Wall clock time and date at job start Sat Apr 11 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35308 * 126.66611 * 2 1 4 4 C 1.42275 * 103.92352 * 180.08921 * 3 2 1 5 5 C 1.48327 * 126.94281 * 179.91146 * 4 3 2 6 6 O 1.21497 * 119.99944 * 359.70832 * 5 4 3 7 7 N 1.34773 * 120.00144 * 179.70588 * 5 4 3 8 8 C 1.46502 * 119.99889 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47038 * 179.97438 * 8 7 5 10 10 C 1.37950 * 119.71693 * 260.00379 * 9 8 7 11 11 C 1.38218 * 119.83449 * 180.02562 * 10 9 8 12 12 C 1.38007 * 119.71330 * 0.26411 * 11 10 9 13 13 C 1.38786 * 120.50483 * 359.93348 * 12 11 10 14 14 C 1.37715 * 119.84799 * 359.57238 * 13 12 11 15 15 C 1.50599 * 122.85363 * 181.44989 * 14 13 12 16 16 C 1.53268 * 110.82839 * 339.69964 * 15 14 13 17 17 N 1.47223 * 107.66735 * 47.63855 * 16 15 14 18 18 C 1.36943 * 121.33371 * 115.81271 * 17 16 15 19 19 H 1.07997 * 119.99688 * 334.48691 * 18 17 16 20 20 C 1.38808 * 119.99859 * 154.77156 * 18 17 16 21 21 N 1.31618 * 120.00109 * 346.57870 * 20 18 17 22 22 Si 1.86806 * 119.99851 * 166.58844 * 20 18 17 23 23 H 1.48499 * 109.46765 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.46947 * 119.99542 * 22 20 18 25 25 H 1.48497 * 109.46887 * 239.99832 * 22 20 18 26 26 C 1.46685 * 117.33504 * 295.53814 * 17 16 15 27 27 N 1.30984 * 106.11801 * 359.64347 * 4 3 2 28 28 O 1.20904 * 111.44629 * 0.23404 * 27 4 3 29 29 H 1.09002 * 109.47587 * 180.28600 * 1 2 3 30 30 H 1.08997 * 109.47403 * 300.28397 * 1 2 3 31 31 H 1.09006 * 109.47378 * 60.28678 * 1 2 3 32 32 H 1.07998 * 128.04074 * 359.96856 * 3 2 1 33 33 H 0.97003 * 119.99928 * 0.02562 * 7 5 4 34 34 H 1.09003 * 109.47009 * 60.00397 * 8 7 5 35 35 H 1.08992 * 109.47293 * 300.00357 * 8 7 5 36 36 H 1.08003 * 120.07895 * 0.05441 * 10 9 8 37 37 H 1.07998 * 120.14587 * 180.23984 * 11 10 9 38 38 H 1.08004 * 119.74305 * 179.90547 * 12 11 10 39 39 H 1.08999 * 109.20409 * 100.16381 * 15 14 13 40 40 H 1.09004 * 109.20442 * 219.50613 * 15 14 13 41 41 H 1.09005 * 109.88373 * 288.11970 * 16 15 14 42 42 H 1.09002 * 109.91035 * 167.17040 * 16 15 14 43 43 H 0.97000 * 119.99737 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.43976 * 164.73486 * 26 17 16 45 45 H 1.08999 * 109.43765 * 284.61540 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0853 0.0000 4 6 3.6271 0.5353 -0.0022 5 6 4.9076 1.2840 -0.0049 6 8 4.9009 2.4989 -0.0108 7 7 6.0784 0.6166 -0.0007 8 6 7.3431 1.3561 -0.0040 9 6 8.4939 0.3832 0.0024 10 6 9.1495 0.1072 1.1844 11 6 10.2057 -0.7843 1.1930 12 6 10.6005 -1.3884 0.0166 13 6 9.9444 -1.1084 -1.1739 14 6 8.8853 -0.2281 -1.1822 15 6 8.1056 0.1001 -2.4281 16 6 8.9161 -0.2398 -3.6837 17 7 9.4647 -1.5947 -3.5082 18 6 9.0899 -2.6264 -4.3270 19 1 8.1313 -2.6005 -4.8238 20 6 9.9396 -3.7080 -4.5138 21 7 11.1960 -3.6321 -4.1290 22 14 9.2999 -5.2713 -5.3116 23 1 7.8638 -5.1024 -5.6500 24 1 10.0717 -5.5467 -6.5499 25 1 9.4553 -6.4077 -4.3684 26 6 10.4335 -1.7940 -2.4249 27 7 3.4760 -0.7658 0.0047 28 8 2.3072 -1.0751 0.0058 29 1 -0.3634 -1.0276 0.0051 30 1 -0.3634 0.5182 0.8874 31 1 -0.3634 0.5094 -0.8926 32 1 2.0301 2.1271 -0.0005 33 1 6.0838 -0.3534 0.0037 34 1 7.3969 1.9878 0.8827 35 1 7.3978 1.9784 -0.8972 36 1 8.8380 0.5863 2.1008 37 1 10.7200 -1.0070 2.1161 38 1 11.4267 -2.0840 0.0225 39 1 7.1782 -0.4726 -2.4319 40 1 7.8697 1.1643 -2.4335 41 1 9.7303 0.4749 -3.8042 42 1 8.2697 -0.2146 -4.5610 43 1 11.7896 -4.3882 -4.2592 44 1 10.5484 -2.8607 -2.2327 45 1 11.3956 -1.3729 -2.7167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051278534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:32 Heat of formation + Delta-G solvation = 72.385598 kcal Electronic energy + Delta-G solvation = -29067.079477 eV Core-core repulsion = 25053.306008 eV Total energy + Delta-G solvation = -4013.773469 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.31349 -40.07692 -39.16645 -36.01763 -35.07708 -34.39224 -33.65167 -32.71802 -31.64658 -30.14387 -28.88024 -28.17365 -26.57250 -25.57315 -24.19680 -23.17354 -22.85442 -22.13185 -20.56716 -20.17868 -19.02933 -18.07196 -17.85835 -17.04356 -16.80267 -16.12213 -15.77257 -15.48368 -14.88737 -14.63842 -14.59452 -14.29001 -14.04106 -13.85544 -13.68546 -13.59474 -13.29014 -12.95047 -12.81409 -12.73440 -12.57550 -12.40075 -11.96424 -11.71036 -11.53575 -11.27762 -10.96927 -10.88700 -10.76261 -10.68407 -10.46155 -10.36311 -10.15953 -9.91520 -9.74833 -9.71103 -9.18403 -8.71746 -8.30179 -7.89328 -6.79232 -5.85184 -3.26449 0.90999 1.40782 1.56966 1.86006 2.66619 2.96372 3.02761 3.34736 3.42457 3.44614 3.76803 4.14691 4.31339 4.44450 4.65745 4.80793 4.83345 4.97335 5.02388 5.10361 5.21089 5.24855 5.31163 5.38936 5.39500 5.48320 5.52632 5.63878 5.68742 5.81915 5.96453 6.09832 6.11157 6.19481 6.22468 6.45769 6.52966 6.64051 6.82276 6.82873 6.92852 7.09409 7.20494 7.28214 7.43404 7.60625 7.73818 7.77368 7.95963 8.33460 9.14033 9.75670 10.33654 11.25029 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009943 B = 0.003260 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.497399 B = 8585.940977 C =10407.697555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.036 4.036 3 C -0.186 4.186 4 C -0.024 4.024 5 C 0.598 3.402 6 O -0.528 6.528 7 N -0.702 5.702 8 C 0.166 3.834 9 C -0.128 4.128 10 C -0.116 4.116 11 C -0.132 4.132 12 C -0.111 4.111 13 C -0.077 4.077 14 C -0.044 4.044 15 C -0.101 4.101 16 C 0.142 3.858 17 N -0.593 5.593 18 C -0.247 4.247 19 H 0.070 0.930 20 C 0.000 4.000 21 N -0.910 5.910 22 Si 0.906 3.094 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.289 1.289 26 C 0.204 3.796 27 N -0.327 5.327 28 O 0.124 5.876 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.180 0.820 33 H 0.410 0.590 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.027 0.973 42 H 0.060 0.940 43 H 0.254 0.746 44 H 0.100 0.900 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.826 8.490 11.719 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 C -0.208 4.208 4 C -0.183 4.183 5 C 0.381 3.619 6 O -0.403 6.403 7 N -0.354 5.354 8 C 0.044 3.956 9 C -0.128 4.128 10 C -0.135 4.135 11 C -0.150 4.150 12 C -0.130 4.130 13 C -0.078 4.078 14 C -0.045 4.045 15 C -0.140 4.140 16 C 0.016 3.984 17 N -0.315 5.315 18 C -0.376 4.376 19 H 0.087 0.913 20 C -0.198 4.198 21 N -0.555 5.555 22 Si 0.736 3.264 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.215 1.215 26 C 0.079 3.921 27 N -0.028 5.028 28 O 0.047 5.953 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.198 0.802 33 H 0.246 0.754 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.118 0.882 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -14.769 8.245 11.657 20.542 hybrid contribution -0.432 -0.606 -0.274 0.793 sum -15.201 7.638 11.383 20.469 Atomic orbital electron populations 1.20377 0.83394 1.04983 1.04365 1.24524 0.96607 0.85485 1.03252 1.22408 0.89684 1.01541 1.07176 1.23517 0.96798 0.90162 1.07867 1.16868 0.81589 0.86320 0.77085 1.90792 1.86812 1.12424 1.50251 1.45999 1.04913 1.11292 1.73164 1.20259 0.79621 0.92825 1.02933 1.19748 0.98387 1.00730 0.93969 1.20751 0.97006 0.99156 0.96594 1.20938 0.97937 0.98203 0.97905 1.21210 0.99907 0.99715 0.92169 1.21063 0.93903 0.95223 0.97657 1.19446 0.95595 0.95432 0.94022 1.21133 0.98787 0.99599 0.94436 1.21006 0.95402 0.87824 0.94216 1.44011 1.50267 1.04100 1.33161 1.19227 0.99099 0.97161 1.22100 0.91265 1.25036 0.94840 0.99935 0.99950 1.69983 1.03406 1.30580 1.51519 0.86158 0.78280 0.83331 0.78655 1.20256 1.21622 1.21522 1.19809 0.90734 0.99866 0.81720 1.74234 0.97213 1.15575 1.15747 1.84811 1.11108 1.33462 1.65873 0.89585 0.88938 0.88874 0.80225 0.75414 0.90733 0.89974 0.86815 0.86590 0.86169 0.91233 0.91995 0.95457 0.92102 0.93541 0.88241 0.94141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.44 36.00 0.38 0.10 16 2 C -0.04 -0.30 7.47 -35.35 -0.26 -0.56 16 3 C -0.19 -1.88 10.92 -39.08 -0.43 -2.31 16 4 C -0.02 -0.32 7.19 -82.53 -0.59 -0.91 16 5 C 0.60 8.75 7.85 -12.11 -0.10 8.66 16 6 O -0.53 -8.78 16.95 5.37 0.09 -8.69 16 7 N -0.70 -9.86 5.52 -62.28 -0.34 -10.20 16 8 C 0.17 2.30 5.10 -5.19 -0.03 2.27 16 9 C -0.13 -1.97 5.25 -104.47 -0.55 -2.52 16 10 C -0.12 -1.67 9.65 -39.69 -0.38 -2.05 16 11 C -0.13 -1.95 10.05 -39.67 -0.40 -2.35 16 12 C -0.11 -1.93 9.62 -39.46 -0.38 -2.31 16 13 C -0.08 -1.54 5.82 -104.56 -0.61 -2.14 16 14 C -0.04 -0.81 5.76 -104.60 -0.60 -1.41 16 15 C -0.10 -1.82 5.25 -27.79 -0.15 -1.97 16 16 C 0.14 2.98 6.55 -3.51 -0.02 2.96 16 17 N -0.59 -14.82 2.97 -173.65 -0.52 -15.33 16 18 C -0.25 -6.72 9.71 -15.06 -0.15 -6.86 16 19 H 0.07 1.86 7.86 -52.49 -0.41 1.45 16 20 C 0.00 0.01 5.05 -17.43 -0.09 -0.08 16 21 N -0.91 -25.89 10.98 55.49 0.61 -25.28 16 22 Si 0.91 21.63 29.57 -169.99 -5.03 16.60 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.20 4.87 4.84 -5.04 -0.02 4.84 16 27 N -0.33 -4.36 11.84 33.30 0.39 -3.97 16 28 O 0.12 1.37 11.18 17.23 0.19 1.57 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.18 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.41 5.84 8.22 -40.82 -0.34 5.51 16 34 H 0.07 0.96 7.99 -51.93 -0.41 0.55 16 35 H 0.08 1.17 6.34 -51.93 -0.33 0.84 16 36 H 0.11 1.36 8.02 -52.48 -0.42 0.94 16 37 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.12 1.96 8.05 -52.48 -0.42 1.54 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.06 0.99 6.27 -51.93 -0.33 0.67 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 43 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16 44 H 0.10 2.62 6.29 -51.93 -0.33 2.30 16 45 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 377.15 15.07 5.68 5.68 Total: -1.00 -31.86 377.15 -9.21 -41.08 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.92 Total: 5.19 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -4.38 Total: -6.64 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.14 Total: -54.79 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: 0.28 Total: -7.12 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.86 -9.21 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051278534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.461 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds