Wall clock time and date at job start Sat Apr 11 2020 06:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00296 * 2 1 4 4 H 1.48502 * 109.47283 * 265.20635 * 3 2 1 5 5 H 1.48505 * 109.47036 * 25.20604 * 3 2 1 6 6 H 1.48496 * 109.46980 * 145.20202 * 3 2 1 7 7 C 1.38810 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99508 * 332.98561 * 7 2 1 9 9 N 1.36933 * 120.00438 * 152.97815 * 7 2 1 10 10 C 1.47018 * 125.64791 * 349.72164 * 9 7 2 11 11 C 1.54326 * 107.27077 * 181.02164 * 10 9 7 12 12 H 1.08996 * 110.72115 * 140.55445 * 11 10 9 13 13 N 1.46505 * 110.71946 * 263.82892 * 11 10 9 14 14 C 1.34768 * 120.00084 * 273.54373 * 13 11 10 15 15 O 1.21283 * 120.00016 * 0.02562 * 14 13 11 16 16 C 1.50704 * 120.00211 * 179.97438 * 14 13 11 17 17 C 1.53785 * 113.61546 * 279.14237 * 16 14 13 18 18 C 1.53957 * 87.01821 * 220.04544 * 17 16 14 19 19 F 1.39900 * 113.53606 * 270.81027 * 18 17 16 20 20 F 1.39894 * 113.74050 * 139.94194 * 18 17 16 21 21 C 1.53778 * 113.61586 * 181.53159 * 16 14 13 22 22 C 1.55157 * 102.94369 * 22.19167 * 11 10 9 23 23 H 1.09000 * 111.00394 * 82.57215 * 22 11 10 24 24 N 1.46499 * 111.00690 * 206.38714 * 22 11 10 25 25 C 1.35315 * 125.86749 * 85.00053 * 24 22 11 26 26 C 1.35352 * 106.17533 * 180.02562 * 25 24 22 27 27 N 1.33776 * 106.49306 * 0.02562 * 26 25 24 28 28 N 1.28634 * 108.88977 * 359.73486 * 27 26 25 29 29 C 1.47432 * 125.64697 * 169.41087 * 9 7 2 30 30 H 0.97001 * 120.00024 * 185.04736 * 1 2 3 31 31 H 1.08994 * 109.88300 * 300.43777 * 10 9 7 32 32 H 1.09004 * 109.88225 * 61.60548 * 10 9 7 33 33 H 0.97001 * 119.99759 * 93.54987 * 13 11 10 34 34 H 1.09004 * 112.84828 * 50.33305 * 16 14 13 35 35 H 1.09007 * 113.61124 * 334.56342 * 17 16 14 36 36 H 1.09001 * 113.61529 * 105.46504 * 17 16 14 37 37 H 1.08995 * 113.61578 * 254.52816 * 21 16 14 38 38 H 1.08998 * 113.61284 * 25.43612 * 21 16 14 39 39 H 1.07999 * 126.91002 * 359.97438 * 25 24 22 40 40 H 1.07997 * 126.75256 * 180.02562 * 26 25 24 41 41 H 1.08998 * 110.36548 * 274.74830 * 29 9 7 42 42 H 1.08998 * 110.36594 * 37.07039 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5992 1.9879 -1.3952 5 1 1.4008 2.6798 0.5963 6 1 3.4934 1.4715 0.7990 7 6 2.0103 -1.2021 -0.0005 8 1 1.5586 -2.0866 0.4239 9 7 3.2675 -1.2666 -0.5393 10 6 3.9148 -0.2118 -1.3329 11 6 5.3061 -0.7371 -1.7452 12 1 5.5414 -0.4439 -2.7683 13 7 6.3356 -0.2608 -0.8181 14 6 6.9189 0.9378 -1.0168 15 8 6.5912 1.6223 -1.9628 16 6 7.9776 1.4280 -0.0628 17 6 7.4078 2.0470 1.2246 18 6 8.5116 3.1136 1.1045 19 9 9.7032 2.7590 1.7461 20 9 8.0839 4.4056 1.4283 21 6 8.5164 2.8268 -0.4063 22 6 5.1418 -2.2763 -1.6394 23 1 4.6771 -2.6823 -2.5379 24 7 6.4291 -2.9252 -1.3784 25 6 6.9973 -3.0988 -0.1627 26 6 8.1707 -3.7366 -0.3825 27 7 8.2619 -3.9189 -1.7047 28 7 7.2119 -3.4317 -2.2657 29 6 4.1987 -2.4028 -0.4142 30 1 -0.4850 -0.8368 0.0739 31 1 3.3206 0.0009 -2.2216 32 1 4.0227 0.6911 -0.7317 33 1 6.5975 -0.8082 -0.0613 34 1 8.7600 0.6906 0.1166 35 1 6.4002 2.4464 1.1082 36 1 7.5117 1.4064 2.1003 37 1 9.5140 2.8147 -0.8452 38 1 7.8125 3.4396 -0.9693 39 1 6.5957 -2.7899 0.7911 40 1 8.8915 -4.0387 0.3627 41 1 4.7660 -2.3279 0.5135 42 1 3.6535 -3.3459 -0.4514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069907940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:08 Heat of formation + Delta-G solvation = 34.261170 kcal Electronic energy + Delta-G solvation = -31091.391862 eV Core-core repulsion = 26554.028415 eV Total energy + Delta-G solvation = -4537.363447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.08052 -47.40289 -43.37428 -40.51814 -38.70044 -36.92760 -34.53721 -33.86245 -32.16802 -31.17642 -29.49694 -28.50216 -26.61222 -26.31758 -24.76768 -22.89648 -22.70454 -21.70672 -20.83871 -20.53689 -20.03955 -18.53632 -17.97748 -17.64968 -17.12451 -16.70624 -16.52366 -16.34531 -15.74084 -15.44991 -15.31481 -15.03457 -14.53129 -14.38954 -14.26879 -13.98392 -13.79146 -13.76519 -13.65500 -12.96972 -12.94292 -12.71956 -12.37285 -12.16126 -11.93463 -11.84937 -11.76682 -11.68754 -11.43788 -11.38937 -10.95965 -10.79040 -10.73616 -10.14209 -10.04528 -9.92350 -9.48821 -9.45595 -9.15380 -8.71000 -7.46869 -6.58181 -3.48868 1.51141 2.14764 2.34992 2.51024 2.84063 3.14421 3.29802 3.30888 3.44026 3.50800 3.88445 3.94177 4.08814 4.14171 4.26081 4.37899 4.44578 4.63065 4.70098 4.80618 4.88454 4.99413 5.05454 5.09520 5.12834 5.17164 5.19843 5.25217 5.37257 5.43577 5.63865 5.75490 5.79962 5.87398 5.99741 6.06035 6.21368 6.39824 6.54227 7.20655 7.30876 7.98085 8.07140 8.45543 8.74465 9.26680 9.88698 10.90203 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.007808 B = 0.005720 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3585.398297 B = 4894.002747 C = 7673.381464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.008 4.008 3 Si 1.061 2.939 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.344 4.344 8 H 0.082 0.918 9 N -0.597 5.597 10 C 0.106 3.894 11 C 0.130 3.870 12 H 0.113 0.887 13 N -0.716 5.716 14 C 0.531 3.469 15 O -0.526 6.526 16 C -0.134 4.134 17 C -0.152 4.152 18 C 0.257 3.743 19 F -0.178 7.178 20 F -0.186 7.186 21 C -0.140 4.140 22 C 0.115 3.885 23 H 0.139 0.861 24 N -0.270 5.270 25 C -0.058 4.058 26 C -0.051 4.051 27 N -0.277 5.277 28 N -0.080 5.080 29 C 0.132 3.868 30 H 0.267 0.733 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.398 0.602 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.190 0.810 40 H 0.188 0.812 41 H 0.034 0.966 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.360 -0.528 2.897 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.211 4.211 3 Si 0.894 3.106 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.470 4.470 8 H 0.100 0.900 9 N -0.325 5.325 10 C -0.020 4.020 11 C 0.024 3.976 12 H 0.131 0.869 13 N -0.368 5.368 14 C 0.317 3.683 15 O -0.401 6.401 16 C -0.155 4.155 17 C -0.190 4.190 18 C 0.220 3.780 19 F -0.159 7.159 20 F -0.166 7.166 21 C -0.178 4.178 22 C 0.011 3.989 23 H 0.157 0.843 24 N -0.063 5.063 25 C -0.209 4.209 26 C -0.209 4.209 27 N -0.142 5.142 28 N -0.060 5.060 29 C 0.004 3.996 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.234 0.766 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.146 0.854 39 H 0.207 0.793 40 H 0.206 0.794 41 H 0.051 0.949 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.017 1.364 0.686 17.085 hybrid contribution 0.190 -1.651 1.949 2.561 sum 17.207 -0.287 2.635 17.410 Atomic orbital electron populations 1.70922 1.05795 1.30369 1.47339 1.25750 0.96223 1.00726 0.98379 0.83829 0.73756 0.76331 0.76728 1.21613 1.22246 1.22211 1.19963 0.88423 0.97547 1.41064 0.90026 1.44685 1.14176 1.13055 1.60607 1.22229 0.89878 0.93312 0.96552 1.22381 0.89082 0.90901 0.95275 0.86938 1.45907 1.40373 1.20197 1.30340 1.20014 0.81844 0.80881 0.85601 1.90739 1.63372 1.55247 1.30775 1.22551 0.98518 0.98496 0.95933 1.24112 0.99898 0.96551 0.98425 1.21978 0.82628 0.79604 0.93776 1.93025 1.47815 1.91459 1.83626 1.93033 1.89310 1.40182 1.94099 1.23993 1.05192 0.95443 0.93217 1.23579 0.79137 0.91827 1.04355 0.84298 1.47373 1.16705 1.37014 1.05246 1.23679 0.97203 1.07851 0.92190 1.23587 0.98416 1.04392 0.94508 1.75118 1.14512 1.17682 1.06905 1.78347 0.98139 1.12058 1.17435 1.21867 0.91065 0.94697 0.91923 0.92251 0.92003 0.93531 0.76577 0.85493 0.86148 0.87664 0.88130 0.85414 0.79320 0.79450 0.94890 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.44 13.70 55.49 0.76 -25.68 16 2 C -0.01 -0.22 5.43 -17.43 -0.09 -0.31 16 3 Si 1.06 25.15 24.66 -169.99 -4.19 20.95 16 4 H -0.29 -6.68 6.76 56.52 0.38 -6.30 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -6.47 6.71 56.52 0.38 -6.09 16 7 C -0.34 -8.72 10.43 -15.06 -0.16 -8.88 16 8 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 9 N -0.60 -12.33 3.29 -169.93 -0.56 -12.88 16 10 C 0.11 2.04 4.68 -3.06 -0.01 2.03 16 11 C 0.13 1.95 3.12 -66.09 -0.21 1.74 16 12 H 0.11 1.70 7.70 -51.93 -0.40 1.30 16 13 N -0.72 -9.34 4.73 -52.03 -0.25 -9.58 16 14 C 0.53 7.18 7.35 -10.99 -0.08 7.10 16 15 O -0.53 -8.93 15.64 5.55 0.09 -8.84 16 16 C -0.13 -1.31 4.12 -90.96 -0.37 -1.68 16 17 C -0.15 -1.46 7.43 -25.82 -0.19 -1.65 16 18 C 0.26 2.62 3.28 -25.82 -0.08 2.54 16 19 F -0.18 -1.87 17.38 2.25 0.04 -1.84 16 20 F -0.19 -2.24 17.41 2.25 0.04 -2.20 16 21 C -0.14 -1.36 7.18 -25.92 -0.19 -1.55 16 22 C 0.11 1.55 3.98 -65.66 -0.26 1.29 16 23 H 0.14 1.82 8.14 -51.93 -0.42 1.40 16 24 N -0.27 -3.42 3.08 -52.56 -0.16 -3.59 16 25 C -0.06 -0.60 8.64 -17.05 -0.15 -0.74 16 26 C -0.05 -0.54 12.05 -17.73 -0.21 -0.75 16 27 N -0.28 -3.94 12.41 30.24 0.38 -3.56 16 28 N -0.08 -1.19 13.17 60.35 0.79 -0.40 16 29 C 0.13 2.06 6.56 -2.40 -0.02 2.04 16 30 H 0.27 7.67 8.73 -40.82 -0.36 7.31 16 31 H 0.06 1.27 7.82 -51.93 -0.41 0.86 16 32 H 0.05 0.98 3.67 -51.93 -0.19 0.79 16 33 H 0.40 4.32 6.20 -40.82 -0.25 4.06 16 34 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.12 1.32 8.09 -51.92 -0.42 0.90 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.13 1.39 7.45 -51.93 -0.39 1.00 16 39 H 0.19 1.40 6.60 -52.49 -0.35 1.06 16 40 H 0.19 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.03 0.47 6.25 -51.93 -0.32 0.14 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 349.64 15.07 5.27 5.27 Total: -1.00 -32.27 349.64 -4.70 -36.98 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -4.88 Total: 4.20 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -2.03 Total: 1.17 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.96 Total: -55.70 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.08 Total: -4.04 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -4.19 Total: 20.95 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.27 -4.70 -36.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069907940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.237 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds