Wall clock time and date at job start Sat Apr 11 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00162 * 2 1 4 4 H 1.48503 * 109.47450 * 89.99951 * 3 2 1 5 5 H 1.48503 * 109.47360 * 209.99620 * 3 2 1 6 6 H 1.48498 * 109.47360 * 329.99798 * 3 2 1 7 7 C 1.38808 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99929 * 15.17030 * 7 2 1 9 9 N 1.36939 * 120.00203 * 195.17052 * 7 2 1 10 10 C 1.47059 * 136.05734 * 7.45960 * 9 7 2 11 11 C 1.53753 * 87.88943 * 152.96018 * 10 9 7 12 12 N 1.46507 * 114.09020 * 139.78014 * 11 10 9 13 13 C 1.35308 * 125.86215 * 351.55878 * 12 11 10 14 14 C 1.35349 * 106.17331 * 180.02562 * 13 12 11 15 15 C 1.50703 * 126.75542 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.47201 * 95.00093 * 15 14 13 17 17 C 1.34769 * 120.00234 * 180.02562 * 16 15 14 18 18 O 1.21281 * 120.00283 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00321 * 180.02562 * 17 16 15 20 20 H 1.08998 * 112.85465 * 50.32819 * 19 17 16 21 21 C 1.53788 * 113.61271 * 279.13497 * 19 17 16 22 22 C 1.53953 * 87.01848 * 220.04376 * 21 19 17 23 23 C 1.53774 * 87.11147 * 25.36352 * 22 21 19 24 24 F 1.39899 * 113.61598 * 220.08638 * 23 22 21 25 25 F 1.39901 * 113.61732 * 89.18648 * 23 22 21 26 26 N 1.33771 * 106.49555 * 0.02562 * 14 13 12 27 27 N 1.28628 * 108.88718 * 359.73287 * 26 14 13 28 28 C 1.47062 * 136.05593 * 187.82575 * 9 7 2 29 29 H 0.96997 * 120.00431 * 174.91506 * 1 2 3 30 30 H 1.08997 * 113.47135 * 267.69145 * 10 9 7 31 31 H 1.09007 * 113.47198 * 38.13451 * 10 9 7 32 32 H 1.09006 * 114.57802 * 272.65936 * 11 10 9 33 33 H 1.07998 * 126.91909 * 0.02562 * 13 12 11 34 34 H 1.08994 * 109.47865 * 215.00524 * 15 14 13 35 35 H 1.09007 * 109.47122 * 335.00653 * 15 14 13 36 36 H 0.96998 * 119.99761 * 0.02562 * 16 15 14 37 37 H 1.08998 * 113.61200 * 334.56840 * 21 19 17 38 38 H 1.09005 * 113.61461 * 105.46883 * 21 19 17 39 39 H 1.08997 * 113.54019 * 270.81197 * 22 21 19 40 40 H 1.09006 * 113.73743 * 139.94234 * 22 21 19 41 41 H 1.09008 * 113.47329 * 321.86486 * 28 9 7 42 42 H 1.09003 * 113.47086 * 92.30805 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4478 2.6526 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4984 -2.1213 -0.2438 9 7 3.3438 -1.2227 0.3109 10 6 4.3298 -0.2528 0.8107 11 6 5.1048 -1.4365 1.4125 12 7 6.5595 -1.3306 1.2752 13 6 7.2216 -0.4003 0.5492 14 6 8.5390 -0.6715 0.7003 15 6 9.6910 0.0820 0.0870 16 7 10.1860 1.0780 1.0404 17 6 11.2203 1.8749 0.7064 18 8 11.7416 1.7672 -0.3833 19 6 11.7299 2.8990 1.6874 20 1 11.9241 2.4798 2.6746 21 6 10.8947 4.1899 1.7199 22 6 12.2264 4.9532 1.8387 23 6 12.8873 3.7521 1.1421 24 9 14.1347 3.4113 1.6760 25 9 12.9011 3.8515 -0.2533 26 7 8.6173 -1.7408 1.5004 27 7 7.4275 -2.1039 1.8277 28 6 4.4217 -2.2228 0.2849 29 1 -0.4850 -0.8367 -0.0744 30 1 4.8718 0.2629 0.0181 31 1 3.9267 0.4295 1.5592 32 1 4.7865 -1.7244 2.4145 33 1 6.7865 0.3981 -0.0336 34 1 10.4918 -0.6154 -0.1586 35 1 9.3550 0.5835 -0.8207 36 1 9.7694 1.1639 1.9122 37 1 10.3596 4.3872 0.7910 38 1 10.2601 4.2774 2.6019 39 1 12.5557 5.0966 2.8678 40 1 12.2599 5.8711 1.2517 41 1 4.0970 -3.2190 0.5854 42 1 4.9881 -2.2265 -0.6465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094299702.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:04 Heat of formation + Delta-G solvation = 32.989523 kcal Electronic energy + Delta-G solvation = -28998.770769 eV Core-core repulsion = 24461.352179 eV Total energy + Delta-G solvation = -4537.418590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.140 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -49.75453 -48.10997 -44.41971 -41.00366 -40.42757 -38.11669 -36.35673 -35.13566 -33.99860 -32.54222 -30.01164 -29.12103 -27.34892 -26.80323 -25.93228 -25.75352 -23.18548 -22.57121 -22.10110 -21.40205 -20.95099 -19.62972 -19.22995 -18.74532 -18.20878 -17.73252 -17.43905 -17.11096 -16.94965 -16.41875 -16.29939 -15.93579 -15.83000 -15.40500 -15.26331 -14.97194 -14.70687 -14.62986 -14.36445 -14.32097 -13.88572 -13.86986 -13.77350 -13.61044 -13.36565 -12.80354 -12.70754 -12.54596 -12.40774 -12.26008 -12.13741 -11.95033 -11.69712 -11.55727 -11.47119 -11.03580 -10.93721 -10.89540 -10.30574 -10.19217 -9.41238 -8.69105 -5.58514 0.51524 1.17087 1.21322 1.40082 1.46984 1.54190 1.67098 2.20036 2.52353 2.54278 2.78016 2.78796 2.91344 3.13760 3.24595 3.32225 3.42298 3.44605 3.67200 3.77848 3.87532 3.92440 4.04663 4.36192 4.39048 4.42280 4.43663 4.51467 4.54447 4.54456 4.61104 4.78349 4.79354 4.90202 4.93161 5.01251 5.02762 5.19294 5.27965 5.57270 5.88081 6.42728 6.59773 7.12466 7.21575 7.42044 8.07759 8.82094 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.016156 B = 0.002345 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.690075 B =11937.565126 C =13129.315724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.077 4.077 3 Si 1.095 2.905 4 H -0.266 1.266 5 H -0.241 1.241 6 H -0.305 1.305 7 C -0.300 4.300 8 H 0.052 0.948 9 N -0.639 5.639 10 C 0.099 3.901 11 C 0.117 3.883 12 N -0.270 5.270 13 C -0.012 4.012 14 C -0.048 4.048 15 C 0.217 3.783 16 N -0.706 5.706 17 C 0.520 3.480 18 O -0.570 6.570 19 C -0.165 4.165 20 H 0.169 0.831 21 C -0.108 4.108 22 C -0.148 4.148 23 C 0.248 3.752 24 F -0.203 7.203 25 F -0.186 7.186 26 N -0.280 5.280 27 N -0.105 5.105 28 C 0.115 3.885 29 H 0.249 0.751 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.153 0.847 33 H 0.219 0.781 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.416 0.584 37 H 0.091 0.909 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.186 10.944 7.278 27.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.270 4.270 3 Si 0.918 3.082 4 H -0.192 1.192 5 H -0.165 1.165 6 H -0.233 1.233 7 C -0.427 4.427 8 H 0.070 0.930 9 N -0.368 5.368 10 C -0.027 4.027 11 C 0.014 3.986 12 N -0.062 5.062 13 C -0.165 4.165 14 C -0.187 4.187 15 C 0.092 3.908 16 N -0.359 5.359 17 C 0.306 3.694 18 O -0.448 6.448 19 C -0.186 4.186 20 H 0.187 0.813 21 C -0.145 4.145 22 C -0.185 4.185 23 C 0.211 3.789 24 F -0.184 7.184 25 F -0.166 7.166 26 N -0.147 5.147 27 N -0.084 5.084 28 C -0.012 4.012 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.171 0.829 33 H 0.235 0.765 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.252 0.748 37 H 0.109 0.891 38 H 0.152 0.848 39 H 0.159 0.841 40 H 0.124 0.876 41 H 0.083 0.917 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 24.317 11.172 7.400 27.765 hybrid contribution -0.762 -1.704 -1.006 2.121 sum 23.555 9.468 6.394 26.179 Atomic orbital electron populations 1.71018 1.06935 1.29056 1.53371 1.27286 0.96401 1.04862 0.98486 0.83468 0.75093 0.71432 0.78227 1.19176 1.16511 1.23294 1.19882 0.81844 0.94995 1.46029 0.93000 1.45780 1.03358 1.10303 1.77326 1.23320 0.88865 0.93101 0.97419 1.24150 0.70652 1.00959 1.02799 1.47526 1.08869 1.19456 1.30390 1.23951 0.92232 0.98682 1.01633 1.21890 0.94331 0.98319 1.04179 1.19267 0.91368 0.89057 0.91130 1.45860 1.34189 1.35962 1.19856 1.20562 0.79602 0.81486 0.87745 1.90797 1.58718 1.70435 1.24863 1.24243 0.96438 0.96226 1.01726 0.81315 1.22868 0.96344 0.89122 1.06208 1.24150 0.94021 0.96339 1.04008 1.22600 0.79664 1.00463 0.76138 1.92988 1.46555 1.93665 1.85231 1.93045 1.96524 1.96728 1.30350 1.75048 1.13769 1.12230 1.13652 1.78341 0.92882 1.17566 1.19600 1.22863 0.87841 0.95132 0.95367 0.94204 0.90058 0.90535 0.82934 0.76479 0.90723 0.88341 0.74779 0.89060 0.84801 0.84070 0.87592 0.91734 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.01 13.70 21.65 0.30 -57.71 16 2 C -0.08 -4.21 5.50 84.86 0.47 -3.74 16 3 Si 1.09 45.42 25.50 68.60 1.75 47.17 16 4 H -0.27 -9.94 6.97 99.48 0.69 -9.25 16 5 H -0.24 -8.24 5.66 99.48 0.56 -7.68 16 6 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 7 C -0.30 -15.81 11.03 84.03 0.93 -14.89 16 8 H 0.05 3.02 8.06 -2.91 -0.02 2.99 16 9 N -0.64 -26.38 3.62 -738.11 -2.67 -29.05 16 10 C 0.10 3.03 4.94 83.26 0.41 3.44 16 11 C 0.12 3.13 5.35 45.55 0.24 3.37 16 12 N -0.27 -6.70 3.56 -326.15 -1.16 -7.86 16 13 C -0.01 -0.24 10.71 83.49 0.89 0.65 16 14 C -0.05 -1.02 6.62 41.60 0.28 -0.74 16 15 C 0.22 3.94 6.23 85.63 0.53 4.47 16 16 N -0.71 -10.50 5.55 -466.79 -2.59 -13.09 16 17 C 0.52 9.58 7.30 87.66 0.64 10.22 16 18 O -0.57 -16.15 14.77 -3.03 -0.04 -16.20 16 19 C -0.16 -1.81 4.03 -11.01 -0.04 -1.85 16 20 H 0.17 0.86 8.14 -2.39 -0.02 0.84 16 21 C -0.11 -0.57 7.62 31.18 0.24 -0.33 16 22 C -0.15 -0.90 7.87 31.18 0.25 -0.66 16 23 C 0.25 3.98 3.01 31.12 0.09 4.07 16 24 F -0.20 -3.96 17.41 44.97 0.78 -3.17 16 25 F -0.19 -4.52 15.23 44.97 0.68 -3.83 16 26 N -0.28 -7.63 12.41 -48.60 -0.60 -8.24 16 27 N -0.11 -3.00 13.17 37.02 0.49 -2.51 16 28 C 0.11 3.73 8.49 83.17 0.71 4.43 16 29 H 0.25 15.20 8.73 -92.71 -0.81 14.39 16 30 H 0.08 2.15 5.26 -2.39 -0.01 2.14 16 31 H 0.08 2.33 6.22 -2.38 -0.01 2.31 16 32 H 0.15 3.82 8.14 -2.38 -0.02 3.81 16 33 H 0.22 3.10 6.77 -2.91 -0.02 3.08 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.42 4.29 8.46 -92.71 -0.78 3.51 16 37 H 0.09 0.71 8.09 -2.39 -0.02 0.69 16 38 H 0.13 -0.11 8.14 -2.38 -0.02 -0.13 16 39 H 0.14 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 41 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -77.11 358.23 2.66 -74.44 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.10 Total: 11.62 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 5.63 Total: 8.44 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -6.24 Total: -118.47 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.04 Total: -16.20 kcal Atomic # 9 Polarization: -8.47 SS G_CDS: 1.47 Total: -7.01 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.75 Total: 47.17 kcal Total: -77.11 2.66 -74.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094299702.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.432 kcal (2) G-P(sol) polarization free energy of solvation -77.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds