Wall clock time and date at job start Sat Apr 11 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99780 * 2 1 4 4 H 1.48496 * 109.47389 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46786 * 300.00156 * 3 2 1 6 6 H 1.48501 * 109.47113 * 59.99981 * 3 2 1 7 7 C 1.38807 * 120.00580 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00516 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99658 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64998 * 359.95821 * 9 7 2 11 11 C 1.54915 * 104.83334 * 204.16451 * 10 9 7 12 12 H 1.09001 * 111.00387 * 81.05917 * 11 10 9 13 13 N 1.46496 * 111.00547 * 204.91767 * 11 10 9 14 14 C 1.34774 * 119.99681 * 267.19663 * 13 11 10 15 15 O 1.21273 * 120.00550 * 359.97438 * 14 13 11 16 16 C 1.50703 * 119.99732 * 179.97438 * 14 13 11 17 17 H 1.08999 * 115.55232 * 325.67143 * 16 14 13 18 18 C 1.53010 * 117.49657 * 111.37665 * 16 14 13 19 19 C 1.52999 * 117.49947 * 179.97438 * 16 14 13 20 20 H 1.08998 * 117.49550 * 0.02562 * 19 16 14 21 21 C 1.53001 * 117.49847 * 144.99820 * 19 16 14 22 22 F 1.39898 * 109.47194 * 180.02562 * 21 19 16 23 23 F 1.39896 * 109.47212 * 300.00638 * 21 19 16 24 24 C 1.55165 * 101.57980 * 322.99105 * 11 10 9 25 25 H 1.09002 * 110.71751 * 153.86437 * 24 11 10 26 26 N 1.46504 * 110.71935 * 277.13806 * 24 11 10 27 27 C 1.35309 * 125.86437 * 79.97594 * 26 24 11 28 28 C 1.35349 * 106.17179 * 179.97438 * 27 26 24 29 29 N 1.33776 * 106.49642 * 0.02562 * 28 27 26 30 30 N 1.28628 * 108.88646 * 359.73541 * 29 28 27 31 31 C 1.47022 * 125.64666 * 180.02562 * 9 7 2 32 32 H 0.96996 * 120.00418 * 359.97438 * 1 2 3 33 33 H 1.08997 * 110.36855 * 323.00192 * 10 9 7 34 34 H 1.08999 * 110.36490 * 85.21507 * 10 9 7 35 35 H 0.97002 * 120.00223 * 87.19063 * 13 11 10 36 36 H 1.08994 * 117.49592 * 214.97827 * 18 16 14 37 37 H 1.09003 * 117.49709 * 0.02562 * 18 16 14 38 38 H 1.09004 * 109.46457 * 60.00635 * 21 19 16 39 39 H 1.07998 * 126.91562 * 0.02766 * 27 26 24 40 40 H 1.08000 * 126.75648 * 180.02562 * 28 27 26 41 41 H 1.08997 * 109.88723 * 59.48965 * 31 9 7 42 42 H 1.08998 * 109.88661 * 298.31946 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1414 -2.5332 0.0009 11 6 -0.4009 -3.9323 0.6133 12 1 -0.3501 -3.8979 1.7016 13 7 -1.6879 -4.4707 0.1664 14 6 -2.7964 -4.2679 0.9058 15 8 -2.7284 -3.6402 1.9412 16 6 -4.1205 -4.8212 0.4458 17 1 -4.2739 -4.8377 -0.6333 18 6 -4.7332 -5.9596 1.2643 19 6 -5.3416 -4.5577 1.3292 20 1 -5.1872 -3.9837 2.2429 21 6 -6.6847 -4.3368 0.6304 22 9 -7.6780 -4.1119 1.5895 23 9 -6.5934 -3.2261 -0.2151 24 6 0.7787 -4.7525 0.0273 25 1 1.0250 -5.5922 0.6772 26 7 0.4649 -5.2173 -1.3261 27 6 0.5500 -4.4796 -2.4573 28 6 0.1716 -5.2955 -3.4688 29 7 -0.1231 -6.4766 -2.9141 30 7 0.0660 -6.3990 -1.6441 31 6 1.9320 -3.7274 -0.0005 32 1 -0.4850 0.8400 0.0004 33 1 -0.5987 -1.7588 0.6167 34 1 -0.5283 -2.4851 -1.0170 35 1 -1.7424 -4.9730 -0.6616 36 1 -5.2897 -6.7252 0.7237 37 1 -4.1787 -6.3079 2.1357 38 1 -6.9386 -5.2200 0.0440 39 1 0.8586 -3.4477 -2.5371 40 1 0.1181 -5.0428 -4.5174 41 1 2.5590 -3.8505 0.8825 42 1 2.5279 -3.8646 -0.9028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069917191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:11 Heat of formation + Delta-G solvation = 8.793178 kcal Electronic energy + Delta-G solvation = -30438.130815 eV Core-core repulsion = 25899.662993 eV Total energy + Delta-G solvation = -4538.467822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.91599 -47.96693 -44.32243 -41.30830 -39.65160 -37.66582 -35.87308 -34.90628 -33.47835 -31.92427 -30.66811 -29.39421 -28.23959 -26.81784 -25.19939 -23.93531 -23.58768 -22.65884 -22.08007 -21.57389 -21.28571 -19.40039 -19.02766 -18.62151 -18.20109 -17.94568 -17.66112 -16.97457 -16.89125 -16.53943 -16.09136 -15.87828 -15.71033 -15.48751 -14.88558 -14.83573 -14.60990 -14.46252 -14.37015 -14.33230 -13.97557 -13.93188 -13.40448 -13.21364 -13.16757 -12.87385 -12.74935 -12.37333 -12.32638 -12.07263 -12.03766 -11.93692 -11.81780 -11.80648 -11.63895 -11.19954 -11.09638 -10.81102 -10.31018 -10.22243 -9.02199 -7.83138 -5.30295 0.60077 1.23080 1.31186 1.47257 1.48699 1.58035 1.62213 1.85286 2.43577 2.45592 2.77274 3.17076 3.23989 3.29968 3.33393 3.36913 3.48647 3.55626 3.69755 3.72351 3.88707 3.95476 4.13420 4.17260 4.18174 4.27235 4.31102 4.38234 4.64362 4.69069 4.76502 4.78097 4.83003 4.96446 5.07964 5.27310 5.37706 5.46574 5.63527 5.69243 6.17825 6.29595 6.98536 7.05519 7.51198 7.66857 8.24761 9.17864 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.009156 B = 0.003958 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.397928 B = 7072.123753 C = 9096.384781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.059 4.059 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.295 1.295 6 H -0.299 1.299 7 C -0.234 4.234 8 H 0.093 0.907 9 N -0.614 5.614 10 C 0.157 3.843 11 C 0.122 3.878 12 H 0.106 0.894 13 N -0.702 5.702 14 C 0.539 3.461 15 O -0.576 6.576 16 C -0.181 4.181 17 H 0.151 0.849 18 C -0.089 4.089 19 C -0.204 4.204 20 H 0.109 0.891 21 C 0.294 3.706 22 F -0.213 7.213 23 F -0.221 7.221 24 C 0.134 3.866 25 H 0.155 0.845 26 N -0.276 5.276 27 C -0.030 4.030 28 C -0.054 4.054 29 N -0.290 5.290 30 N -0.104 5.104 31 C 0.129 3.871 32 H 0.245 0.755 33 H 0.071 0.929 34 H 0.003 0.997 35 H 0.404 0.596 36 H 0.159 0.841 37 H 0.110 0.890 38 H 0.167 0.833 39 H 0.181 0.819 40 H 0.217 0.783 41 H 0.075 0.925 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.122 -15.277 -2.650 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.222 1.222 6 H -0.227 1.227 7 C -0.362 4.362 8 H 0.111 0.889 9 N -0.342 5.342 10 C 0.031 3.969 11 C 0.014 3.986 12 H 0.124 0.876 13 N -0.352 5.352 14 C 0.327 3.673 15 O -0.455 6.455 16 C -0.202 4.202 17 H 0.168 0.832 18 C -0.126 4.126 19 C -0.224 4.224 20 H 0.127 0.873 21 C 0.242 3.758 22 F -0.194 7.194 23 F -0.202 7.202 24 C 0.031 3.969 25 H 0.172 0.828 26 N -0.070 5.070 27 C -0.182 4.182 28 C -0.210 4.210 29 N -0.156 5.156 30 N -0.083 5.083 31 C 0.002 3.998 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.021 0.979 35 H 0.240 0.760 36 H 0.177 0.823 37 H 0.129 0.871 38 H 0.184 0.816 39 H 0.199 0.801 40 H 0.234 0.766 41 H 0.092 0.908 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.451 -16.012 -1.378 17.714 hybrid contribution 0.708 2.815 -0.558 2.956 sum -6.743 -13.197 -1.936 14.946 Atomic orbital electron populations 1.70039 1.06367 1.24983 1.58160 1.25578 0.96321 1.01001 1.02334 0.85041 0.78466 0.79626 0.76351 1.18475 1.22227 1.22652 1.19443 0.91221 0.82705 1.42824 0.88880 1.44532 1.01566 1.00683 1.87371 1.21956 0.84773 0.93049 0.97157 1.22658 0.81479 0.94265 1.00228 0.87579 1.45574 1.07168 1.55988 1.26494 1.20155 0.85614 0.78516 0.83018 1.90721 1.86563 1.41894 1.26325 1.22205 0.89594 1.07421 1.00967 0.83181 1.23362 0.98958 0.89272 1.01026 1.23311 0.92036 1.04882 1.02156 0.87294 1.21808 0.84382 0.87990 0.81669 1.92967 1.63851 1.95929 1.66643 1.92988 1.96594 1.58625 1.72030 1.23081 0.96224 0.99068 0.78533 0.82794 1.47412 1.42531 1.08400 1.08691 1.23896 1.07147 1.01319 0.85793 1.24027 1.05248 0.89538 1.02211 1.75052 1.18418 1.22696 0.99420 1.78252 1.17931 1.02062 1.10025 1.21821 0.92872 0.83338 1.01724 0.94525 0.91143 0.97914 0.76005 0.82289 0.87149 0.81641 0.80142 0.76608 0.90764 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.63 10.09 21.65 0.22 -54.41 16 2 C -0.06 -3.15 5.49 84.86 0.47 -2.68 16 3 Si 0.98 43.55 29.55 68.60 2.03 45.57 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.30 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 7 C -0.23 -11.68 10.27 84.03 0.86 -10.81 16 8 H 0.09 4.38 7.83 -2.91 -0.02 4.35 16 9 N -0.61 -27.19 3.39 -691.99 -2.35 -29.54 16 10 C 0.16 7.08 5.06 86.86 0.44 7.52 16 11 C 0.12 4.24 3.29 46.39 0.15 4.39 16 12 H 0.11 3.98 7.54 -2.39 -0.02 3.96 16 13 N -0.70 -21.82 5.16 -435.95 -2.25 -24.07 16 14 C 0.54 17.51 7.61 87.66 0.67 18.17 16 15 O -0.58 -24.01 15.90 -3.01 -0.05 -24.06 16 16 C -0.18 -3.98 5.87 -11.54 -0.07 -4.05 16 17 H 0.15 2.67 8.14 -2.39 -0.02 2.65 16 18 C -0.09 -1.25 9.88 30.58 0.30 -0.95 16 19 C -0.20 -4.29 5.40 -10.81 -0.06 -4.35 16 20 H 0.11 3.01 7.67 -2.39 -0.02 2.99 16 21 C 0.29 5.26 5.50 71.98 0.40 5.66 16 22 F -0.21 -4.66 17.34 44.97 0.78 -3.88 16 23 F -0.22 -5.57 17.29 44.97 0.78 -4.79 16 24 C 0.13 3.80 3.97 46.18 0.18 3.99 16 25 H 0.15 3.46 8.14 -2.39 -0.02 3.44 16 26 N -0.28 -7.81 2.23 -321.52 -0.72 -8.52 16 27 C -0.03 -0.87 9.23 83.49 0.77 -0.10 16 28 C -0.05 -1.35 12.05 83.73 1.01 -0.34 16 29 N -0.29 -8.32 12.41 -58.26 -0.72 -9.04 16 30 N -0.10 -2.99 12.59 37.02 0.47 -2.53 16 31 C 0.13 4.21 6.32 86.73 0.55 4.76 16 32 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 33 H 0.07 3.97 5.87 -2.39 -0.01 3.96 16 34 H 0.00 0.14 7.16 -2.39 -0.02 0.13 16 35 H 0.40 11.45 7.04 -92.71 -0.65 10.80 16 36 H 0.16 0.82 8.05 -2.39 -0.02 0.80 16 37 H 0.11 1.66 8.14 -2.39 -0.02 1.65 16 38 H 0.17 1.22 7.90 -2.39 -0.02 1.20 16 39 H 0.18 5.74 7.58 -2.91 -0.02 5.72 16 40 H 0.22 3.88 8.06 -2.91 -0.02 3.86 16 41 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.05 1.62 7.42 -2.39 -0.02 1.60 16 Total: -1.00 -71.39 360.22 4.28 -67.10 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.43 Total: 26.96 kcal Atomic # 6 Polarization: 15.54 SS G_CDS: 5.67 Total: 21.22 kcal Atomic # 7 Polarization: -122.76 SS G_CDS: -5.35 Total: -128.12 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.05 Total: -24.06 kcal Atomic # 9 Polarization: -10.23 SS G_CDS: 1.56 Total: -8.67 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -71.39 4.28 -67.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069917191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.897 kcal (2) G-P(sol) polarization free energy of solvation -71.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds