Wall clock time and date at job start Sat Apr 11 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38867 * 119.41049 * 2 1 4 4 C 1.38216 * 119.71203 * 180.02562 * 3 2 1 5 5 C 1.39301 * 118.33365 * 0.02562 * 4 3 2 6 6 O 1.34589 * 133.42245 * 180.33789 * 5 4 3 7 7 C 1.34864 * 110.81544 * 180.12519 * 6 5 4 8 8 C 1.47169 * 125.12809 * 179.81752 * 7 6 5 9 9 O 1.21631 * 119.99613 * 179.69739 * 8 7 6 10 10 N 1.34770 * 120.00269 * 359.69612 * 8 7 6 11 11 C 1.46498 * 120.00228 * 180.27799 * 10 8 7 12 12 C 1.52998 * 109.47333 * 179.72609 * 11 10 8 13 13 H 1.09001 * 115.51330 * 330.41728 * 12 11 10 14 14 C 1.53004 * 117.44336 * 184.99751 * 12 11 10 15 15 H 1.08989 * 119.53641 * 4.11745 * 14 12 11 16 16 C 1.54389 * 118.11862 * 160.80749 * 14 12 11 17 17 N 1.48145 * 104.61683 * 87.19626 * 16 14 12 18 18 C 1.36940 * 127.84264 * 140.39285 * 17 16 14 19 19 H 1.07997 * 120.00410 * 195.59207 * 18 17 16 20 20 C 1.38813 * 119.99741 * 15.59199 * 18 17 16 21 21 N 1.31625 * 119.99894 * 9.09658 * 20 18 17 22 22 Si 1.86791 * 120.00062 * 189.09911 * 20 18 17 23 23 H 1.48500 * 109.47450 * 89.99525 * 22 20 18 24 24 H 1.48498 * 109.47287 * 209.99906 * 22 20 18 25 25 H 1.48506 * 109.47046 * 329.99917 * 22 20 18 26 26 C 1.48148 * 104.32186 * 320.40866 * 17 16 14 27 27 C 1.53004 * 117.44182 * 115.75595 * 12 11 10 28 28 H 1.08987 * 119.54401 * 355.88567 * 27 12 11 29 29 C 1.35754 * 109.74080 * 359.55555 * 7 6 5 30 30 C 1.40659 * 118.77806 * 359.97438 * 5 4 3 31 31 N 1.31438 * 119.40876 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47185 * 89.99308 * 1 2 3 33 33 H 1.08997 * 109.47178 * 209.99873 * 1 2 3 34 34 H 1.09005 * 109.46956 * 329.99809 * 1 2 3 35 35 H 1.07994 * 120.14515 * 0.03036 * 3 2 1 36 36 H 1.07993 * 120.82988 * 180.02562 * 4 3 2 37 37 H 0.97003 * 119.99889 * 0.02562 * 10 8 7 38 38 H 1.09000 * 109.46884 * 299.72491 * 11 10 8 39 39 H 1.08998 * 109.47118 * 59.72282 * 11 10 8 40 40 H 1.09006 * 110.40275 * 205.97206 * 16 14 12 41 41 H 1.08996 * 110.41228 * 328.40652 * 16 14 12 42 42 H 0.96994 * 119.99554 * 180.02562 * 21 20 18 43 43 H 1.08998 * 110.40875 * 280.80368 * 26 17 16 44 44 H 1.09002 * 110.50501 * 158.42441 * 26 17 16 45 45 H 1.07999 * 126.93229 * 180.28812 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1889 1.2097 0.0000 4 6 3.5710 1.2170 -0.0005 5 6 4.2386 -0.0057 -0.0016 6 8 5.5399 -0.3492 0.0034 7 6 5.6815 -1.6903 -0.0033 8 6 6.9674 -2.4061 -0.0043 9 8 6.9865 -3.6222 -0.0051 10 7 8.1239 -1.7140 -0.0044 11 6 9.4039 -2.4264 -0.0115 12 6 10.5511 -1.4141 -0.0168 13 1 10.3345 -0.4617 -0.5008 14 6 11.9742 -1.9617 -0.1429 15 1 12.1275 -3.0304 -0.2917 16 6 13.0882 -0.9948 -0.5987 17 7 13.5663 -0.3595 0.6513 18 6 14.8553 -0.0548 0.9991 19 1 15.0981 0.1722 2.0266 20 6 15.8498 -0.0376 0.0308 21 7 15.5305 -0.1360 -1.2423 22 14 17.6411 0.1253 0.5346 23 1 18.2195 -1.2254 0.7500 24 1 18.3957 0.8216 -0.5382 25 1 17.7322 0.9091 1.7927 26 6 12.3336 -0.1289 1.4400 27 6 11.4766 -1.3907 1.2013 28 1 11.2593 -2.0342 2.0537 29 6 4.4590 -2.2805 -0.0033 30 6 3.4810 -1.1908 -0.0016 31 7 2.1523 -1.1450 -0.0005 32 1 -0.3634 0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5139 35 1 1.6416 2.1407 0.0005 36 1 4.1196 2.1472 -0.0001 37 1 8.1087 -0.7441 -0.0034 38 1 9.4761 -3.0526 0.8778 39 1 9.4669 -3.0516 -0.9021 40 1 13.8971 -1.5460 -1.0783 41 1 12.6849 -0.2430 -1.2770 42 1 16.2255 -0.1244 -1.9188 43 1 11.8124 0.7582 1.0800 44 1 12.5714 -0.0256 2.4987 45 1 4.2499 -3.3401 -0.0035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978983879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:06 Heat of formation + Delta-G solvation = 45.087387 kcal Electronic energy + Delta-G solvation = -27538.631381 eV Core-core repulsion = 23523.674172 eV Total energy + Delta-G solvation = -4014.957209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -43.85402 -41.06876 -40.34783 -39.96426 -36.52238 -35.11644 -34.38526 -33.49491 -32.77968 -31.95052 -29.56814 -28.87814 -28.35331 -26.80533 -25.09029 -23.50294 -23.14963 -22.71349 -22.12107 -21.45922 -20.85420 -19.68643 -18.82792 -18.70059 -17.80924 -17.42348 -17.04413 -16.76978 -16.57895 -16.34981 -16.00670 -15.40634 -15.24649 -15.13056 -14.78009 -14.65094 -14.50920 -14.31231 -14.20057 -14.12418 -13.47697 -13.37810 -13.18999 -13.14926 -13.02080 -12.90366 -12.73734 -12.32658 -11.99617 -11.94943 -11.81472 -11.71578 -11.70103 -10.96814 -10.74672 -10.60048 -10.57562 -10.28409 -10.04235 -9.72014 -8.91071 -7.92272 -5.28500 -0.72222 -0.01467 0.58060 1.11850 1.46249 1.48137 1.56785 1.80050 1.85420 2.47270 2.56290 2.67692 2.84844 3.25303 3.27216 3.48631 3.57860 3.69123 3.73098 3.75509 3.83975 4.11164 4.13618 4.21410 4.26261 4.41798 4.44808 4.55302 4.61698 4.65357 4.69272 4.75093 4.81095 4.84956 4.92686 5.01675 5.03246 5.07598 5.10087 5.29637 5.35020 5.37256 5.44838 5.53421 5.66699 5.68806 6.17952 6.23775 6.76831 6.79485 7.00999 7.68132 8.46212 9.21414 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.027712 B = 0.001695 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.149997 B =16510.664296 C =17149.787682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.121 3.879 3 C -0.125 4.125 4 C -0.057 4.057 5 C -0.005 4.005 6 O -0.177 6.177 7 C -0.012 4.012 8 C 0.603 3.397 9 O -0.543 6.543 10 N -0.697 5.697 11 C 0.161 3.839 12 C -0.113 4.113 13 H 0.109 0.891 14 C -0.173 4.173 15 H 0.117 0.883 16 C 0.188 3.812 17 N -0.621 5.621 18 C -0.242 4.242 19 H 0.080 0.920 20 C -0.062 4.062 21 N -0.947 5.947 22 Si 0.979 3.021 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.267 1.267 26 C 0.148 3.852 27 C -0.161 4.161 28 H 0.127 0.873 29 C -0.111 4.111 30 C 0.040 3.960 31 N -0.475 5.475 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.197 0.803 36 H 0.179 0.821 37 H 0.419 0.581 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.002 0.998 42 H 0.250 0.750 43 H 0.027 0.973 44 H 0.056 0.944 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.280 3.196 2.617 31.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.025 4.025 3 C -0.144 4.144 4 C -0.083 4.083 5 C -0.056 4.056 6 O -0.077 6.077 7 C -0.063 4.063 8 C 0.388 3.612 9 O -0.422 6.422 10 N -0.347 5.347 11 C 0.038 3.962 12 C -0.132 4.132 13 H 0.127 0.873 14 C -0.193 4.193 15 H 0.135 0.865 16 C 0.062 3.938 17 N -0.345 5.345 18 C -0.370 4.370 19 H 0.098 0.902 20 C -0.256 4.256 21 N -0.595 5.595 22 Si 0.807 3.193 23 H -0.213 1.213 24 H -0.220 1.220 25 H -0.192 1.192 26 C 0.023 3.977 27 C -0.180 4.180 28 H 0.145 0.855 29 C -0.133 4.133 30 C -0.089 4.089 31 N -0.187 5.187 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.127 0.873 35 H 0.214 0.786 36 H 0.196 0.804 37 H 0.256 0.744 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.020 0.980 42 H 0.059 0.941 43 H 0.045 0.955 44 H 0.075 0.925 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -31.127 1.767 2.566 31.282 hybrid contribution 1.821 0.931 -0.127 2.049 sum -29.306 2.698 2.438 29.531 Atomic orbital electron populations 1.20860 0.85571 1.04939 1.04452 1.22107 0.98949 0.87376 0.94100 1.22433 0.92680 1.00944 0.98366 1.21038 0.94199 0.94899 0.98176 1.20990 0.81898 0.97848 1.04833 1.83971 1.25461 1.22058 1.76233 1.21833 0.95521 0.80724 1.08262 1.16611 0.81590 0.85839 0.77161 1.90892 1.86422 1.12969 1.51914 1.45827 1.04844 1.11563 1.72476 1.20881 0.79007 0.93033 1.03269 1.22400 0.89611 1.00289 1.00863 0.87320 1.23931 0.93194 0.99874 1.02314 0.86500 1.20810 0.92943 0.92013 0.87997 1.45529 1.01729 1.69510 1.17730 1.19390 0.83596 1.40559 0.93489 0.90190 1.25728 1.02572 1.02113 0.95168 1.70091 1.32482 1.57136 0.99774 0.85068 0.79399 0.77572 0.77225 1.21275 1.22042 1.19178 1.21296 0.86610 0.94128 0.95712 1.23947 1.01618 1.00336 0.92111 0.85534 1.22654 0.88595 1.00401 1.01610 1.20693 0.90964 0.92522 1.04670 1.66872 1.06994 1.31657 1.13168 0.88968 0.91084 0.87255 0.78641 0.80377 0.74422 0.90167 0.90061 0.92862 0.97994 0.94128 0.95536 0.92530 0.80262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 10.16 71.23 0.72 0.10 16 2 C 0.12 1.63 6.78 42.77 0.29 1.92 16 3 C -0.13 -1.06 9.71 22.42 0.22 -0.84 16 4 C -0.06 -0.68 10.19 22.52 0.23 -0.45 16 5 C -0.01 -0.11 7.42 23.12 0.17 0.07 16 6 O -0.18 -3.72 10.28 -10.87 -0.11 -3.83 16 7 C -0.01 -0.26 7.07 24.04 0.17 -0.09 16 8 C 0.60 14.87 7.80 86.59 0.68 15.54 16 9 O -0.54 -16.50 16.83 -4.13 -0.07 -16.57 16 10 N -0.70 -14.87 5.55 -466.64 -2.59 -17.46 16 11 C 0.16 3.73 5.95 86.38 0.51 4.25 16 12 C -0.11 -3.07 5.39 -10.79 -0.06 -3.13 16 13 H 0.11 2.95 8.04 -2.39 -0.02 2.93 16 14 C -0.17 -6.17 6.85 -9.88 -0.07 -6.24 16 15 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 16 C 0.19 9.07 5.70 86.53 0.49 9.57 16 17 N -0.62 -31.75 3.38 -688.14 -2.33 -34.08 16 18 C -0.24 -13.51 10.35 84.03 0.87 -12.64 16 19 H 0.08 4.28 7.84 -2.91 -0.02 4.26 16 20 C -0.06 -3.51 5.40 84.86 0.46 -3.06 16 21 N -0.95 -56.72 10.87 21.65 0.24 -56.49 16 22 Si 0.98 45.35 29.56 68.60 2.03 47.38 16 23 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 C 0.15 5.90 7.04 86.53 0.61 6.51 16 27 C -0.16 -5.15 6.74 -9.88 -0.07 -5.21 16 28 H 0.13 3.56 8.12 -2.39 -0.02 3.54 16 29 C -0.11 -2.58 10.81 23.83 0.26 -2.32 16 30 C 0.04 0.91 7.52 41.70 0.31 1.23 16 31 N -0.48 -10.17 10.32 -173.31 -1.79 -11.96 16 32 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.11 0.01 8.07 -2.38 -0.02 -0.01 16 35 H 0.20 -0.14 8.06 -2.91 -0.02 -0.16 16 36 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 37 H 0.42 7.47 8.12 -92.71 -0.75 6.72 16 38 H 0.08 1.86 7.94 -2.39 -0.02 1.84 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.05 2.94 6.51 -2.38 -0.02 2.93 16 41 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 43 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.18 3.85 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -74.94 383.12 1.45 -73.49 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.28 Total: 14.30 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 5.80 Total: 5.21 kcal Atomic # 7 Polarization: -113.52 SS G_CDS: -6.47 Total: -119.99 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.18 Total: -20.40 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -74.94 1.45 -73.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978983879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.576 kcal (2) G-P(sol) polarization free energy of solvation -74.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds