Wall clock time and date at job start Sat Apr 11 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00162 * 2 1 4 4 H 1.48503 * 109.47450 * 89.99951 * 3 2 1 5 5 H 1.48503 * 109.47360 * 209.99620 * 3 2 1 6 6 H 1.48498 * 109.47360 * 329.99798 * 3 2 1 7 7 C 1.38808 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99929 * 15.17030 * 7 2 1 9 9 N 1.36939 * 120.00203 * 195.17052 * 7 2 1 10 10 C 1.47059 * 136.05734 * 7.45960 * 9 7 2 11 11 C 1.53753 * 87.88943 * 152.96018 * 10 9 7 12 12 N 1.46507 * 114.09020 * 139.78014 * 11 10 9 13 13 C 1.35308 * 125.86215 * 351.55878 * 12 11 10 14 14 C 1.35349 * 106.17331 * 180.02562 * 13 12 11 15 15 C 1.50703 * 126.75542 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.47201 * 95.00093 * 15 14 13 17 17 C 1.34769 * 120.00234 * 180.02562 * 16 15 14 18 18 O 1.21281 * 120.00283 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00321 * 180.02562 * 17 16 15 20 20 H 1.08998 * 112.85465 * 50.32819 * 19 17 16 21 21 C 1.53788 * 113.61271 * 279.13497 * 19 17 16 22 22 C 1.53953 * 87.01848 * 220.04376 * 21 19 17 23 23 C 1.53774 * 87.11147 * 25.36352 * 22 21 19 24 24 F 1.39899 * 113.61598 * 220.08638 * 23 22 21 25 25 F 1.39901 * 113.61732 * 89.18648 * 23 22 21 26 26 N 1.33771 * 106.49555 * 0.02562 * 14 13 12 27 27 N 1.28628 * 108.88718 * 359.73287 * 26 14 13 28 28 C 1.47062 * 136.05593 * 187.82575 * 9 7 2 29 29 H 0.96997 * 120.00431 * 174.91506 * 1 2 3 30 30 H 1.08997 * 113.47135 * 267.69145 * 10 9 7 31 31 H 1.09007 * 113.47198 * 38.13451 * 10 9 7 32 32 H 1.09006 * 114.57802 * 272.65936 * 11 10 9 33 33 H 1.07998 * 126.91909 * 0.02562 * 13 12 11 34 34 H 1.08994 * 109.47865 * 215.00524 * 15 14 13 35 35 H 1.09007 * 109.47122 * 335.00653 * 15 14 13 36 36 H 0.96998 * 119.99761 * 0.02562 * 16 15 14 37 37 H 1.08998 * 113.61200 * 334.56840 * 21 19 17 38 38 H 1.09005 * 113.61461 * 105.46883 * 21 19 17 39 39 H 1.08997 * 113.54019 * 270.81197 * 22 21 19 40 40 H 1.09006 * 113.73743 * 139.94234 * 22 21 19 41 41 H 1.09008 * 113.47329 * 321.86486 * 28 9 7 42 42 H 1.09003 * 113.47086 * 92.30805 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4478 2.6526 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4984 -2.1213 -0.2438 9 7 3.3438 -1.2227 0.3109 10 6 4.3298 -0.2528 0.8107 11 6 5.1048 -1.4365 1.4125 12 7 6.5595 -1.3306 1.2752 13 6 7.2216 -0.4003 0.5492 14 6 8.5390 -0.6715 0.7003 15 6 9.6910 0.0820 0.0870 16 7 10.1860 1.0780 1.0404 17 6 11.2203 1.8749 0.7064 18 8 11.7416 1.7672 -0.3833 19 6 11.7299 2.8990 1.6874 20 1 11.9241 2.4798 2.6746 21 6 10.8947 4.1899 1.7199 22 6 12.2264 4.9532 1.8387 23 6 12.8873 3.7521 1.1421 24 9 14.1347 3.4113 1.6760 25 9 12.9011 3.8515 -0.2533 26 7 8.6173 -1.7408 1.5004 27 7 7.4275 -2.1039 1.8277 28 6 4.4217 -2.2228 0.2849 29 1 -0.4850 -0.8367 -0.0744 30 1 4.8718 0.2629 0.0181 31 1 3.9267 0.4295 1.5592 32 1 4.7865 -1.7244 2.4145 33 1 6.7865 0.3981 -0.0336 34 1 10.4918 -0.6154 -0.1586 35 1 9.3550 0.5835 -0.8207 36 1 9.7694 1.1639 1.9122 37 1 10.3596 4.3872 0.7910 38 1 10.2601 4.2774 2.6019 39 1 12.5557 5.0966 2.8678 40 1 12.2599 5.8711 1.2517 41 1 4.0970 -3.2190 0.5854 42 1 4.9881 -2.2265 -0.6465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094299702.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:06 Heat of formation + Delta-G solvation = 58.107895 kcal Electronic energy + Delta-G solvation = -28997.681555 eV Core-core repulsion = 24461.352179 eV Total energy + Delta-G solvation = -4536.329376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.140 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.06639 -47.38686 -43.34129 -40.26122 -39.02181 -37.57239 -35.45170 -33.66821 -32.36190 -31.55706 -28.55687 -28.23137 -26.30518 -25.73285 -25.44847 -24.31844 -21.90373 -21.65899 -21.21971 -20.36493 -19.96823 -18.51737 -18.00065 -17.76037 -17.28153 -16.89036 -16.42259 -16.32197 -15.67558 -15.49930 -15.45393 -14.93232 -14.76294 -14.23835 -14.10817 -14.08952 -13.69990 -13.61489 -13.55300 -13.41642 -13.11974 -12.54418 -12.49956 -12.39634 -12.32377 -11.93535 -11.78736 -11.70608 -11.56648 -11.17307 -10.96663 -10.93500 -10.68074 -10.20967 -10.03791 -9.75106 -9.51123 -9.39561 -9.31874 -9.05033 -7.58899 -6.59974 -3.57026 1.54453 2.15137 2.21531 2.33617 2.90510 3.12703 3.15448 3.22761 3.25667 3.38292 3.81068 3.87085 3.93776 4.05847 4.23441 4.32192 4.37802 4.46980 4.64773 4.74689 4.86883 4.92686 4.95417 4.98092 5.07314 5.15594 5.18419 5.22700 5.34502 5.51030 5.56220 5.70780 5.77693 5.85127 5.93236 6.00320 6.03544 6.13504 6.62543 6.69625 7.11868 7.84151 7.96143 8.49238 8.66249 9.15989 9.94161 10.89540 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.016156 B = 0.002345 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.690075 B =11937.565126 C =13129.315724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.016 4.016 3 Si 1.058 2.942 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.289 1.289 7 C -0.316 4.316 8 H 0.089 0.911 9 N -0.606 5.606 10 C 0.101 3.899 11 C 0.088 3.912 12 N -0.266 5.266 13 C -0.020 4.020 14 C -0.059 4.059 15 C 0.214 3.786 16 N -0.718 5.718 17 C 0.522 3.478 18 O -0.521 6.521 19 C -0.170 4.170 20 H 0.141 0.859 21 C -0.119 4.119 22 C -0.165 4.165 23 C 0.281 3.719 24 F -0.189 7.189 25 F -0.158 7.158 26 N -0.263 5.263 27 N -0.081 5.081 28 C 0.117 3.883 29 H 0.266 0.734 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.143 0.857 33 H 0.191 0.809 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.404 0.596 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.207 8.969 5.820 24.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.217 4.217 3 Si 0.889 3.111 4 H -0.217 1.217 5 H -0.208 1.208 6 H -0.215 1.215 7 C -0.442 4.442 8 H 0.107 0.893 9 N -0.334 5.334 10 C -0.027 4.027 11 C -0.015 4.015 12 N -0.059 5.059 13 C -0.173 4.173 14 C -0.197 4.197 15 C 0.089 3.911 16 N -0.371 5.371 17 C 0.307 3.693 18 O -0.396 6.396 19 C -0.192 4.192 20 H 0.159 0.841 21 C -0.157 4.157 22 C -0.203 4.203 23 C 0.244 3.756 24 F -0.170 7.170 25 F -0.139 7.139 26 N -0.130 5.130 27 N -0.060 5.060 28 C -0.011 4.011 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.160 0.840 33 H 0.208 0.792 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.238 0.762 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.134 0.866 40 H 0.119 0.881 41 H 0.084 0.916 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 22.281 9.242 5.893 24.831 hybrid contribution -0.273 -0.933 -0.520 1.102 sum 22.008 8.309 5.373 24.130 Atomic orbital electron populations 1.70889 1.05352 1.30020 1.49565 1.25858 0.96499 1.00972 0.98370 0.83832 0.74692 0.75972 0.76634 1.21716 1.20849 1.21548 1.20133 0.79308 0.96474 1.48264 0.89315 1.45921 1.03707 1.07241 1.76535 1.23120 0.89850 0.92902 0.96802 1.24762 0.70152 1.03194 1.03378 1.47722 1.09494 1.18870 1.29783 1.23498 0.92400 0.98877 1.02518 1.21722 0.93720 0.99179 1.05124 1.19321 0.92274 0.88978 0.90526 1.45982 1.34581 1.36842 1.19651 1.19978 0.80112 0.81350 0.87859 1.90813 1.57196 1.68954 1.22592 1.24077 0.96919 0.96408 1.01810 0.84090 1.22825 0.96337 0.91360 1.05189 1.24106 0.95144 0.97820 1.03201 1.21725 0.79653 0.97164 0.77098 1.93025 1.45433 1.93282 1.85241 1.93111 1.96419 1.96416 1.27919 1.75058 1.13874 1.11190 1.12836 1.78321 0.92568 1.16696 1.18463 1.22739 0.88848 0.95507 0.94006 0.92354 0.92490 0.91084 0.83967 0.79227 0.89483 0.89409 0.76178 0.88078 0.88085 0.86608 0.88136 0.91638 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.87 13.70 55.49 0.76 -26.11 16 2 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 1.06 23.53 25.50 -169.99 -4.34 19.19 16 4 H -0.29 -6.07 6.97 56.52 0.39 -5.68 16 5 H -0.28 -5.61 5.66 56.52 0.32 -5.29 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.32 -8.25 11.03 -15.06 -0.17 -8.42 16 8 H 0.09 2.46 8.06 -52.48 -0.42 2.04 16 9 N -0.61 -13.06 3.62 -184.65 -0.67 -13.73 16 10 C 0.10 1.74 4.94 -8.39 -0.04 1.70 16 11 C 0.09 1.31 5.35 -67.68 -0.36 0.95 16 12 N -0.27 -3.78 3.56 -54.44 -0.19 -3.97 16 13 C -0.02 -0.24 10.71 -17.05 -0.18 -0.42 16 14 C -0.06 -0.71 6.62 -82.78 -0.55 -1.26 16 15 C 0.21 2.20 6.23 -5.19 -0.03 2.16 16 16 N -0.72 -6.32 5.55 -61.47 -0.34 -6.66 16 17 C 0.52 5.28 7.30 -10.99 -0.08 5.20 16 18 O -0.52 -7.47 14.77 5.56 0.08 -7.38 16 19 C -0.17 -1.16 4.03 -90.96 -0.37 -1.53 16 20 H 0.14 0.63 8.14 -51.93 -0.42 0.20 16 21 C -0.12 -0.54 7.62 -25.82 -0.20 -0.74 16 22 C -0.16 -0.77 7.87 -25.83 -0.20 -0.97 16 23 C 0.28 2.45 3.01 -25.92 -0.08 2.37 16 24 F -0.19 -1.91 17.41 2.25 0.04 -1.87 16 25 F -0.16 -1.91 15.23 2.25 0.03 -1.88 16 26 N -0.26 -3.90 12.41 33.29 0.41 -3.48 16 27 N -0.08 -1.26 13.17 60.35 0.79 -0.47 16 28 C 0.12 2.02 8.49 -8.52 -0.07 1.95 16 29 H 0.27 7.70 8.73 -40.82 -0.36 7.34 16 30 H 0.06 0.93 5.26 -51.93 -0.27 0.65 16 31 H 0.07 1.25 6.22 -51.93 -0.32 0.92 16 32 H 0.14 2.01 8.14 -51.93 -0.42 1.58 16 33 H 0.19 1.90 6.77 -52.49 -0.36 1.55 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 36 H 0.40 2.82 8.46 -40.82 -0.35 2.47 16 37 H 0.10 0.54 8.09 -51.93 -0.42 0.12 16 38 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 358.23 15.07 5.40 5.40 Total: -1.00 -33.45 358.23 -5.63 -39.08 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.19 Total: 1.41 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -2.43 Total: 0.48 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.76 Total: -54.43 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.08 Total: -7.38 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.07 Total: -3.75 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -4.34 Total: 19.19 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.45 -5.63 -39.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094299702.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.187 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds