0.43 2.61 16 18 N -0.89 -45.35 10.75 21.45 0.23 -45.12 16 19 Si 0.93 39.88 29.55 68.60 2.03 41.90 16 20 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 21 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 23 C -0.20 -7.80 9.96 30.62 0.30 -7.49 16 24 C -0.19 -6.82 9.92 30.62 0.30 -6.52 16 25 C -0.29 -9.29 10.53 23.84 0.25 -9.04 16 26 C 0.52 18.00 8.04 86.42 0.69 18.69 16 27 O -0.55 -21.47 15.22 -4.36 -0.07 -21.54 16 28 C -0.15 -3.05 9.66 22.40 0.22 -2.83 16 29 C -0.09 -1.36 9.69 22.25 0.22 -1.14 16 30 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 0.49 8.08 -2.39 -0.02 0.47 16 32 H 0.08 0.54 8.08 -2.39 -0.02 0.52 16 33 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 34 H 0.14 4.14 5.46 -2.91 -0.02 4.12 16 35 H 0.41 15.11 6.80 -92.71 -0.63 14.48 16 36 H 0.04 1.68 8.06 -2.39 -0.02 1.67 16 37 H 0.08 4.17 6.04 -2.39 -0.01 4.16 16 38 H 0.26 13.12 8.32 -92.71 -0.77 12.35 16 39 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 40 H 0.07 3.04 8.14 -2.38 -0.02 3.02 16 41 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 43 H 0.19 5.52 7.40 -2.91 -0.02 5.50 16 44 H 0.14 2.23 6.93 -2.91 -0.02 2.21 16 45 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -61.08 382.06 2.12 -58.97 By element: Atomic # 1 Polarization: 40.46 SS G_CDS: -1.25 Total: 39.21 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 5.18 Total: 2.13 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -3.71 Total: -97.34 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -0.13 Total: -44.87 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.90 kcal Total: -61.08 2.12 -58.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435961838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.878 kcal (2) G-P(sol) polarization free energy of solvation -61.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds