Wall clock time and date at job start Sat Apr 11 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38293 * 119.97097 * 2 1 4 4 C 1.38252 * 120.10651 * 179.72745 * 3 2 1 5 5 C 1.38157 * 120.05764 * 0.54944 * 4 3 2 6 6 C 1.38715 * 119.94525 * 359.72285 * 5 4 3 7 7 O 1.35899 * 120.05816 * 179.97438 * 6 5 4 8 8 C 1.42907 * 116.99773 * 0.02562 * 7 6 5 9 9 C 1.53000 * 109.47085 * 180.02562 * 8 7 6 10 10 N 1.46503 * 109.47076 * 65.00004 * 9 8 7 11 11 S 1.65599 * 120.00068 * 164.99916 * 10 9 8 12 12 O 1.42100 * 104.27937 * 181.07197 * 11 10 9 13 13 O 1.42104 * 104.27810 * 308.93282 * 11 10 9 14 14 C 1.81394 * 104.44891 * 64.99951 * 11 10 9 15 15 C 1.53006 * 109.47484 * 179.97438 * 14 11 10 16 16 C 1.53000 * 109.46704 * 300.00183 * 15 14 11 17 17 C 1.52994 * 109.46777 * 60.00067 * 15 14 11 18 18 C 1.50693 * 109.47381 * 180.02562 * 15 14 11 19 19 H 1.08000 * 120.00179 * 0.83202 * 18 15 14 20 20 C 1.37876 * 119.99873 * 180.83780 * 18 15 14 21 21 N 1.31513 * 119.99860 * 194.57428 * 20 18 15 22 22 Si 1.86797 * 120.00134 * 14.57771 * 20 18 15 23 23 H 1.48496 * 109.47365 * 84.45215 * 22 20 18 24 24 H 1.48503 * 109.47132 * 204.45488 * 22 20 18 25 25 H 1.48504 * 109.46890 * 324.45374 * 22 20 18 26 26 C 1.38118 * 119.97421 * 180.27630 * 2 1 3 27 27 H 1.08994 * 109.46999 * 269.72998 * 1 2 3 28 28 H 1.09003 * 109.46991 * 29.72333 * 1 2 3 29 29 H 1.08996 * 109.47128 * 149.72402 * 1 2 3 30 30 H 1.07995 * 119.94851 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.96498 * 180.25143 * 4 3 2 32 32 H 1.07999 * 120.03158 * 179.75307 * 5 4 3 33 33 H 1.09004 * 109.46884 * 299.99970 * 8 7 6 34 34 H 1.08997 * 109.47318 * 59.99972 * 8 7 6 35 35 H 1.09002 * 109.47187 * 185.00160 * 9 8 7 36 36 H 1.08999 * 109.47145 * 305.00010 * 9 8 7 37 37 H 0.97002 * 120.00102 * 345.00095 * 10 9 8 38 38 H 1.09003 * 109.47377 * 300.00000 * 14 11 10 39 39 H 1.09007 * 109.47056 * 60.00161 * 14 11 10 40 40 H 1.09004 * 109.47151 * 70.23319 * 16 15 14 41 41 H 1.09005 * 109.46820 * 190.22455 * 16 15 14 42 42 H 1.08994 * 109.47417 * 310.22938 * 16 15 14 43 43 H 1.08999 * 109.47612 * 59.99884 * 17 15 14 44 44 H 1.09001 * 109.47565 * 180.02562 * 17 15 14 45 45 H 1.09001 * 109.47393 * 300.00093 * 17 15 14 46 46 H 0.97003 * 119.99996 * 180.02562 * 21 20 18 47 47 H 1.08008 * 120.02859 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5804 1.2013 0.0057 5 6 4.2752 0.0072 -0.0001 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3717 -0.0120 8 6 5.6928 -2.2949 -0.0117 9 6 6.2796 -3.7078 -0.0198 10 7 5.9277 -4.3756 -1.2754 11 16 6.7207 -5.7567 -1.7292 12 8 6.1435 -6.0965 -2.9825 13 8 8.0975 -5.4211 -1.6236 14 6 6.2643 -6.9764 -0.4665 15 6 6.9422 -8.3120 -0.7788 16 6 6.4867 -8.8060 -2.1533 17 6 8.4607 -8.1247 -0.7816 18 6 6.5625 -9.3254 0.2699 19 1 5.8929 -9.0488 1.0707 20 6 7.0701 -10.6058 0.2069 21 7 6.5332 -11.5624 0.9323 22 14 8.5206 -10.9817 -0.9085 23 1 9.7856 -10.6552 -0.2027 24 1 8.5104 -12.4233 -1.2649 25 1 8.4187 -10.1655 -2.1449 26 6 2.1971 -1.1964 -0.0058 27 1 -0.3633 -0.0048 1.0276 28 1 -0.3633 0.8925 -0.5095 29 1 -0.3633 -0.8875 -0.5181 30 1 1.6566 2.1325 -0.0004 31 1 4.1176 2.1382 0.0098 32 1 5.3552 0.0102 0.0003 33 1 6.0278 -1.7576 -0.8989 34 1 6.0280 -1.7669 0.8810 35 1 7.3645 -3.6512 0.0700 36 1 5.8747 -4.2742 0.8189 37 1 5.2302 -4.0087 -1.8409 38 1 6.5883 -6.6242 0.5128 39 1 5.1824 -7.1102 -0.4649 40 1 6.9155 -8.1705 -2.9283 41 1 6.8214 -9.8331 -2.2995 42 1 5.3991 -8.7664 -2.2116 43 1 8.7852 -7.7727 0.1976 44 1 8.9438 -9.0760 -1.0044 45 1 8.7350 -7.3918 -1.5403 46 1 6.8905 -12.4631 0.8883 47 1 1.6571 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450989138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:19 Heat of formation + Delta-G solvation = -75.449376 kcal Electronic energy + Delta-G solvation = -27680.977349 eV Core-core repulsion = 23763.944475 eV Total energy + Delta-G solvation = -3917.032875 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.46903 -38.16939 -36.74242 -36.71714 -35.55951 -35.25585 -32.82134 -31.95061 -30.78560 -28.84365 -27.41979 -27.25830 -26.38032 -25.02086 -23.50543 -22.83319 -21.13788 -19.96715 -18.93470 -18.15261 -17.51824 -16.82938 -16.43255 -16.22158 -16.12208 -15.71503 -15.47352 -15.14414 -14.66741 -14.62112 -14.11151 -13.85021 -13.53639 -13.39247 -13.30721 -13.13967 -12.92374 -12.70453 -12.46107 -12.43301 -12.25409 -12.12971 -11.84309 -11.61917 -11.57320 -11.47937 -11.15410 -11.10185 -11.07875 -10.99162 -10.76879 -10.17504 -10.06481 -10.04246 -9.48656 -9.10373 -9.01097 -8.74928 -8.47874 -8.47411 -6.19515 -4.16829 0.68734 1.00064 1.15246 2.80543 3.05324 3.25121 3.34333 3.38677 3.44369 4.12704 4.33921 4.35732 4.47697 4.53814 4.60017 4.72738 4.76727 4.90455 4.91877 5.00943 5.09856 5.16730 5.21451 5.26760 5.33542 5.39143 5.44780 5.54067 5.60692 5.76076 5.77710 5.99042 6.00970 6.11616 6.20406 6.27730 6.31366 6.44179 6.46971 6.49149 6.69451 6.86934 7.00150 7.13005 7.13546 7.31375 7.62414 8.38667 8.83461 9.44456 10.93017 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021881 B = 0.002351 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.317364 B =11907.881048 C =12436.161068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.048 4.048 3 C -0.162 4.162 4 C -0.077 4.077 5 C -0.217 4.217 6 C 0.136 3.864 7 O -0.310 6.310 8 C 0.053 3.947 9 C 0.118 3.882 10 N -1.126 6.126 11 S 2.591 3.409 12 O -0.962 6.962 13 O -0.966 6.966 14 C -0.574 4.574 15 C 0.054 3.946 16 C -0.171 4.171 17 C -0.181 4.181 18 C -0.508 4.508 19 H 0.078 0.922 20 C 0.077 3.923 21 N -0.889 5.889 22 Si 0.874 3.126 23 H -0.281 1.281 24 H -0.301 1.301 25 H -0.246 1.246 26 C -0.154 4.154 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.417 0.583 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.037 0.963 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.266 0.734 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.925 25.244 -0.736 26.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.048 4.048 3 C -0.180 4.180 4 C -0.095 4.095 5 C -0.235 4.235 6 C 0.091 3.909 7 O -0.223 6.223 8 C -0.024 4.024 9 C -0.009 4.009 10 N -0.885 5.885 11 S 2.689 3.311 12 O -0.952 6.952 13 O -0.955 6.955 14 C -0.707 4.707 15 C 0.051 3.949 16 C -0.228 4.228 17 C -0.238 4.238 18 C -0.546 4.546 19 H 0.096 0.904 20 C -0.127 4.127 21 N -0.525 5.525 22 Si 0.706 3.294 23 H -0.208 1.208 24 H -0.229 1.229 25 H -0.172 1.172 26 C -0.172 4.172 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.250 0.750 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.287 24.737 -1.326 25.557 hybrid contribution 0.391 -0.159 -0.002 0.422 sum -5.895 24.577 -1.328 25.309 Atomic orbital electron populations 1.20823 0.90709 1.03077 1.02645 1.19728 0.96115 0.92267 0.96737 1.20943 0.94175 0.97538 1.05390 1.20922 0.94180 0.97394 0.97021 1.21270 1.00346 0.92287 1.09640 1.19003 0.91778 0.84689 0.95445 1.86112 1.19884 1.27989 1.88344 1.23063 0.78602 0.98158 1.02576 1.21377 1.00648 0.91915 0.86932 1.55724 1.55674 1.44822 1.32247 1.05638 0.74432 0.74413 0.76647 1.93573 1.78685 1.83216 1.39765 1.93540 1.32302 1.82281 1.87417 1.30370 1.11360 1.12874 1.16116 1.18235 0.90767 0.90151 0.95737 1.22683 1.01673 1.02367 0.96092 1.22817 0.98174 1.00851 1.01972 1.20647 1.29882 0.93619 1.10468 0.90388 1.24971 0.96619 0.95791 0.95285 1.69938 1.39678 1.01400 1.41492 0.87436 0.83501 0.75805 0.82670 1.20825 1.22933 1.17186 1.20351 0.90965 0.98798 1.07103 0.90819 0.91317 0.91168 0.86046 0.85844 0.85433 0.90922 0.90366 0.87993 0.90282 0.74980 0.85757 0.85320 0.94438 0.91460 0.92300 0.91783 0.93027 0.93182 0.92423 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.01 36.01 0.36 -0.33 16 2 C -0.05 -0.41 5.88 -104.64 -0.62 -1.02 16 3 C -0.16 -1.27 9.70 -39.56 -0.38 -1.65 16 4 C -0.08 -0.61 10.04 -39.61 -0.40 -1.00 16 5 C -0.22 -1.90 9.04 -39.43 -0.36 -2.26 16 6 C 0.14 1.40 6.69 -39.21 -0.26 1.14 16 7 O -0.31 -3.30 9.94 -19.42 -0.19 -3.49 16 8 C 0.05 0.45 4.93 37.16 0.18 0.63 16 9 C 0.12 1.18 6.52 -4.04 -0.03 1.15 16 10 N -1.13 -14.01 5.85 -10.61 -0.06 -14.08 16 11 S 2.59 43.45 4.50 -107.50 -0.48 42.96 16 12 O -0.96 -18.69 15.92 -57.54 -0.92 -19.61 16 13 O -0.97 -18.02 15.12 -57.54 -0.87 -18.89 16 14 C -0.57 -10.32 4.99 37.16 0.19 -10.14 16 15 C 0.05 1.22 0.52 -155.66 -0.08 1.14 16 16 C -0.17 -3.85 6.95 37.16 0.26 -3.59 16 17 C -0.18 -4.02 7.22 37.15 0.27 -3.75 16 18 C -0.51 -13.59 8.62 -34.44 -0.30 -13.88 16 19 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 20 C 0.08 2.14 5.31 -17.82 -0.09 2.05 16 21 N -0.89 -26.43 13.96 55.43 0.77 -25.65 16 22 Si 0.87 21.50 22.79 -169.99 -3.87 17.63 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.25 -5.67 4.67 56.52 0.26 -5.41 16 26 C -0.15 -1.51 9.64 -39.44 -0.38 -1.89 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 29 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 30 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 31 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 33 H 0.07 0.56 7.66 -51.93 -0.40 0.16 16 34 H 0.08 0.50 7.66 -51.93 -0.40 0.10 16 35 H 0.10 0.93 7.69 -51.93 -0.40 0.54 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.42 4.76 8.47 -34.47 -0.29 4.46 16 38 H 0.12 1.97 8.14 -51.92 -0.42 1.55 16 39 H 0.13 2.16 8.14 -51.92 -0.42 1.73 16 40 H 0.04 0.79 6.21 -51.93 -0.32 0.47 16 41 H 0.07 1.56 4.32 -51.93 -0.22 1.34 16 42 H 0.06 1.25 8.11 -51.93 -0.42 0.83 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.05 1.19 2.28 -51.93 -0.12 1.07 16 45 H 0.05 1.04 5.47 -51.93 -0.28 0.75 16 46 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 374.52 15.07 5.64 5.64 Total: -1.00 -34.16 374.52 -8.72 -42.88 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.10 Total: 6.00 kcal Atomic # 6 Polarization: -31.76 SS G_CDS: -1.64 Total: -33.40 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.71 Total: -39.73 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -1.98 Total: -41.99 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -3.87 Total: 17.63 kcal Atomic # 16 Polarization: 43.45 SS G_CDS: -0.48 Total: 42.96 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.16 -8.72 -42.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450989138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.566 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds