Wall clock time and date at job start Sat Apr 11 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41264 * 126.70473 * 2 1 4 4 C 1.36823 * 103.84214 * 179.97438 * 3 2 1 5 5 C 1.47518 * 126.93915 * 179.97438 * 4 3 2 6 6 O 1.21584 * 119.99786 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99955 * 179.97438 * 5 4 3 8 8 C 1.46501 * 119.99896 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46973 * 180.02562 * 8 7 5 10 10 H 1.08992 * 109.76995 * 295.74927 * 9 8 7 11 11 C 1.52786 * 109.77646 * 174.99971 * 9 8 7 12 12 C 1.50604 * 110.86270 * 192.94389 * 11 9 8 13 13 C 1.38979 * 117.61387 * 199.58789 * 12 11 9 14 14 C 1.37901 * 120.58645 * 180.46280 * 13 12 11 15 15 C 1.38264 * 119.82407 * 0.03951 * 14 13 12 16 16 C 1.37956 * 119.72182 * 359.76490 * 15 14 13 17 17 C 1.37667 * 122.87030 * 19.69537 * 12 11 9 18 18 C 1.50819 * 122.36122 * 359.23930 * 17 12 11 19 19 N 1.46687 * 109.66231 * 11.09012 * 18 17 12 20 20 C 1.36942 * 121.34521 * 135.69236 * 19 18 17 21 21 H 1.07995 * 120.00030 * 207.49829 * 20 19 18 22 22 C 1.38810 * 119.99954 * 27.49658 * 20 19 18 23 23 N 1.31625 * 120.00157 * 10.32625 * 22 20 19 24 24 Si 1.86806 * 119.99936 * 190.32207 * 22 20 19 25 25 H 1.48497 * 109.46719 * 60.00516 * 24 22 20 26 26 H 1.48504 * 109.47057 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47035 * 300.00071 * 24 22 20 28 28 O 1.34638 * 106.11583 * 0.23921 * 4 3 2 29 29 N 1.20880 * 111.46763 * 359.56958 * 28 4 3 30 30 H 1.08998 * 109.47185 * 89.99830 * 1 2 3 31 31 H 1.09003 * 109.46928 * 210.00238 * 1 2 3 32 32 H 1.08997 * 109.46774 * 329.99924 * 1 2 3 33 33 H 1.07994 * 128.07301 * 359.96510 * 3 2 1 34 34 H 0.97000 * 120.00216 * 0.02562 * 7 5 4 35 35 H 1.09001 * 109.47101 * 60.00190 * 8 7 5 36 36 H 1.08998 * 109.47299 * 299.99875 * 8 7 5 37 37 H 1.09004 * 109.20141 * 313.30159 * 11 9 8 38 38 H 1.08994 * 109.19920 * 72.58837 * 11 9 8 39 39 H 1.07997 * 119.70174 * 0.48823 * 13 12 11 40 40 H 1.08000 * 120.08701 * 180.02562 * 14 13 12 41 41 H 1.08003 * 120.13663 * 179.78552 * 15 14 13 42 42 H 1.07993 * 119.74834 * 180.02562 * 16 15 14 43 43 H 1.09004 * 109.43561 * 251.03559 * 18 17 12 44 44 H 1.08995 * 109.43741 * 131.15246 * 18 17 12 45 45 H 0.97000 * 119.99737 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1325 0.0000 4 6 3.6121 0.6010 0.0006 5 6 4.8871 1.3430 0.0003 6 8 4.8828 2.5588 -0.0010 7 7 6.0566 0.6731 0.0015 8 6 7.3228 1.4100 0.0007 9 6 8.4891 0.4198 0.0017 10 1 8.4818 -0.1575 0.9261 11 6 9.8102 1.1769 -0.1245 12 6 10.9408 0.2337 -0.4411 13 6 12.2349 0.6696 -0.1825 14 6 13.3164 -0.1405 -0.4579 15 6 13.1143 -1.3975 -0.9970 16 6 11.8306 -1.8345 -1.2510 17 6 10.7409 -1.0214 -0.9701 18 6 9.3645 -1.5645 -1.2622 19 7 8.3753 -0.4869 -1.1528 20 6 7.3856 -0.3309 -2.0863 21 1 6.9629 0.6464 -2.2670 22 6 6.9256 -1.4289 -2.8003 23 7 7.2878 -2.6435 -2.4453 24 14 5.7925 -1.1826 -4.2649 25 1 6.4782 -0.3517 -5.2869 26 1 5.4464 -2.5027 -4.8504 27 1 4.5518 -0.4979 -3.8212 28 8 3.4539 -0.7361 -0.0045 29 7 2.2848 -1.0433 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 2.0678 2.1746 -0.0005 34 1 6.0600 -0.2969 0.0022 35 1 7.3782 2.0382 0.8898 36 1 7.3785 2.0356 -0.8902 37 1 9.7254 1.9154 -0.9218 38 1 10.0218 1.6876 0.8149 39 1 12.3948 1.6513 0.2384 40 1 14.3185 0.2062 -0.2534 41 1 13.9578 -2.0348 -1.2179 42 1 11.6723 -2.8165 -1.6717 43 1 9.1253 -2.3506 -0.5461 44 1 9.3434 -1.9752 -2.2716 45 1 6.9661 -3.4107 -2.9441 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054032248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:50 Heat of formation + Delta-G solvation = 75.979300 kcal Electronic energy + Delta-G solvation = -29828.345803 eV Core-core repulsion = 25814.728168 eV Total energy + Delta-G solvation = -4013.617635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.78335 -39.57842 -38.98488 -36.64770 -34.81749 -33.86407 -32.96244 -31.88640 -31.41739 -30.25064 -28.98188 -28.65541 -25.98636 -25.60427 -23.38066 -22.84723 -22.55343 -21.56257 -21.02897 -19.76462 -19.07800 -18.07202 -17.54808 -16.48572 -16.28919 -15.77443 -15.66492 -15.31077 -14.59697 -14.47708 -14.40284 -14.02008 -13.89180 -13.60174 -13.43841 -13.28269 -13.06577 -12.94144 -12.70330 -12.62740 -12.48527 -12.22739 -11.76002 -11.60126 -11.28844 -11.15440 -10.90890 -10.87917 -10.73981 -10.56430 -10.21785 -10.06047 -9.99632 -9.98808 -9.69899 -9.53258 -8.82145 -8.50413 -8.24873 -7.86436 -6.85449 -5.94161 -3.38521 1.06322 1.85371 1.93219 2.16994 2.92265 3.30791 3.36842 3.37402 3.39406 3.64078 4.15963 4.27443 4.35519 4.63389 5.08351 5.12802 5.18014 5.21929 5.25994 5.35223 5.36821 5.41828 5.45433 5.55195 5.62307 5.66873 5.70275 5.83721 5.91247 5.97560 6.01274 6.06742 6.15995 6.24259 6.26919 6.52796 6.60174 6.72765 6.85302 6.93118 6.94819 7.12513 7.17992 7.48524 7.62686 7.68918 7.86376 8.23349 8.29487 8.47640 9.04596 9.64354 10.22151 11.14750 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.003514 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.464743 B = 7966.292376 C = 9074.773344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.001 3.999 3 C -0.168 4.168 4 C -0.063 4.063 5 C 0.595 3.405 6 O -0.537 6.537 7 N -0.672 5.672 8 C 0.134 3.866 9 C 0.157 3.843 10 H 0.044 0.956 11 C -0.090 4.090 12 C -0.068 4.068 13 C -0.127 4.127 14 C -0.141 4.141 15 C -0.130 4.130 16 C -0.123 4.123 17 C -0.077 4.077 18 C 0.207 3.793 19 N -0.588 5.588 20 C -0.253 4.253 21 H 0.071 0.929 22 C 0.014 3.986 23 N -0.901 5.901 24 Si 0.896 3.104 25 H -0.283 1.283 26 H -0.289 1.289 27 H -0.283 1.283 28 O 0.128 5.872 29 N -0.349 5.349 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.180 0.820 34 H 0.423 0.577 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.043 0.957 44 H 0.099 0.901 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.073 4.813 6.371 8.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.157 4.157 3 C -0.190 4.190 4 C -0.129 4.129 5 C 0.378 3.622 6 O -0.416 6.416 7 N -0.322 5.322 8 C 0.010 3.990 9 C 0.050 3.950 10 H 0.062 0.938 11 C -0.129 4.129 12 C -0.069 4.069 13 C -0.145 4.145 14 C -0.159 4.159 15 C -0.148 4.148 16 C -0.142 4.142 17 C -0.079 4.079 18 C 0.082 3.918 19 N -0.312 5.312 20 C -0.382 4.382 21 H 0.088 0.912 22 C -0.186 4.186 23 N -0.544 5.544 24 Si 0.726 3.274 25 H -0.209 1.209 26 H -0.214 1.214 27 H -0.209 1.209 28 O 0.055 5.945 29 N -0.050 5.050 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.197 0.803 34 H 0.262 0.738 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.060 0.940 44 H 0.117 0.883 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.372 4.168 6.279 7.660 hybrid contribution -0.449 0.355 -1.029 1.178 sum -1.820 4.522 5.250 7.164 Atomic orbital electron populations 1.20149 0.85626 1.03737 1.03446 1.23608 0.99197 0.88601 1.04257 1.22752 0.90055 1.01420 1.04820 1.24419 0.97605 0.83911 1.07004 1.16514 0.81340 0.86035 0.78346 1.90807 1.86321 1.11913 1.52545 1.45860 1.04354 1.12213 1.69743 1.21404 0.81820 0.94207 1.01537 1.20721 0.91087 0.91205 0.92012 0.93789 1.20872 0.94145 0.97126 1.00787 1.19463 0.93794 0.94738 0.98867 1.21116 0.92523 0.99319 1.01584 1.20845 0.98073 0.95067 1.01883 1.20954 0.96748 0.96371 1.00754 1.21121 0.92176 0.99931 1.00968 1.21032 0.98503 0.93269 0.95054 1.19813 0.80497 0.89155 1.02334 1.44019 1.31181 1.32804 1.23209 1.19027 1.12485 0.93016 1.13669 0.91162 1.24999 0.98528 0.95194 0.99883 1.69923 1.47106 0.97145 1.40257 0.86460 0.80883 0.76967 0.83104 1.20910 1.21422 1.20937 1.85060 1.21010 1.22185 1.66264 1.73748 0.89468 1.24430 1.17326 0.90149 0.90484 0.89958 0.80294 0.73824 0.91692 0.90814 0.90740 0.91785 0.87090 0.87144 0.87014 0.86461 0.93955 0.88329 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.47 36.01 0.38 -0.32 16 2 C 0.00 0.01 7.31 -82.16 -0.60 -0.59 16 3 C -0.17 -2.48 10.91 -38.94 -0.43 -2.90 16 4 C -0.06 -1.09 7.29 -36.31 -0.26 -1.35 16 5 C 0.60 10.93 7.82 -12.48 -0.10 10.83 16 6 O -0.54 -10.65 16.91 5.29 0.09 -10.56 16 7 N -0.67 -12.25 4.08 -61.36 -0.25 -12.50 16 8 C 0.13 2.29 4.43 -4.04 -0.02 2.27 16 9 C 0.16 2.81 2.99 -67.64 -0.20 2.61 16 10 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.09 -1.45 5.21 -28.04 -0.15 -1.59 16 12 C -0.07 -1.19 5.76 -104.60 -0.60 -1.79 16 13 C -0.13 -1.94 9.59 -39.43 -0.38 -2.32 16 14 C -0.14 -2.02 10.04 -39.70 -0.40 -2.42 16 15 C -0.13 -1.94 10.05 -39.67 -0.40 -2.34 16 16 C -0.12 -2.11 9.62 -39.46 -0.38 -2.49 16 17 C -0.08 -1.47 5.82 -104.55 -0.61 -2.07 16 18 C 0.21 4.51 4.81 -5.03 -0.02 4.49 16 19 N -0.59 -12.76 2.86 -166.38 -0.48 -13.24 16 20 C -0.25 -6.05 7.11 -15.06 -0.11 -6.16 16 21 H 0.07 1.72 6.16 -52.49 -0.32 1.39 16 22 C 0.01 0.34 5.10 -17.43 -0.09 0.26 16 23 N -0.90 -23.60 10.99 55.49 0.61 -22.99 16 24 Si 0.90 21.11 29.57 -169.99 -5.03 16.09 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 O 0.13 2.35 11.04 15.56 0.17 2.52 16 29 N -0.35 -6.06 12.04 33.52 0.40 -5.65 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.18 2.19 8.06 -52.49 -0.42 1.77 16 34 H 0.42 8.24 7.31 -40.82 -0.30 7.94 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.36 7.25 -51.93 -0.38 0.98 16 37 H 0.07 1.23 8.03 -51.93 -0.42 0.81 16 38 H 0.06 0.87 8.11 -51.93 -0.42 0.44 16 39 H 0.11 1.43 8.05 -52.49 -0.42 1.01 16 40 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.11 1.38 8.06 -52.48 -0.42 0.95 16 42 H 0.12 1.89 8.05 -52.49 -0.42 1.47 16 43 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.10 2.42 6.40 -51.93 -0.33 2.09 16 45 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -28.30 373.86 -9.16 -37.47 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.95 Total: 9.14 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -4.36 Total: -5.90 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.29 Total: -54.38 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.26 Total: -8.04 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.30 -9.16 -37.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054032248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.444 kcal (2) G-P(sol) polarization free energy of solvation -28.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds