Wall clock time and date at job start Sat Apr 11 2020 06:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41264 * 126.70473 * 2 1 4 4 C 1.36823 * 103.84214 * 179.97438 * 3 2 1 5 5 C 1.47518 * 126.93915 * 179.97438 * 4 3 2 6 6 O 1.21584 * 119.99786 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99955 * 179.97438 * 5 4 3 8 8 C 1.46501 * 119.99896 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46973 * 180.02562 * 8 7 5 10 10 H 1.08992 * 109.76995 * 295.74927 * 9 8 7 11 11 C 1.52786 * 109.77646 * 174.99971 * 9 8 7 12 12 C 1.50604 * 110.86270 * 192.94389 * 11 9 8 13 13 C 1.38979 * 117.61387 * 199.58789 * 12 11 9 14 14 C 1.37901 * 120.58645 * 180.46280 * 13 12 11 15 15 C 1.38264 * 119.82407 * 0.03951 * 14 13 12 16 16 C 1.37956 * 119.72182 * 359.76490 * 15 14 13 17 17 C 1.37667 * 122.87030 * 19.69537 * 12 11 9 18 18 C 1.50819 * 122.36122 * 359.23930 * 17 12 11 19 19 N 1.46687 * 109.66231 * 11.09012 * 18 17 12 20 20 C 1.36942 * 121.34521 * 135.69236 * 19 18 17 21 21 H 1.07995 * 120.00030 * 207.49829 * 20 19 18 22 22 C 1.38810 * 119.99954 * 27.49658 * 20 19 18 23 23 N 1.31625 * 120.00157 * 10.32625 * 22 20 19 24 24 Si 1.86806 * 119.99936 * 190.32207 * 22 20 19 25 25 H 1.48497 * 109.46719 * 60.00516 * 24 22 20 26 26 H 1.48504 * 109.47057 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47035 * 300.00071 * 24 22 20 28 28 O 1.34638 * 106.11583 * 0.23921 * 4 3 2 29 29 N 1.20880 * 111.46763 * 359.56958 * 28 4 3 30 30 H 1.08998 * 109.47185 * 89.99830 * 1 2 3 31 31 H 1.09003 * 109.46928 * 210.00238 * 1 2 3 32 32 H 1.08997 * 109.46774 * 329.99924 * 1 2 3 33 33 H 1.07994 * 128.07301 * 359.96510 * 3 2 1 34 34 H 0.97000 * 120.00216 * 0.02562 * 7 5 4 35 35 H 1.09001 * 109.47101 * 60.00190 * 8 7 5 36 36 H 1.08998 * 109.47299 * 299.99875 * 8 7 5 37 37 H 1.09004 * 109.20141 * 313.30159 * 11 9 8 38 38 H 1.08994 * 109.19920 * 72.58837 * 11 9 8 39 39 H 1.07997 * 119.70174 * 0.48823 * 13 12 11 40 40 H 1.08000 * 120.08701 * 180.02562 * 14 13 12 41 41 H 1.08003 * 120.13663 * 179.78552 * 15 14 13 42 42 H 1.07993 * 119.74834 * 180.02562 * 16 15 14 43 43 H 1.09004 * 109.43561 * 251.03559 * 18 17 12 44 44 H 1.08995 * 109.43741 * 131.15246 * 18 17 12 45 45 H 0.97000 * 119.99737 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1325 0.0000 4 6 3.6121 0.6010 0.0006 5 6 4.8871 1.3430 0.0003 6 8 4.8828 2.5588 -0.0010 7 7 6.0566 0.6731 0.0015 8 6 7.3228 1.4100 0.0007 9 6 8.4891 0.4198 0.0017 10 1 8.4818 -0.1575 0.9261 11 6 9.8102 1.1769 -0.1245 12 6 10.9408 0.2337 -0.4411 13 6 12.2349 0.6696 -0.1825 14 6 13.3164 -0.1405 -0.4579 15 6 13.1143 -1.3975 -0.9970 16 6 11.8306 -1.8345 -1.2510 17 6 10.7409 -1.0214 -0.9701 18 6 9.3645 -1.5645 -1.2622 19 7 8.3753 -0.4869 -1.1528 20 6 7.3856 -0.3309 -2.0863 21 1 6.9629 0.6464 -2.2670 22 6 6.9256 -1.4289 -2.8003 23 7 7.2878 -2.6435 -2.4453 24 14 5.7925 -1.1826 -4.2649 25 1 6.4782 -0.3517 -5.2869 26 1 5.4464 -2.5027 -4.8504 27 1 4.5518 -0.4979 -3.8212 28 8 3.4539 -0.7361 -0.0045 29 7 2.2848 -1.0433 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 2.0678 2.1746 -0.0005 34 1 6.0600 -0.2969 0.0022 35 1 7.3782 2.0382 0.8898 36 1 7.3785 2.0356 -0.8902 37 1 9.7254 1.9154 -0.9218 38 1 10.0218 1.6876 0.8149 39 1 12.3948 1.6513 0.2384 40 1 14.3185 0.2062 -0.2534 41 1 13.9578 -2.0348 -1.2179 42 1 11.6723 -2.8165 -1.6717 43 1 9.1253 -2.3506 -0.5461 44 1 9.3434 -1.9752 -2.2716 45 1 6.9661 -3.4107 -2.9441 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054032248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:49 Heat of formation + Delta-G solvation = 60.729422 kcal Electronic energy + Delta-G solvation = -29829.007087 eV Core-core repulsion = 25814.728168 eV Total energy + Delta-G solvation = -4014.278919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.01965 -41.00850 -40.37173 -38.12681 -35.99913 -35.38813 -34.52491 -33.19212 -32.89449 -31.70573 -30.45824 -29.60193 -27.40100 -27.25888 -24.71373 -24.46070 -23.81082 -22.87166 -22.41749 -21.12002 -20.55575 -19.43166 -18.82507 -18.11345 -17.74201 -17.21320 -17.03223 -16.66280 -16.17631 -16.01290 -15.82077 -15.44593 -15.30752 -14.96900 -14.64477 -14.57695 -14.22704 -14.11089 -14.02459 -13.77935 -13.64751 -13.64152 -13.26878 -13.13656 -12.77475 -12.65832 -12.55892 -12.36613 -12.29072 -12.15932 -11.88295 -11.59407 -11.49729 -11.20829 -11.12593 -10.84656 -10.67456 -10.00382 -9.51087 -9.23602 -8.67478 -7.88566 -5.31399 -0.26263 0.61402 0.65346 1.02056 1.37700 1.41619 1.44558 1.60644 1.95448 2.27505 2.45256 3.00965 3.11023 3.30958 3.44327 3.54542 3.82873 3.89728 4.02680 4.13135 4.24417 4.26818 4.34452 4.41653 4.43014 4.51949 4.66564 4.67752 4.74721 4.75383 4.80323 4.84469 4.93174 4.94653 5.18319 5.22502 5.25209 5.29522 5.34563 5.49526 5.55413 5.67997 5.72874 5.77188 6.04467 6.29945 6.34018 6.39945 6.93376 7.06255 7.13863 7.80617 8.35792 9.18573 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.003514 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.464743 B = 7966.292376 C = 9074.773344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.013 3.987 3 C -0.153 4.153 4 C -0.089 4.089 5 C 0.598 3.402 6 O -0.553 6.553 7 N -0.677 5.677 8 C 0.137 3.863 9 C 0.157 3.843 10 H 0.045 0.955 11 C -0.083 4.083 12 C -0.083 4.083 13 C -0.126 4.126 14 C -0.132 4.132 15 C -0.128 4.128 16 C -0.139 4.139 17 C -0.108 4.108 18 C 0.223 3.777 19 N -0.600 5.600 20 C -0.231 4.231 21 H 0.067 0.933 22 C -0.030 4.030 23 N -0.925 5.925 24 Si 0.936 3.064 25 H -0.283 1.283 26 H -0.296 1.296 27 H -0.288 1.288 28 O 0.095 5.905 29 N -0.377 5.377 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.207 0.793 34 H 0.415 0.585 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.142 0.858 40 H 0.148 0.852 41 H 0.141 0.859 42 H 0.112 0.888 43 H 0.012 0.988 44 H 0.061 0.939 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.334 7.280 7.542 10.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.145 4.145 3 C -0.175 4.175 4 C -0.155 4.155 5 C 0.381 3.619 6 O -0.434 6.434 7 N -0.325 5.325 8 C 0.014 3.986 9 C 0.051 3.949 10 H 0.062 0.938 11 C -0.122 4.122 12 C -0.084 4.084 13 C -0.144 4.144 14 C -0.149 4.149 15 C -0.146 4.146 16 C -0.157 4.157 17 C -0.110 4.110 18 C 0.098 3.902 19 N -0.324 5.324 20 C -0.361 4.361 21 H 0.085 0.915 22 C -0.227 4.227 23 N -0.571 5.571 24 Si 0.767 3.233 25 H -0.209 1.209 26 H -0.222 1.222 27 H -0.215 1.215 28 O 0.027 5.973 29 N -0.083 5.083 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.131 0.869 33 H 0.224 0.776 34 H 0.252 0.748 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.160 0.840 40 H 0.166 0.834 41 H 0.159 0.841 42 H 0.130 0.870 43 H 0.030 0.970 44 H 0.079 0.921 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.580 6.668 7.461 10.023 hybrid contribution -0.662 -0.351 -1.332 1.528 sum -1.242 6.317 6.129 8.889 Atomic orbital electron populations 1.20419 0.82073 1.05633 1.04869 1.24407 1.01186 0.87508 1.01393 1.23212 0.88948 1.02784 1.02546 1.24443 0.98086 0.84067 1.08910 1.16605 0.81646 0.85891 0.77723 1.90782 1.86690 1.12392 1.53500 1.45932 1.04994 1.11814 1.69757 1.21458 0.81043 0.93860 1.02217 1.20886 0.92831 0.90826 0.90373 0.93752 1.20823 0.92314 0.96577 1.02508 1.19674 0.95506 0.94134 0.99039 1.21440 0.91453 1.00710 1.00787 1.21325 0.99662 0.94229 0.99733 1.21293 0.96329 0.97250 0.99723 1.21221 0.93077 0.99839 1.01597 1.20781 0.97025 0.95068 0.98105 1.19343 0.82761 0.88768 0.99369 1.44174 1.30762 1.33245 1.24256 1.19070 1.11610 0.92333 1.13088 0.91533 1.25416 1.00152 0.95355 1.01760 1.70051 1.48619 0.97315 1.41091 0.85820 0.79678 0.76170 0.81638 1.20921 1.22211 1.21511 1.85032 1.21796 1.22687 1.67773 1.73753 0.89520 1.25929 1.19122 0.88763 0.89812 0.86882 0.77575 0.74760 0.88898 0.92042 0.90954 0.88223 0.83991 0.83435 0.84135 0.86957 0.96977 0.92074 0.94207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 10.47 71.24 0.75 -0.45 16 2 C 0.01 0.36 7.31 43.56 0.32 0.68 16 3 C -0.15 -4.29 10.91 22.68 0.25 -4.05 16 4 C -0.09 -3.11 7.29 24.39 0.18 -2.94 16 5 C 0.60 22.11 7.82 86.69 0.68 22.79 16 6 O -0.55 -21.63 16.91 -3.98 -0.07 -21.69 16 7 N -0.68 -25.17 4.08 -466.29 -1.90 -27.07 16 8 C 0.14 4.64 4.43 86.38 0.38 5.02 16 9 C 0.16 5.61 2.99 44.78 0.13 5.74 16 10 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 11 C -0.08 -2.53 5.21 29.75 0.15 -2.37 16 12 C -0.08 -2.77 5.76 -19.85 -0.11 -2.89 16 13 C -0.13 -3.37 9.59 22.37 0.21 -3.16 16 14 C -0.13 -3.24 10.04 22.20 0.22 -3.02 16 15 C -0.13 -3.50 10.05 22.21 0.22 -3.28 16 16 C -0.14 -4.76 9.62 22.35 0.22 -4.55 16 17 C -0.11 -4.19 5.82 -19.82 -0.12 -4.31 16 18 C 0.22 10.32 4.81 85.64 0.41 10.73 16 19 N -0.60 -27.00 2.86 -680.31 -1.95 -28.95 16 20 C -0.23 -11.46 7.11 84.03 0.60 -10.86 16 21 H 0.07 3.34 6.16 -2.91 -0.02 3.32 16 22 C -0.03 -1.60 5.10 84.86 0.43 -1.17 16 23 N -0.92 -51.47 10.99 21.65 0.24 -51.24 16 24 Si 0.94 45.02 29.57 68.60 2.03 47.05 16 25 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 26 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 27 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 28 O 0.09 3.61 11.04 65.87 0.73 4.33 16 29 N -0.38 -13.20 12.04 -48.86 -0.59 -13.79 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.21 4.48 8.06 -2.91 -0.02 4.46 16 34 H 0.42 16.95 7.31 -92.71 -0.68 16.27 16 35 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.06 2.24 7.25 -2.39 -0.02 2.22 16 37 H 0.07 2.24 8.03 -2.38 -0.02 2.23 16 38 H 0.10 2.32 8.11 -2.39 -0.02 2.30 16 39 H 0.14 2.91 8.05 -2.91 -0.02 2.89 16 40 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 41 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 42 H 0.11 3.81 8.05 -2.91 -0.02 3.79 16 43 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 44 H 0.06 3.24 6.40 -2.39 -0.02 3.23 16 45 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -65.08 373.86 3.77 -61.31 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 0.35 Total: 28.12 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 4.93 Total: 1.93 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -4.20 Total: -121.05 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: 0.66 Total: -17.36 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -65.08 3.77 -61.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054032248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.043 kcal (2) G-P(sol) polarization free energy of solvation -65.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds