Wall clock time and date at job start Sat Apr 11 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30010 * 127.33885 * 2 1 4 4 O 1.20661 * 112.30276 * 180.02562 * 3 2 1 5 5 C 1.33496 * 113.15478 * 0.02562 * 4 3 2 6 6 C 1.37364 * 106.33978 * 0.02562 * 5 4 3 7 7 C 1.47403 * 128.56058 * 179.97438 * 6 5 4 8 8 O 1.21607 * 119.99899 * 180.02562 * 7 6 5 9 9 N 1.34776 * 119.99744 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99490 * 180.02562 * 9 7 6 11 11 C 1.50706 * 109.46881 * 179.97438 * 10 9 7 12 12 C 1.37955 * 119.70943 * 259.99697 * 11 10 9 13 13 C 1.38221 * 119.82834 * 180.08160 * 12 11 10 14 14 C 1.38005 * 119.71331 * 0.25680 * 13 12 11 15 15 C 1.38788 * 120.50690 * 359.84907 * 14 13 12 16 16 C 1.37718 * 119.84865 * 359.43377 * 15 14 13 17 17 C 1.50592 * 122.84632 * 181.01952 * 16 15 14 18 18 C 1.52791 * 110.92551 * 340.16066 * 17 16 15 19 19 N 1.47225 * 107.90930 * 47.32012 * 18 17 16 20 20 C 1.36932 * 121.32833 * 115.77843 * 19 18 17 21 21 H 1.08001 * 120.00046 * 335.34861 * 20 19 18 22 22 C 1.38814 * 120.00084 * 155.35259 * 20 19 18 23 23 N 1.31619 * 119.99879 * 344.40334 * 22 20 19 24 24 Si 1.86798 * 120.00253 * 164.41054 * 22 20 19 25 25 H 1.48502 * 109.47162 * 92.95627 * 24 22 20 26 26 H 1.48498 * 109.47285 * 212.96144 * 24 22 20 27 27 H 1.48506 * 109.46939 * 332.96451 * 24 22 20 28 28 C 1.46688 * 117.34404 * 295.79774 * 19 18 17 29 29 H 1.09006 * 109.46796 * 89.96813 * 1 2 3 30 30 H 1.08996 * 109.47260 * 209.97447 * 1 2 3 31 31 H 1.08997 * 109.46878 * 329.97364 * 1 2 3 32 32 H 1.07999 * 126.82526 * 180.02562 * 5 4 3 33 33 H 0.96998 * 120.00430 * 359.97438 * 9 7 6 34 34 H 1.09007 * 109.47355 * 299.99535 * 10 9 7 35 35 H 1.08999 * 109.47390 * 59.99974 * 10 9 7 36 36 H 1.07998 * 120.08477 * 0.10482 * 12 11 10 37 37 H 1.07996 * 120.13979 * 180.28788 * 13 12 11 38 38 H 1.07998 * 119.73939 * 179.86121 * 14 13 12 39 39 H 1.09000 * 109.34007 * 219.66609 * 17 16 15 40 40 H 1.09002 * 108.94878 * 100.40196 * 17 16 15 41 41 H 1.09000 * 109.77025 * 287.71392 * 18 17 16 42 42 H 1.09000 * 109.76999 * 166.91897 * 18 17 16 43 43 H 0.97005 * 119.99801 * 180.02562 * 23 22 20 44 44 H 1.08996 * 109.43552 * 284.33011 * 28 19 18 45 45 H 1.09000 * 109.43156 * 164.46007 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4609 0.7206 -0.0005 5 6 3.6494 -0.6010 -0.0015 6 6 2.3991 -1.1697 -0.0022 7 6 2.0399 -2.5993 -0.0038 8 8 0.8703 -2.9324 -0.0047 9 7 3.0078 -3.5372 -0.0044 10 6 2.6508 -4.9580 -0.0066 11 6 3.9064 -5.7914 -0.0075 12 6 4.3614 -6.3412 -1.1881 13 6 5.5118 -7.1074 -1.1914 14 6 6.1945 -7.3213 -0.0113 15 6 5.7365 -6.7706 1.1774 16 6 4.5987 -5.9947 1.1798 17 6 4.0548 -5.3464 2.4255 18 6 4.5966 -6.0322 3.6787 19 7 6.0519 -6.1861 3.5173 20 6 6.9321 -5.5428 4.3458 21 1 6.6335 -4.6366 4.8520 22 6 8.2082 -6.0551 4.5351 23 7 8.4794 -7.2935 4.1810 24 14 9.5407 -4.9873 5.2925 25 1 9.5732 -5.2038 6.7613 26 1 10.8572 -5.3504 4.7093 27 1 9.2508 -3.5587 5.0092 28 6 6.5214 -7.0556 2.4332 29 1 -0.3633 0.0006 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3633 0.8897 0.5142 32 1 4.5967 -1.1197 -0.0017 33 1 3.9407 -3.2715 -0.0041 34 1 2.0632 -5.1865 0.8827 35 1 2.0646 -5.1840 -0.8974 36 1 3.8202 -6.1730 -2.1075 37 1 5.8750 -7.5363 -2.1136 38 1 7.0922 -7.9218 -0.0131 39 1 2.9669 -5.4137 2.4219 40 1 4.3488 -4.2969 2.4356 41 1 4.1326 -7.0119 3.7927 42 1 4.3856 -5.4192 4.5549 43 1 9.3711 -7.6517 4.3136 44 1 6.3828 -8.0983 2.7188 45 1 7.5794 -6.8679 2.2502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051299857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:38 Heat of formation + Delta-G solvation = 51.835968 kcal Electronic energy + Delta-G solvation = -29249.268151 eV Core-core repulsion = 25234.603583 eV Total energy + Delta-G solvation = -4014.664568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.95660 -41.23561 -40.28484 -37.64454 -36.17682 -35.47720 -34.47552 -33.63277 -32.60985 -31.75629 -30.37084 -29.68423 -27.52595 -27.31589 -25.17117 -24.77419 -23.73819 -22.36741 -21.77760 -21.56772 -20.59359 -19.33811 -18.77557 -18.63044 -17.68639 -17.28436 -17.01586 -16.70590 -16.49594 -15.92340 -15.82500 -15.72042 -15.38157 -14.90348 -14.69217 -14.41629 -14.24663 -14.15019 -14.08630 -13.93104 -13.55964 -13.43460 -13.34110 -13.23979 -12.79224 -12.73447 -12.50513 -12.38684 -12.33985 -12.15295 -11.83848 -11.60323 -11.35643 -11.26302 -10.97806 -10.81584 -10.67161 -10.12185 -9.54747 -9.29839 -8.76472 -7.90193 -5.32676 0.05768 0.36005 0.59015 0.72479 1.47313 1.48818 1.58247 1.90438 2.13176 2.29892 2.50210 2.93075 3.03176 3.27399 3.31242 3.62762 3.69161 3.81860 3.95457 3.99979 4.04764 4.18320 4.36180 4.41664 4.42259 4.57109 4.60075 4.62105 4.66709 4.76308 4.77716 4.80591 4.85359 5.01696 5.14208 5.15555 5.17367 5.19775 5.30028 5.41346 5.47274 5.60445 5.65856 5.72760 5.97387 6.18583 6.32509 6.42990 7.07853 7.11323 7.18277 7.80280 8.35174 9.18564 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010628 B = 0.003268 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.028722 B = 8564.943732 C =10130.921197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.057 3.943 3 N -0.382 5.382 4 O 0.093 5.907 5 C 0.028 3.972 6 C -0.280 4.280 7 C 0.600 3.400 8 O -0.564 6.564 9 N -0.703 5.703 10 C 0.173 3.827 11 C -0.114 4.114 12 C -0.101 4.101 13 C -0.121 4.121 14 C -0.122 4.122 15 C -0.106 4.106 16 C -0.056 4.056 17 C -0.086 4.086 18 C 0.136 3.864 19 N -0.610 5.610 20 C -0.258 4.258 21 H 0.072 0.928 22 C -0.051 4.051 23 N -0.939 5.939 24 Si 0.968 3.032 25 H -0.288 1.288 26 H -0.293 1.293 27 H -0.267 1.267 28 C 0.220 3.780 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.266 0.734 33 H 0.411 0.589 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.020 0.980 42 H 0.061 0.939 43 H 0.250 0.750 44 H 0.003 0.997 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.688 8.906 -14.049 19.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 N -0.092 5.092 4 O 0.036 5.964 5 C -0.054 4.054 6 C -0.287 4.287 7 C 0.387 3.613 8 O -0.445 6.445 9 N -0.354 5.354 10 C 0.050 3.950 11 C -0.115 4.115 12 C -0.120 4.120 13 C -0.139 4.139 14 C -0.141 4.141 15 C -0.108 4.108 16 C -0.057 4.057 17 C -0.124 4.124 18 C 0.010 3.990 19 N -0.333 5.333 20 C -0.388 4.388 21 H 0.090 0.910 22 C -0.246 4.246 23 N -0.585 5.585 24 Si 0.796 3.204 25 H -0.215 1.215 26 H -0.219 1.219 27 H -0.192 1.192 28 C 0.095 3.905 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.282 0.718 33 H 0.247 0.753 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.168 0.832 37 H 0.166 0.834 38 H 0.134 0.866 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.038 0.962 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.020 0.980 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.542 9.914 -13.996 20.674 hybrid contribution 1.579 -0.870 0.904 2.017 sum -9.964 9.044 -13.092 18.774 Atomic orbital electron populations 1.20298 0.84069 1.04450 1.04474 1.25247 0.99870 0.86582 0.98883 1.73694 0.89798 1.24170 1.21515 1.84560 1.21039 1.23956 1.66852 1.27194 1.01089 0.83145 0.93965 1.22293 0.93805 0.94960 1.17660 1.16892 0.85065 0.83486 0.75834 1.90772 1.19469 1.82454 1.51766 1.45783 1.09688 1.05696 1.74240 1.20133 0.93548 0.77989 1.03286 1.19793 0.97167 1.01495 0.93026 1.21185 0.96262 0.96990 0.97533 1.21265 0.95643 0.99202 0.97764 1.21279 1.00368 0.99921 0.92549 1.20642 0.96196 0.97561 0.96385 1.19449 0.94036 0.97024 0.95174 1.20864 0.99606 0.99363 0.92570 1.21070 0.84013 0.97419 0.96461 1.44244 1.01042 1.55053 1.32987 1.19498 0.94065 1.03619 1.21634 0.91012 1.25760 1.01243 0.96528 1.01079 1.70171 1.20714 1.14249 1.53391 0.85264 0.78576 0.78913 0.77695 1.21456 1.21899 1.19212 1.19325 0.96241 0.91302 0.83648 0.88865 0.89507 0.89389 0.71794 0.75292 0.90815 0.89497 0.83217 0.83377 0.86621 0.89693 0.90921 0.96208 0.92026 0.94053 0.97952 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.14 71.24 0.72 -0.65 16 2 C 0.06 1.24 7.58 45.16 0.34 1.58 16 3 N -0.38 -8.65 12.01 -44.78 -0.54 -9.19 16 4 O 0.09 1.75 11.06 76.95 0.85 2.60 16 5 C 0.03 0.40 11.85 67.61 0.80 1.20 16 6 C -0.28 -5.55 6.47 -18.74 -0.12 -5.67 16 7 C 0.60 13.39 7.81 86.66 0.68 14.06 16 8 O -0.56 -16.13 15.70 -4.05 -0.06 -16.19 16 9 N -0.70 -13.12 5.52 -470.12 -2.59 -15.71 16 10 C 0.17 3.55 5.10 85.64 0.44 3.98 16 11 C -0.11 -2.71 5.26 -19.76 -0.10 -2.82 16 12 C -0.10 -2.11 9.65 22.20 0.21 -1.89 16 13 C -0.12 -2.80 10.05 22.21 0.22 -2.58 16 14 C -0.12 -3.82 9.62 22.35 0.21 -3.60 16 15 C -0.11 -3.96 5.82 -19.82 -0.12 -4.07 16 16 C -0.06 -1.76 5.76 -19.85 -0.11 -1.88 16 17 C -0.09 -2.69 5.24 29.74 0.16 -2.53 16 18 C 0.14 5.44 6.52 86.17 0.56 6.00 16 19 N -0.61 -29.92 2.97 -704.22 -2.09 -32.01 16 20 C -0.26 -13.79 9.69 84.03 0.81 -12.97 16 21 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16 22 C -0.05 -2.78 4.99 84.86 0.42 -2.36 16 23 N -0.94 -54.27 11.09 21.65 0.24 -54.03 16 24 Si 0.97 43.60 29.58 68.60 2.03 45.63 16 25 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 26 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 28 C 0.22 10.52 4.85 85.63 0.42 10.94 16 29 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.09 1.74 7.11 -2.39 -0.02 1.73 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.27 1.24 7.68 -2.91 -0.02 1.22 16 33 H 0.41 6.21 7.65 -92.71 -0.71 5.50 16 34 H 0.07 1.67 6.34 -2.38 -0.02 1.66 16 35 H 0.09 1.62 7.99 -2.39 -0.02 1.60 16 36 H 0.15 2.16 8.02 -2.91 -0.02 2.14 16 37 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 38 H 0.12 3.59 8.05 -2.91 -0.02 3.56 16 39 H 0.08 2.30 6.25 -2.39 -0.01 2.28 16 40 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.06 2.39 7.96 -2.39 -0.02 2.37 16 43 H 0.25 14.03 8.31 -92.70 -0.77 13.26 16 44 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.06 3.31 6.34 -2.39 -0.02 3.30 16 Total: -1.00 -70.62 374.03 3.71 -66.91 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.33 Total: 15.24 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 5.55 Total: -3.26 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -4.98 Total: -110.94 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.79 Total: -13.59 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -70.62 3.71 -66.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051299857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.749 kcal (2) G-P(sol) polarization free energy of solvation -70.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds