Wall clock time and date at job start Sat Apr 11 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99780 * 2 1 4 4 H 1.48496 * 109.47389 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46786 * 300.00156 * 3 2 1 6 6 H 1.48501 * 109.47113 * 59.99981 * 3 2 1 7 7 C 1.38807 * 120.00580 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00516 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99658 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64998 * 359.95821 * 9 7 2 11 11 C 1.54915 * 104.83334 * 204.16451 * 10 9 7 12 12 H 1.09001 * 111.00387 * 81.05917 * 11 10 9 13 13 N 1.46496 * 111.00547 * 204.91767 * 11 10 9 14 14 C 1.34774 * 119.99681 * 267.19663 * 13 11 10 15 15 O 1.21273 * 120.00550 * 359.97438 * 14 13 11 16 16 C 1.50703 * 119.99732 * 179.97438 * 14 13 11 17 17 H 1.08999 * 115.55232 * 325.67143 * 16 14 13 18 18 C 1.53010 * 117.49657 * 111.37665 * 16 14 13 19 19 C 1.52999 * 117.49947 * 179.97438 * 16 14 13 20 20 H 1.08998 * 117.49550 * 0.02562 * 19 16 14 21 21 C 1.53001 * 117.49847 * 144.99820 * 19 16 14 22 22 F 1.39898 * 109.47194 * 180.02562 * 21 19 16 23 23 F 1.39896 * 109.47212 * 300.00638 * 21 19 16 24 24 C 1.55165 * 101.57980 * 322.99105 * 11 10 9 25 25 H 1.09002 * 110.71751 * 153.86437 * 24 11 10 26 26 N 1.46504 * 110.71935 * 277.13806 * 24 11 10 27 27 C 1.35309 * 125.86437 * 79.97594 * 26 24 11 28 28 C 1.35349 * 106.17179 * 179.97438 * 27 26 24 29 29 N 1.33776 * 106.49642 * 0.02562 * 28 27 26 30 30 N 1.28628 * 108.88646 * 359.73541 * 29 28 27 31 31 C 1.47022 * 125.64666 * 180.02562 * 9 7 2 32 32 H 0.96996 * 120.00418 * 359.97438 * 1 2 3 33 33 H 1.08997 * 110.36855 * 323.00192 * 10 9 7 34 34 H 1.08999 * 110.36490 * 85.21507 * 10 9 7 35 35 H 0.97002 * 120.00223 * 87.19063 * 13 11 10 36 36 H 1.08994 * 117.49592 * 214.97827 * 18 16 14 37 37 H 1.09003 * 117.49709 * 0.02562 * 18 16 14 38 38 H 1.09004 * 109.46457 * 60.00635 * 21 19 16 39 39 H 1.07998 * 126.91562 * 0.02766 * 27 26 24 40 40 H 1.08000 * 126.75648 * 180.02562 * 28 27 26 41 41 H 1.08997 * 109.88723 * 59.48965 * 31 9 7 42 42 H 1.08998 * 109.88661 * 298.31946 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1414 -2.5332 0.0009 11 6 -0.4009 -3.9323 0.6133 12 1 -0.3501 -3.8979 1.7016 13 7 -1.6879 -4.4707 0.1664 14 6 -2.7964 -4.2679 0.9058 15 8 -2.7284 -3.6402 1.9412 16 6 -4.1205 -4.8212 0.4458 17 1 -4.2739 -4.8377 -0.6333 18 6 -4.7332 -5.9596 1.2643 19 6 -5.3416 -4.5577 1.3292 20 1 -5.1872 -3.9837 2.2429 21 6 -6.6847 -4.3368 0.6304 22 9 -7.6780 -4.1119 1.5895 23 9 -6.5934 -3.2261 -0.2151 24 6 0.7787 -4.7525 0.0273 25 1 1.0250 -5.5922 0.6772 26 7 0.4649 -5.2173 -1.3261 27 6 0.5500 -4.4796 -2.4573 28 6 0.1716 -5.2955 -3.4688 29 7 -0.1231 -6.4766 -2.9141 30 7 0.0660 -6.3990 -1.6441 31 6 1.9320 -3.7274 -0.0005 32 1 -0.4850 0.8400 0.0004 33 1 -0.5987 -1.7588 0.6167 34 1 -0.5283 -2.4851 -1.0170 35 1 -1.7424 -4.9730 -0.6616 36 1 -5.2897 -6.7252 0.7237 37 1 -4.1787 -6.3079 2.1357 38 1 -6.9386 -5.2200 0.0440 39 1 0.8586 -3.4477 -2.5371 40 1 0.1181 -5.0428 -4.5174 41 1 2.5590 -3.8505 0.8825 42 1 2.5279 -3.8646 -0.9028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069917191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:11 Heat of formation + Delta-G solvation = 29.193007 kcal Electronic energy + Delta-G solvation = -30437.246212 eV Core-core repulsion = 25899.662993 eV Total energy + Delta-G solvation = -4537.583219 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.06735 -47.09523 -43.12093 -40.05469 -38.28291 -36.60278 -34.28338 -33.55612 -31.81173 -30.73429 -29.10975 -28.00170 -27.23623 -25.17292 -24.08548 -22.59871 -22.40093 -21.77855 -20.62422 -20.25342 -20.01136 -18.23100 -17.68806 -17.34335 -17.15267 -16.96724 -16.57020 -15.75316 -15.51040 -15.07250 -14.72553 -14.65000 -14.28006 -14.05976 -13.99118 -13.53765 -13.51191 -13.45221 -13.10043 -12.95828 -12.74277 -12.47155 -12.39843 -11.96995 -11.53002 -11.43295 -11.21850 -11.07549 -10.99606 -10.91590 -10.78054 -10.73171 -10.54405 -10.20601 -10.04647 -9.91682 -9.78100 -9.14208 -8.88852 -8.79004 -7.17558 -5.87683 -3.34634 1.82164 2.43040 2.50014 2.76892 3.02731 3.28943 3.32107 3.34439 3.37725 3.62623 3.96285 4.19039 4.26843 4.33583 4.51931 4.60099 4.63337 4.82968 4.86798 4.95431 4.99623 5.02235 5.26124 5.28785 5.35326 5.44600 5.51413 5.57763 5.69957 5.77225 5.77585 6.01250 6.08761 6.13511 6.36147 6.46843 6.86820 7.07753 7.35619 7.54402 7.62503 8.06877 8.31211 8.70457 8.93933 9.54746 10.11670 11.15529 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.009156 B = 0.003958 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.397928 B = 7072.123753 C = 9096.384781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.001 4.001 3 Si 0.918 3.082 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.237 4.237 8 H 0.083 0.917 9 N -0.598 5.598 10 C 0.143 3.857 11 C 0.110 3.890 12 H 0.117 0.883 13 N -0.710 5.710 14 C 0.547 3.453 15 O -0.528 6.528 16 C -0.165 4.165 17 H 0.130 0.870 18 C -0.127 4.127 19 C -0.191 4.191 20 H 0.142 0.858 21 C 0.297 3.703 22 F -0.201 7.201 23 F -0.199 7.199 24 C 0.117 3.883 25 H 0.121 0.879 26 N -0.277 5.277 27 C -0.017 4.017 28 C -0.068 4.068 29 N -0.277 5.277 30 N -0.102 5.102 31 C 0.129 3.871 32 H 0.257 0.743 33 H 0.122 0.878 34 H 0.023 0.977 35 H 0.397 0.603 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.195 0.805 40 H 0.186 0.814 41 H 0.056 0.944 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.380 -12.392 -1.519 14.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.748 3.252 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.365 4.365 8 H 0.101 0.899 9 N -0.326 5.326 10 C 0.017 3.983 11 C 0.003 3.997 12 H 0.135 0.865 13 N -0.360 5.360 14 C 0.332 3.668 15 O -0.404 6.404 16 C -0.187 4.187 17 H 0.148 0.852 18 C -0.165 4.165 19 C -0.210 4.210 20 H 0.159 0.841 21 C 0.243 3.757 22 F -0.182 7.182 23 F -0.180 7.180 24 C 0.014 3.986 25 H 0.139 0.861 26 N -0.071 5.071 27 C -0.169 4.169 28 C -0.225 4.225 29 N -0.144 5.144 30 N -0.081 5.081 31 C 0.002 3.998 32 H 0.068 0.932 33 H 0.140 0.860 34 H 0.041 0.959 35 H 0.231 0.769 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.212 0.788 40 H 0.203 0.797 41 H 0.073 0.927 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.738 -13.071 -0.223 15.191 hybrid contribution 0.753 1.949 -0.909 2.278 sum -6.985 -11.122 -1.132 13.182 Atomic orbital electron populations 1.69745 1.04969 1.25399 1.55950 1.24838 0.95713 0.98011 1.01227 0.85961 0.78631 0.83158 0.77439 1.20365 1.21551 1.21486 1.19057 0.90573 0.81619 1.45232 0.89872 1.44402 1.01256 0.99378 1.87518 1.22426 0.84908 0.91770 0.99163 1.23097 0.79507 0.96012 1.01061 0.86493 1.45644 1.07683 1.56398 1.26309 1.19309 0.84191 0.79502 0.83796 1.90742 1.85720 1.39786 1.24130 1.22194 0.92071 1.04756 0.99655 0.85242 1.23117 1.01267 0.90017 1.02068 1.23349 0.91510 1.02802 1.03347 0.84057 1.21282 0.85389 0.87207 0.81809 1.92993 1.63502 1.95788 1.65933 1.93031 1.96538 1.57047 1.71429 1.23220 0.98622 0.98832 0.77954 0.86109 1.47449 1.42375 1.08388 1.08855 1.23933 1.06138 1.01583 0.85234 1.23552 1.07218 0.90665 1.01077 1.75042 1.17917 1.22017 0.99379 1.78259 1.17847 1.02203 1.09773 1.21666 0.92099 0.85347 1.00689 0.93249 0.86041 0.95943 0.76851 0.86899 0.86895 0.87027 0.78845 0.79674 0.92672 0.94065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.06 10.09 55.49 0.56 -24.50 16 2 C 0.00 -0.02 5.49 -17.43 -0.10 -0.12 16 3 Si 0.92 20.72 29.55 -169.99 -5.02 15.70 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.24 -5.89 10.27 -15.06 -0.15 -6.05 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -13.10 3.39 -170.07 -0.58 -13.68 16 10 C 0.14 3.10 5.06 -2.53 -0.01 3.09 16 11 C 0.11 1.91 3.29 -65.78 -0.22 1.69 16 12 H 0.12 2.14 7.54 -51.93 -0.39 1.75 16 13 N -0.71 -11.09 5.16 -51.72 -0.27 -11.35 16 14 C 0.55 8.75 7.61 -10.98 -0.08 8.67 16 15 O -0.53 -10.45 15.90 5.56 0.09 -10.37 16 16 C -0.17 -1.94 5.87 -91.77 -0.54 -2.48 16 17 H 0.13 1.31 8.14 -51.93 -0.42 0.89 16 18 C -0.13 -1.09 9.88 -26.75 -0.26 -1.36 16 19 C -0.19 -2.09 5.40 -90.64 -0.49 -2.58 16 20 H 0.14 1.85 7.67 -51.93 -0.40 1.45 16 21 C 0.30 2.93 5.50 37.16 0.20 3.14 16 22 F -0.20 -2.30 17.34 2.25 0.04 -2.26 16 23 F -0.20 -2.57 17.29 2.25 0.04 -2.53 16 24 C 0.12 1.76 3.97 -66.09 -0.26 1.50 16 25 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 26 N -0.28 -4.18 2.23 -52.98 -0.12 -4.30 16 27 C -0.02 -0.26 9.23 -17.05 -0.16 -0.42 16 28 C -0.07 -0.95 12.05 -17.74 -0.21 -1.16 16 29 N -0.28 -4.36 12.41 30.24 0.38 -3.98 16 30 N -0.10 -1.60 12.59 60.35 0.76 -0.84 16 31 C 0.13 2.21 6.32 -3.06 -0.02 2.19 16 32 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.12 3.21 5.87 -51.93 -0.31 2.90 16 34 H 0.02 0.52 7.16 -51.93 -0.37 0.15 16 35 H 0.40 5.86 7.04 -40.82 -0.29 5.58 16 36 H 0.11 0.63 8.05 -51.93 -0.42 0.21 16 37 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.11 0.67 7.90 -51.93 -0.41 0.26 16 39 H 0.19 3.10 7.58 -52.49 -0.40 2.71 16 40 H 0.19 1.96 8.06 -52.49 -0.42 1.54 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.04 0.70 7.42 -51.93 -0.39 0.32 16 LS Contribution 360.22 15.07 5.43 5.43 Total: -1.00 -30.58 360.22 -6.02 -36.61 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -5.02 Total: 9.97 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -2.30 Total: 6.11 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.73 Total: -58.66 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.08 Total: -4.80 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.58 -6.02 -36.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069917191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.802 kcal (2) G-P(sol) polarization free energy of solvation -30.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds