Wall clock time and date at job start Sat Apr 11 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00028 * 2 1 4 4 H 1.48504 * 109.46895 * 269.99599 * 3 2 1 5 5 H 1.48494 * 109.47630 * 29.99876 * 3 2 1 6 6 H 1.48506 * 109.47060 * 150.00124 * 3 2 1 7 7 C 1.38814 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99971 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00319 * 0.02562 * 7 2 1 10 10 C 1.47435 * 125.64724 * 359.95195 * 9 7 2 11 11 C 1.54904 * 104.83391 * 204.16628 * 10 9 7 12 12 C 1.55164 * 101.58098 * 322.99259 * 11 10 9 13 13 H 1.09002 * 110.72127 * 153.86399 * 12 11 10 14 14 N 1.46502 * 110.86896 * 277.06824 * 12 11 10 15 15 C 1.35312 * 125.87106 * 82.45665 * 14 12 11 16 16 C 1.35343 * 106.17413 * 179.97438 * 15 14 12 17 17 C 1.50710 * 126.75094 * 179.97438 * 16 15 14 18 18 N 1.46496 * 109.47083 * 94.99834 * 17 16 15 19 19 C 1.34777 * 120.00265 * 180.02562 * 18 17 16 20 20 O 1.21285 * 119.99463 * 359.97438 * 19 18 17 21 21 C 1.50694 * 120.00282 * 179.97438 * 19 18 17 22 22 H 1.09000 * 115.55033 * 325.67144 * 21 19 18 23 23 C 1.53003 * 117.49834 * 179.97438 * 21 19 18 24 24 C 1.52994 * 59.99936 * 252.51178 * 23 21 19 25 25 F 1.39899 * 117.49976 * 252.50529 * 24 23 21 26 26 F 1.39906 * 117.49988 * 107.49473 * 24 23 21 27 27 N 1.33768 * 106.50292 * 359.97438 * 16 15 14 28 28 N 1.28638 * 108.88046 * 359.73490 * 27 16 15 29 29 C 1.47022 * 125.65186 * 179.97438 * 9 7 2 30 30 H 0.97000 * 119.99871 * 359.97438 * 1 2 3 31 31 H 1.08997 * 110.36223 * 323.00847 * 10 9 7 32 32 H 1.09005 * 110.35921 * 85.32528 * 10 9 7 33 33 H 1.08995 * 111.00398 * 204.91709 * 11 10 9 34 34 H 1.09001 * 111.00339 * 81.06166 * 11 10 9 35 35 H 1.07998 * 126.90945 * 0.02562 * 15 14 12 36 36 H 1.08994 * 109.47122 * 215.00141 * 17 16 15 37 37 H 1.09004 * 109.46824 * 334.99719 * 17 16 15 38 38 H 0.97001 * 119.99998 * 0.02562 * 18 17 16 39 39 H 1.09000 * 117.50042 * 0.02562 * 23 21 19 40 40 H 1.09003 * 117.49594 * 144.99885 * 23 21 19 41 41 H 1.09002 * 109.87665 * 59.48574 * 29 9 7 42 42 H 1.08996 * 110.00949 * 298.39749 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1417 -2.5332 0.0010 11 6 -0.4017 -3.9319 0.6138 12 6 0.7782 -4.7524 0.0290 13 1 1.0240 -5.5919 0.6794 14 7 0.4681 -5.2209 -1.3240 15 6 0.5995 -4.5007 -2.4620 16 6 0.2059 -5.3134 -3.4701 17 6 0.1670 -4.9752 -4.9382 18 7 1.4047 -5.4296 -5.5769 19 6 1.5937 -5.2324 -6.8967 20 8 0.7389 -4.6791 -7.5556 21 6 2.8671 -5.6992 -7.5536 22 1 3.7641 -5.6367 -6.9376 23 6 3.0214 -5.4465 -9.0547 24 6 2.7670 -6.8646 -8.5398 25 9 3.8340 -7.7684 -8.5823 26 9 1.5004 -7.4153 -8.7628 27 7 -0.1420 -6.4760 -2.9071 28 7 0.0305 -6.3907 -1.6352 29 6 1.9316 -3.7275 0.0005 30 1 -0.4850 0.8401 0.0004 31 1 -0.5992 -1.7584 0.6162 32 1 -0.5276 -2.4874 -1.0174 33 1 -1.3591 -4.3325 0.2809 34 1 -0.3517 -3.8970 1.7022 35 1 0.9490 -3.4825 -2.5484 36 1 -0.6850 -5.4713 -5.4029 37 1 0.0701 -3.8964 -5.0601 38 1 2.0881 -5.8724 -5.0499 39 1 2.2021 -4.9422 -9.5670 40 1 4.0201 -5.2173 -9.4263 41 1 2.5586 -3.8506 0.8836 42 1 2.5292 -3.8665 -0.9004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999980412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:17 Heat of formation + Delta-G solvation = 31.935919 kcal Electronic energy + Delta-G solvation = -29277.688641 eV Core-core repulsion = 24740.224363 eV Total energy + Delta-G solvation = -4537.464278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.04825 -47.71700 -43.14873 -40.02833 -38.01529 -36.17301 -35.20215 -33.82040 -31.98312 -31.25168 -29.58822 -27.97355 -27.34986 -24.97836 -24.21028 -22.92970 -22.84164 -21.43970 -20.63841 -20.33785 -20.11931 -18.67084 -17.75793 -17.34694 -16.95346 -16.70107 -16.33871 -16.02857 -15.70721 -15.09462 -15.00989 -14.51359 -14.35654 -14.34453 -14.11434 -13.98825 -13.85359 -13.74623 -13.28686 -12.96310 -12.80723 -12.65600 -12.43295 -12.00651 -11.65546 -11.59725 -11.37989 -11.22163 -11.07890 -10.78522 -10.67992 -10.64819 -10.39167 -10.25103 -10.21846 -9.90649 -9.68981 -9.28220 -9.10226 -8.88565 -7.16561 -5.90117 -3.34998 1.78200 1.84414 2.30299 2.56149 2.61815 3.04454 3.07852 3.26415 3.31983 3.34152 3.76682 4.06252 4.17890 4.25935 4.31668 4.52380 4.67170 4.85744 4.96854 5.02370 5.09440 5.13544 5.22835 5.31204 5.32551 5.38409 5.54066 5.66605 5.84604 5.91086 6.10137 6.13088 6.13540 6.14629 6.20304 6.26933 6.88904 7.14534 7.21486 7.35059 7.57318 7.89923 8.06458 8.67778 8.94280 9.54526 10.14297 11.13729 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.012382 B = 0.002656 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.809184 B =10540.180722 C =11920.174364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 0.918 3.082 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.234 4.234 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.147 3.853 11 C -0.153 4.153 12 C 0.122 3.878 13 H 0.116 0.884 14 N -0.268 5.268 15 C 0.008 3.992 16 C -0.069 4.069 17 C 0.215 3.785 18 N -0.712 5.712 19 C 0.544 3.456 20 O -0.525 6.525 21 C -0.193 4.193 22 H 0.151 0.849 23 C -0.139 4.139 24 C 0.222 3.778 25 F -0.155 7.155 26 F -0.150 7.150 27 N -0.262 5.262 28 N -0.092 5.092 29 C 0.129 3.871 30 H 0.256 0.744 31 H 0.115 0.885 32 H 0.017 0.983 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.196 0.804 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.405 0.595 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.051 0.949 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.894 -10.725 -10.423 16.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.200 4.200 3 Si 0.747 3.253 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.022 3.978 11 C -0.192 4.192 12 C 0.020 3.980 13 H 0.134 0.866 14 N -0.060 5.060 15 C -0.146 4.146 16 C -0.208 4.208 17 C 0.091 3.909 18 N -0.363 5.363 19 C 0.329 3.671 20 O -0.402 6.402 21 C -0.216 4.216 22 H 0.169 0.831 23 C -0.177 4.177 24 C 0.184 3.816 25 F -0.136 7.136 26 F -0.130 7.130 27 N -0.129 5.129 28 N -0.071 5.071 29 C 0.002 3.998 30 H 0.067 0.933 31 H 0.133 0.867 32 H 0.035 0.965 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.212 0.788 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.239 0.761 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.069 0.931 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 4.770 -11.520 -10.299 16.172 hybrid contribution 1.163 1.431 0.184 1.854 sum 5.933 -10.088 -10.115 15.469 Atomic orbital electron populations 1.69749 1.04981 1.25332 1.56489 1.24810 0.95739 0.97930 1.01506 0.86040 0.78555 0.82925 0.77739 1.21384 1.21497 1.20567 1.19022 0.90546 0.81917 1.44666 0.90185 1.44522 1.01648 0.99283 1.87354 1.22083 0.84718 0.92274 0.98727 1.23506 0.95480 0.98794 1.01440 1.22931 0.99390 0.98399 0.77275 0.86644 1.47508 1.40501 1.09015 1.08980 1.23624 1.04712 1.01343 0.84875 1.21649 1.09828 0.92711 0.96584 1.19337 0.86777 1.00479 0.84318 1.45911 1.21296 1.60579 1.08510 1.19091 0.86566 0.79370 0.82095 1.90750 1.44062 1.42065 1.63281 1.23734 1.01149 1.00763 0.95921 0.83137 1.24310 1.07173 0.92624 0.93616 1.19666 0.73567 0.82235 1.06118 1.93063 1.53872 1.69864 1.96752 1.93095 1.37566 1.87313 1.95030 1.75004 1.17271 1.21351 0.99272 1.78249 1.16916 1.02753 1.09228 1.21634 0.92343 0.85783 1.00056 0.93342 0.86702 0.96464 0.91186 0.89278 0.78753 0.89465 0.89119 0.76087 0.84482 0.84914 0.93127 0.94791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.42 10.09 55.49 0.56 -23.86 16 2 C 0.00 -0.09 5.49 -17.43 -0.10 -0.18 16 3 Si 0.92 20.35 29.55 -169.99 -5.02 15.32 16 4 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.23 -5.76 10.27 -15.06 -0.15 -5.91 16 8 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.60 -13.09 3.39 -170.07 -0.58 -13.67 16 10 C 0.15 3.09 5.45 -2.53 -0.01 3.08 16 11 C -0.15 -2.50 6.78 -24.58 -0.17 -2.67 16 12 C 0.12 1.85 4.09 -66.09 -0.27 1.58 16 13 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 14 N -0.27 -4.28 3.36 -52.98 -0.18 -4.46 16 15 C 0.01 0.12 9.20 -17.05 -0.16 -0.03 16 16 C -0.07 -1.03 6.61 -82.78 -0.55 -1.58 16 17 C 0.22 2.77 6.23 -5.19 -0.03 2.74 16 18 N -0.71 -7.98 5.55 -61.47 -0.34 -8.32 16 19 C 0.54 6.39 7.25 -10.99 -0.08 6.31 16 20 O -0.53 -7.91 16.26 5.55 0.09 -7.82 16 21 C -0.19 -1.61 6.17 -91.77 -0.57 -2.17 16 22 H 0.15 0.83 8.14 -51.93 -0.42 0.41 16 23 C -0.14 -0.98 10.01 -26.73 -0.27 -1.24 16 24 C 0.22 2.07 5.20 -26.74 -0.14 1.93 16 25 F -0.16 -1.48 17.60 2.25 0.04 -1.44 16 26 F -0.15 -1.81 17.13 2.25 0.04 -1.77 16 27 N -0.26 -4.39 12.41 33.29 0.41 -3.97 16 28 N -0.09 -1.57 13.17 60.35 0.79 -0.77 16 29 C 0.13 2.22 6.29 -3.06 -0.02 2.20 16 30 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.12 2.81 5.87 -51.93 -0.30 2.50 16 32 H 0.02 0.39 7.40 -51.93 -0.38 0.01 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.20 3.20 7.70 -52.49 -0.40 2.80 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.40 3.88 8.46 -40.82 -0.35 3.53 16 39 H 0.14 1.06 7.67 -51.93 -0.40 0.66 16 40 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.03 0.58 7.29 -51.93 -0.38 0.20 16 LS Contribution 364.54 15.07 5.49 5.49 Total: -1.00 -30.03 364.54 -6.34 -36.37 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.14 Total: 4.85 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -2.51 Total: 4.04 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.67 Total: -55.06 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.09 Total: -7.82 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.08 Total: -3.21 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.03 -6.34 -36.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999980412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.307 kcal (2) G-P(sol) polarization free energy of solvation -30.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds