Wall clock time and date at job start Sat Apr 11 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38867 * 119.41049 * 2 1 4 4 C 1.38216 * 119.71203 * 180.02562 * 3 2 1 5 5 C 1.39301 * 118.33365 * 0.02562 * 4 3 2 6 6 O 1.34589 * 133.42245 * 180.33789 * 5 4 3 7 7 C 1.34864 * 110.81544 * 180.12519 * 6 5 4 8 8 C 1.47169 * 125.12809 * 179.81752 * 7 6 5 9 9 O 1.21631 * 119.99613 * 179.69739 * 8 7 6 10 10 N 1.34770 * 120.00269 * 359.69612 * 8 7 6 11 11 C 1.46498 * 120.00228 * 180.27799 * 10 8 7 12 12 C 1.52998 * 109.47333 * 179.72609 * 11 10 8 13 13 H 1.09001 * 115.51330 * 330.41728 * 12 11 10 14 14 C 1.53004 * 117.44336 * 184.99751 * 12 11 10 15 15 H 1.08989 * 119.53641 * 4.11745 * 14 12 11 16 16 C 1.54389 * 118.11862 * 160.80749 * 14 12 11 17 17 N 1.48145 * 104.61683 * 87.19626 * 16 14 12 18 18 C 1.36940 * 127.84264 * 140.39285 * 17 16 14 19 19 H 1.07997 * 120.00410 * 195.59207 * 18 17 16 20 20 C 1.38813 * 119.99741 * 15.59199 * 18 17 16 21 21 N 1.31625 * 119.99894 * 9.09658 * 20 18 17 22 22 Si 1.86791 * 120.00062 * 189.09911 * 20 18 17 23 23 H 1.48500 * 109.47450 * 89.99525 * 22 20 18 24 24 H 1.48498 * 109.47287 * 209.99906 * 22 20 18 25 25 H 1.48506 * 109.47046 * 329.99917 * 22 20 18 26 26 C 1.48148 * 104.32186 * 320.40866 * 17 16 14 27 27 C 1.53004 * 117.44182 * 115.75595 * 12 11 10 28 28 H 1.08987 * 119.54401 * 355.88567 * 27 12 11 29 29 C 1.35754 * 109.74080 * 359.55555 * 7 6 5 30 30 C 1.40659 * 118.77806 * 359.97438 * 5 4 3 31 31 N 1.31438 * 119.40876 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47185 * 89.99308 * 1 2 3 33 33 H 1.08997 * 109.47178 * 209.99873 * 1 2 3 34 34 H 1.09005 * 109.46956 * 329.99809 * 1 2 3 35 35 H 1.07994 * 120.14515 * 0.03036 * 3 2 1 36 36 H 1.07993 * 120.82988 * 180.02562 * 4 3 2 37 37 H 0.97003 * 119.99889 * 0.02562 * 10 8 7 38 38 H 1.09000 * 109.46884 * 299.72491 * 11 10 8 39 39 H 1.08998 * 109.47118 * 59.72282 * 11 10 8 40 40 H 1.09006 * 110.40275 * 205.97206 * 16 14 12 41 41 H 1.08996 * 110.41228 * 328.40652 * 16 14 12 42 42 H 0.96994 * 119.99554 * 180.02562 * 21 20 18 43 43 H 1.08998 * 110.40875 * 280.80368 * 26 17 16 44 44 H 1.09002 * 110.50501 * 158.42441 * 26 17 16 45 45 H 1.07999 * 126.93229 * 180.28812 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1889 1.2097 0.0000 4 6 3.5710 1.2170 -0.0005 5 6 4.2386 -0.0057 -0.0016 6 8 5.5399 -0.3492 0.0034 7 6 5.6815 -1.6903 -0.0033 8 6 6.9674 -2.4061 -0.0043 9 8 6.9865 -3.6222 -0.0051 10 7 8.1239 -1.7140 -0.0044 11 6 9.4039 -2.4264 -0.0115 12 6 10.5511 -1.4141 -0.0168 13 1 10.3345 -0.4617 -0.5008 14 6 11.9742 -1.9617 -0.1429 15 1 12.1275 -3.0304 -0.2917 16 6 13.0882 -0.9948 -0.5987 17 7 13.5663 -0.3595 0.6513 18 6 14.8553 -0.0548 0.9991 19 1 15.0981 0.1722 2.0266 20 6 15.8498 -0.0376 0.0308 21 7 15.5305 -0.1360 -1.2423 22 14 17.6411 0.1253 0.5346 23 1 18.2195 -1.2254 0.7500 24 1 18.3957 0.8216 -0.5382 25 1 17.7322 0.9091 1.7927 26 6 12.3336 -0.1289 1.4400 27 6 11.4766 -1.3907 1.2013 28 1 11.2593 -2.0342 2.0537 29 6 4.4590 -2.2805 -0.0033 30 6 3.4810 -1.1908 -0.0016 31 7 2.1523 -1.1450 -0.0005 32 1 -0.3634 0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5139 35 1 1.6416 2.1407 0.0005 36 1 4.1196 2.1472 -0.0001 37 1 8.1087 -0.7441 -0.0034 38 1 9.4761 -3.0526 0.8778 39 1 9.4669 -3.0516 -0.9021 40 1 13.8971 -1.5460 -1.0783 41 1 12.6849 -0.2430 -1.2770 42 1 16.2255 -0.1244 -1.9188 43 1 11.8124 0.7582 1.0800 44 1 12.5714 -0.0256 2.4987 45 1 4.2499 -3.3401 -0.0035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978983879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:08 Heat of formation + Delta-G solvation = 66.124310 kcal Electronic energy + Delta-G solvation = -27537.719151 eV Core-core repulsion = 23523.674172 eV Total energy + Delta-G solvation = -4014.044979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -43.11568 -40.07382 -39.40427 -38.73864 -35.25324 -33.71407 -33.45327 -32.89104 -31.33430 -30.85642 -28.59559 -27.31168 -27.13763 -25.30735 -24.15776 -22.88331 -22.23610 -21.23168 -21.14722 -20.14329 -19.32762 -18.70852 -18.02970 -17.01224 -16.85897 -16.43803 -16.18849 -15.96481 -15.36835 -14.94796 -14.60301 -14.53855 -14.27049 -14.02694 -13.75014 -13.55349 -13.46825 -13.18467 -12.96486 -12.83955 -12.71592 -12.69620 -12.66368 -11.90617 -11.30841 -11.15792 -11.03589 -10.86962 -10.75064 -10.66518 -10.33601 -10.15524 -9.95168 -9.77687 -9.58762 -9.35010 -9.24510 -9.13269 -8.98277 -8.67209 -6.90153 -5.82767 -3.17274 0.00168 0.61138 1.32621 1.90606 2.70412 2.78003 3.19738 3.36484 3.41888 3.43679 3.51218 3.94446 4.05944 4.12481 4.29247 4.43286 4.45492 4.68964 4.76913 4.80696 5.00839 5.11717 5.13671 5.21918 5.30086 5.33333 5.39068 5.40649 5.44002 5.49000 5.69076 5.69479 5.79209 5.83246 5.85665 5.91447 6.10250 6.18235 6.38143 6.49690 6.61160 6.65940 6.87515 7.16303 7.32066 7.38846 7.49874 7.68815 7.74088 8.17872 9.08105 9.70815 10.47520 11.31551 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.027712 B = 0.001695 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.149997 B =16510.664296 C =17149.787682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.129 3.871 3 C -0.141 4.141 4 C -0.055 4.055 5 C 0.012 3.988 6 O -0.176 6.176 7 C -0.001 4.001 8 C 0.597 3.403 9 O -0.511 6.511 10 N -0.705 5.705 11 C 0.152 3.848 12 C -0.153 4.153 13 H 0.104 0.896 14 C -0.159 4.159 15 H 0.105 0.895 16 C 0.183 3.817 17 N -0.594 5.594 18 C -0.228 4.228 19 H 0.077 0.923 20 C -0.005 4.005 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.154 3.846 27 C -0.171 4.171 28 H 0.104 0.896 29 C -0.107 4.107 30 C 0.070 3.930 31 N -0.441 5.441 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.409 0.591 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.024 0.976 42 H 0.255 0.745 43 H 0.024 0.976 44 H 0.050 0.950 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.976 1.755 1.577 29.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.017 4.017 3 C -0.161 4.161 4 C -0.081 4.081 5 C -0.039 4.039 6 O -0.076 6.076 7 C -0.053 4.053 8 C 0.381 3.619 9 O -0.388 6.388 10 N -0.356 5.356 11 C 0.030 3.970 12 C -0.172 4.172 13 H 0.122 0.878 14 C -0.180 4.180 15 H 0.123 0.877 16 C 0.058 3.942 17 N -0.318 5.318 18 C -0.356 4.356 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.562 5.562 22 Si 0.743 3.257 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.027 3.973 27 C -0.191 4.191 28 H 0.122 0.878 29 C -0.128 4.128 30 C -0.060 4.060 31 N -0.152 5.152 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.170 0.830 36 H 0.168 0.832 37 H 0.245 0.755 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.042 0.958 42 H 0.065 0.935 43 H 0.042 0.958 44 H 0.068 0.932 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -28.801 0.306 1.500 28.842 hybrid contribution 1.304 1.262 0.192 1.825 sum -27.498 1.569 1.692 27.594 Atomic orbital electron populations 1.20726 0.87877 1.03877 1.03475 1.21369 0.97325 0.87397 0.95643 1.21905 0.93080 0.99925 1.01185 1.20524 0.93499 0.94972 0.99145 1.20544 0.82348 0.96892 1.04096 1.84016 1.24916 1.22660 1.76030 1.22174 0.96145 0.80227 1.06739 1.16600 0.81200 0.86240 0.77877 1.90912 1.85910 1.11673 1.50354 1.45976 1.05511 1.11132 1.72947 1.21033 0.79462 0.93766 1.02742 1.22525 0.90909 1.00139 1.03631 0.87769 1.24251 0.92360 1.00381 1.00995 0.87741 1.21075 0.92494 0.92029 0.88640 1.45205 1.00975 1.68892 1.16689 1.19008 0.82070 1.41329 0.93217 0.90548 1.24899 0.98552 1.01656 0.95137 1.69896 1.31693 1.55709 0.98880 0.86103 0.84458 0.77704 0.77393 1.21463 1.21638 1.20540 1.21138 0.87725 0.92408 0.95996 1.24013 1.01484 1.02133 0.91442 0.87808 1.22498 0.88162 0.99995 1.02140 1.20586 0.90354 0.92107 1.02958 1.66856 1.07084 1.29683 1.11541 0.90056 0.90177 0.90263 0.83034 0.83233 0.75521 0.90728 0.90397 0.89114 0.95830 0.93529 0.95841 0.93150 0.80382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.45 10.16 36.00 0.37 -0.09 16 2 C 0.13 1.01 6.78 -82.53 -0.56 0.45 16 3 C -0.14 -0.85 9.71 -39.36 -0.38 -1.23 16 4 C -0.06 -0.40 10.19 -39.19 -0.40 -0.80 16 5 C 0.01 0.12 7.42 -38.27 -0.28 -0.16 16 6 O -0.18 -1.91 10.28 3.37 0.03 -1.87 16 7 C 0.00 -0.01 7.07 -36.85 -0.26 -0.27 16 8 C 0.60 7.53 7.80 -12.64 -0.10 7.43 16 9 O -0.51 -7.83 16.83 5.25 0.09 -7.74 16 10 N -0.71 -8.09 5.55 -61.47 -0.34 -8.43 16 11 C 0.15 1.93 5.95 -4.04 -0.02 1.91 16 12 C -0.15 -2.23 5.39 -90.62 -0.49 -2.72 16 13 H 0.10 1.52 8.04 -51.93 -0.42 1.10 16 14 C -0.16 -2.90 6.85 -89.21 -0.61 -3.51 16 15 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 16 C 0.18 4.30 5.70 -2.41 -0.01 4.28 16 17 N -0.59 -14.98 3.38 -168.86 -0.57 -15.55 16 18 C -0.23 -6.29 10.35 -15.06 -0.16 -6.45 16 19 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 20 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 21 N -0.92 -26.52 10.87 55.49 0.60 -25.91 16 22 Si 0.91 21.75 29.56 -169.99 -5.03 16.72 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.15 3.13 7.04 -2.41 -0.02 3.11 16 27 C -0.17 -2.90 6.74 -89.21 -0.60 -3.50 16 28 H 0.10 1.62 8.12 -51.94 -0.42 1.20 16 29 C -0.11 -1.20 10.81 -37.18 -0.40 -1.60 16 30 C 0.07 0.80 7.52 -83.18 -0.63 0.17 16 31 N -0.44 -4.82 10.32 -6.13 -0.06 -4.88 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.17 8.07 -51.93 -0.42 -0.25 16 35 H 0.15 0.37 8.06 -52.49 -0.42 -0.05 16 36 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.41 4.04 8.12 -40.82 -0.33 3.71 16 38 H 0.07 0.97 7.94 -51.93 -0.41 0.55 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 2.39 6.51 -51.93 -0.34 2.05 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.18 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 383.12 15.07 5.77 5.77 Total: -1.00 -32.98 383.12 -10.27 -43.25 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.11 Total: 1.88 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -4.65 Total: -3.22 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.37 Total: -54.79 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.12 Total: -9.62 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.98 -10.27 -43.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978983879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.377 kcal (2) G-P(sol) polarization free energy of solvation -32.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds