Wall clock time and date at job start Sat Apr 11 2020 06:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00028 * 2 1 4 4 H 1.48504 * 109.46895 * 269.99599 * 3 2 1 5 5 H 1.48494 * 109.47630 * 29.99876 * 3 2 1 6 6 H 1.48506 * 109.47060 * 150.00124 * 3 2 1 7 7 C 1.38814 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99971 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00319 * 0.02562 * 7 2 1 10 10 C 1.47435 * 125.64724 * 359.95195 * 9 7 2 11 11 C 1.54904 * 104.83391 * 204.16628 * 10 9 7 12 12 C 1.55164 * 101.58098 * 322.99259 * 11 10 9 13 13 H 1.09002 * 110.72127 * 153.86399 * 12 11 10 14 14 N 1.46502 * 110.86896 * 277.06824 * 12 11 10 15 15 C 1.35312 * 125.87106 * 82.45665 * 14 12 11 16 16 C 1.35343 * 106.17413 * 179.97438 * 15 14 12 17 17 C 1.50710 * 126.75094 * 179.97438 * 16 15 14 18 18 N 1.46496 * 109.47083 * 94.99834 * 17 16 15 19 19 C 1.34777 * 120.00265 * 180.02562 * 18 17 16 20 20 O 1.21285 * 119.99463 * 359.97438 * 19 18 17 21 21 C 1.50694 * 120.00282 * 179.97438 * 19 18 17 22 22 H 1.09000 * 115.55033 * 325.67144 * 21 19 18 23 23 C 1.53003 * 117.49834 * 179.97438 * 21 19 18 24 24 C 1.52994 * 59.99936 * 252.51178 * 23 21 19 25 25 F 1.39899 * 117.49976 * 252.50529 * 24 23 21 26 26 F 1.39906 * 117.49988 * 107.49473 * 24 23 21 27 27 N 1.33768 * 106.50292 * 359.97438 * 16 15 14 28 28 N 1.28638 * 108.88046 * 359.73490 * 27 16 15 29 29 C 1.47022 * 125.65186 * 179.97438 * 9 7 2 30 30 H 0.97000 * 119.99871 * 359.97438 * 1 2 3 31 31 H 1.08997 * 110.36223 * 323.00847 * 10 9 7 32 32 H 1.09005 * 110.35921 * 85.32528 * 10 9 7 33 33 H 1.08995 * 111.00398 * 204.91709 * 11 10 9 34 34 H 1.09001 * 111.00339 * 81.06166 * 11 10 9 35 35 H 1.07998 * 126.90945 * 0.02562 * 15 14 12 36 36 H 1.08994 * 109.47122 * 215.00141 * 17 16 15 37 37 H 1.09004 * 109.46824 * 334.99719 * 17 16 15 38 38 H 0.97001 * 119.99998 * 0.02562 * 18 17 16 39 39 H 1.09000 * 117.50042 * 0.02562 * 23 21 19 40 40 H 1.09003 * 117.49594 * 144.99885 * 23 21 19 41 41 H 1.09002 * 109.87665 * 59.48574 * 29 9 7 42 42 H 1.08996 * 110.00949 * 298.39749 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1417 -2.5332 0.0010 11 6 -0.4017 -3.9319 0.6138 12 6 0.7782 -4.7524 0.0290 13 1 1.0240 -5.5919 0.6794 14 7 0.4681 -5.2209 -1.3240 15 6 0.5995 -4.5007 -2.4620 16 6 0.2059 -5.3134 -3.4701 17 6 0.1670 -4.9752 -4.9382 18 7 1.4047 -5.4296 -5.5769 19 6 1.5937 -5.2324 -6.8967 20 8 0.7389 -4.6791 -7.5556 21 6 2.8671 -5.6992 -7.5536 22 1 3.7641 -5.6367 -6.9376 23 6 3.0214 -5.4465 -9.0547 24 6 2.7670 -6.8646 -8.5398 25 9 3.8340 -7.7684 -8.5823 26 9 1.5004 -7.4153 -8.7628 27 7 -0.1420 -6.4760 -2.9071 28 7 0.0305 -6.3907 -1.6352 29 6 1.9316 -3.7275 0.0005 30 1 -0.4850 0.8401 0.0004 31 1 -0.5992 -1.7584 0.6162 32 1 -0.5276 -2.4874 -1.0174 33 1 -1.3591 -4.3325 0.2809 34 1 -0.3517 -3.8970 1.7022 35 1 0.9490 -3.4825 -2.5484 36 1 -0.6850 -5.4713 -5.4029 37 1 0.0701 -3.8964 -5.0601 38 1 2.0881 -5.8724 -5.0499 39 1 2.2021 -4.9422 -9.5670 40 1 4.0201 -5.2173 -9.4263 41 1 2.5586 -3.8506 0.8836 42 1 2.5292 -3.8665 -0.9004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999980412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:16 Heat of formation + Delta-G solvation = 12.158185 kcal Electronic energy + Delta-G solvation = -29278.546268 eV Core-core repulsion = 24740.224363 eV Total energy + Delta-G solvation = -4538.321905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.79937 -48.48719 -44.42176 -40.97010 -39.48041 -36.96869 -36.23220 -35.33911 -33.54552 -32.48107 -31.18692 -29.42083 -28.46223 -26.66752 -25.09098 -24.21082 -23.59228 -22.73927 -21.94372 -21.52804 -21.37872 -19.48746 -19.06955 -18.61446 -18.13447 -17.64089 -17.24545 -17.07784 -16.86411 -16.67084 -16.15050 -15.82584 -15.60844 -15.43561 -15.13565 -15.08912 -14.71455 -14.62656 -14.53432 -14.34672 -13.96166 -13.89058 -13.59050 -13.29582 -13.06875 -12.82758 -12.81741 -12.65893 -12.34116 -12.23307 -12.09159 -12.03652 -11.89120 -11.62392 -11.49637 -11.12463 -10.99926 -10.74820 -10.33841 -10.27637 -8.95940 -7.80065 -5.24913 0.51476 1.00922 1.14304 1.31124 1.50174 1.51208 1.58957 1.94748 2.12935 2.29149 2.48111 3.11134 3.13121 3.32729 3.34342 3.39201 3.48470 3.53581 3.65972 3.73775 3.82667 3.96266 4.03175 4.32085 4.41186 4.48714 4.50212 4.58859 4.62333 4.74684 4.81531 4.82230 4.86566 4.89286 5.00322 5.16881 5.43750 5.52596 5.62499 5.74831 6.25706 6.31690 6.99151 7.06507 7.39641 7.72539 8.32594 9.21630 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.012382 B = 0.002656 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.809184 B =10540.180722 C =11920.174364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.059 4.059 3 Si 0.974 3.026 4 H -0.290 1.290 5 H -0.299 1.299 6 H -0.268 1.268 7 C -0.234 4.234 8 H 0.087 0.913 9 N -0.617 5.617 10 C 0.152 3.848 11 C -0.138 4.138 12 C 0.131 3.869 13 H 0.152 0.848 14 N -0.267 5.267 15 C 0.001 3.999 16 C -0.054 4.054 17 C 0.219 3.781 18 N -0.705 5.705 19 C 0.540 3.460 20 O -0.564 6.564 21 C -0.189 4.189 22 H 0.185 0.815 23 C -0.118 4.118 24 C 0.203 3.797 25 F -0.156 7.156 26 F -0.172 7.172 27 N -0.278 5.278 28 N -0.099 5.099 29 C 0.129 3.871 30 H 0.247 0.753 31 H 0.079 0.921 32 H -0.008 1.008 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.186 0.814 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.414 0.586 39 H 0.128 0.872 40 H 0.170 0.830 41 H 0.070 0.930 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.977 -11.731 -10.306 17.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.803 3.197 4 H -0.217 1.217 5 H -0.226 1.226 6 H -0.193 1.193 7 C -0.362 4.362 8 H 0.105 0.895 9 N -0.344 5.344 10 C 0.027 3.973 11 C -0.177 4.177 12 C 0.030 3.970 13 H 0.170 0.830 14 N -0.059 5.059 15 C -0.152 4.152 16 C -0.193 4.193 17 C 0.094 3.906 18 N -0.357 5.357 19 C 0.326 3.674 20 O -0.442 6.442 21 C -0.210 4.210 22 H 0.202 0.798 23 C -0.156 4.156 24 C 0.165 3.835 25 F -0.137 7.137 26 F -0.153 7.153 27 N -0.145 5.145 28 N -0.078 5.078 29 C 0.003 3.997 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.009 0.991 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.203 0.797 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.251 0.749 39 H 0.146 0.854 40 H 0.187 0.813 41 H 0.088 0.912 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.896 -12.576 -10.165 17.580 hybrid contribution 0.520 1.700 0.128 1.782 sum 7.417 -10.877 -10.037 16.555 Atomic orbital electron populations 1.69994 1.06139 1.25069 1.58299 1.25511 0.96416 1.00711 1.02537 0.85146 0.77764 0.79534 0.77271 1.21680 1.22590 1.19286 1.19366 0.91089 0.83066 1.42703 0.89520 1.44680 1.02092 1.00433 1.87206 1.21771 0.84445 0.94163 0.96906 1.23331 0.96333 0.95805 1.02242 1.22967 0.97707 0.98943 0.77365 0.83037 1.47577 1.40296 1.08812 1.09205 1.23541 1.05380 1.01038 0.85272 1.21783 1.08459 0.91884 0.97140 1.19240 0.87540 1.00475 0.83342 1.45830 1.20855 1.60294 1.08683 1.19668 0.87305 0.78554 0.81840 1.90733 1.45659 1.43832 1.64017 1.23817 1.00334 0.99938 0.96947 0.79820 1.24485 1.08828 0.89905 0.92374 1.19971 0.72775 0.82809 1.07903 1.93057 1.53676 1.70091 1.96865 1.93044 1.39207 1.87762 1.95281 1.74999 1.17938 1.22114 0.99444 1.78219 1.17260 1.02965 1.09364 1.21766 0.93089 0.83948 1.00932 0.94361 0.90277 0.99054 0.90687 0.87483 0.79677 0.90056 0.89096 0.74943 0.85354 0.81265 0.91204 0.94244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -51.71 10.09 21.65 0.22 -51.49 16 2 C -0.06 -3.00 5.49 84.86 0.47 -2.54 16 3 Si 0.97 42.02 29.55 68.60 2.03 44.05 16 4 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.30 -13.28 7.11 99.48 0.71 -12.58 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.23 -11.38 10.27 84.03 0.86 -10.51 16 8 H 0.09 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.62 -26.45 3.39 -691.98 -2.35 -28.80 16 10 C 0.15 6.47 5.45 86.85 0.47 6.94 16 11 C -0.14 -4.28 6.78 31.99 0.22 -4.07 16 12 C 0.13 3.63 4.09 46.18 0.19 3.82 16 13 H 0.15 3.22 8.14 -2.39 -0.02 3.20 16 14 N -0.27 -8.03 3.36 -321.53 -1.08 -9.11 16 15 C 0.00 0.04 9.20 83.49 0.77 0.81 16 16 C -0.05 -1.56 6.61 41.60 0.28 -1.29 16 17 C 0.22 5.59 6.23 85.64 0.53 6.12 16 18 N -0.71 -15.12 5.55 -466.79 -2.59 -17.71 16 19 C 0.54 12.18 7.25 87.65 0.64 12.81 16 20 O -0.56 -16.94 16.26 -3.05 -0.05 -16.99 16 21 C -0.19 -2.73 6.17 -11.54 -0.07 -2.80 16 22 H 0.18 1.37 8.14 -2.39 -0.02 1.35 16 23 C -0.12 -1.38 10.01 30.59 0.31 -1.08 16 24 C 0.20 3.49 5.20 30.59 0.16 3.65 16 25 F -0.16 -2.71 17.60 44.97 0.79 -1.92 16 26 F -0.17 -4.16 17.13 44.97 0.77 -3.39 16 27 N -0.28 -8.98 12.41 -48.60 -0.60 -9.59 16 28 N -0.10 -3.18 13.17 37.02 0.49 -2.70 16 29 C 0.13 4.12 6.29 86.73 0.55 4.66 16 30 H 0.25 13.36 8.31 -92.71 -0.77 12.59 16 31 H 0.08 3.98 5.87 -2.39 -0.01 3.97 16 32 H -0.01 -0.40 7.40 -2.38 -0.02 -0.42 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 35 H 0.19 6.10 7.70 -2.91 -0.02 6.07 16 36 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.41 7.27 8.46 -92.71 -0.78 6.49 16 39 H 0.13 1.81 7.67 -2.39 -0.02 1.79 16 40 H 0.17 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 42 H 0.04 1.26 7.29 -2.39 -0.02 1.24 16 Total: -1.00 -66.24 364.54 3.28 -62.95 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.30 Total: 18.15 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 5.36 Total: 16.53 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -5.92 Total: -119.38 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.05 Total: -16.99 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 1.56 Total: -5.31 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -66.24 3.28 -62.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999980412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.112 kcal (2) G-P(sol) polarization free energy of solvation -66.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds