Wall clock time and date at job start Sat Apr 11 2020 06:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86801 * 119.99990 * 2 1 4 4 H 1.48501 * 109.46843 * 269.99323 * 3 2 1 5 5 H 1.48497 * 109.47291 * 29.99442 * 3 2 1 6 6 H 1.48496 * 109.46830 * 149.99449 * 3 2 1 7 7 C 1.38810 * 119.99581 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00260 * 0.02562 * 7 2 1 9 9 N 1.36934 * 119.99643 * 180.02562 * 7 2 1 10 10 C 1.46508 * 120.00109 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47181 * 180.02562 * 10 9 7 12 12 C 1.35353 * 126.75025 * 95.24959 * 11 10 9 13 13 N 1.35315 * 106.17091 * 180.12656 * 12 11 10 14 14 C 1.46503 * 125.86619 * 179.91044 * 13 12 11 15 15 H 1.08990 * 110.88821 * 157.13797 * 14 13 12 16 16 C 1.55152 * 111.00504 * 33.25043 * 14 13 12 17 17 C 1.54327 * 102.94410 * 206.42780 * 16 14 13 18 18 N 1.47020 * 107.26809 * 22.19499 * 17 16 14 19 19 C 1.34776 * 125.64479 * 181.01970 * 18 17 16 20 20 O 1.21281 * 119.99608 * 180.02562 * 19 18 17 21 21 C 1.50699 * 120.00426 * 0.03093 * 19 18 17 22 22 H 1.09002 * 115.55636 * 325.68296 * 21 19 18 23 23 C 1.52997 * 117.50247 * 111.36997 * 21 19 18 24 24 C 1.53000 * 117.50321 * 179.97438 * 21 19 18 25 25 F 1.39894 * 117.49876 * 145.01885 * 24 21 19 26 26 F 1.39897 * 117.49410 * 359.97438 * 24 21 19 27 27 C 1.47422 * 108.70690 * 1.28772 * 18 17 16 28 28 N 1.28710 * 108.26456 * 359.63402 * 13 12 11 29 29 N 1.28635 * 110.18233 * 0.23694 * 28 13 12 30 30 H 0.96998 * 119.99253 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00527 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.46560 * 60.00209 * 10 9 7 33 33 H 1.08997 * 109.46945 * 300.00471 * 10 9 7 34 34 H 1.07992 * 126.91460 * 0.02562 * 12 11 10 35 35 H 1.09006 * 110.71816 * 88.06886 * 16 14 13 36 36 H 1.09004 * 110.72294 * 324.79546 * 16 14 13 37 37 H 1.08996 * 109.88210 * 262.77742 * 17 16 14 38 38 H 1.08999 * 110.01048 * 141.68718 * 17 16 14 39 39 H 1.08999 * 117.49685 * 0.02562 * 23 21 19 40 40 H 1.08999 * 117.52022 * 214.97066 * 23 21 19 41 41 H 1.08997 * 110.36912 * 94.47953 * 27 18 17 42 42 H 1.08994 * 110.36989 * 216.80459 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 6 5.5937 -2.1956 0.0023 12 6 6.4073 -2.1457 1.0830 13 7 7.6446 -1.8684 0.6107 14 6 8.8573 -1.7156 1.4183 15 1 9.7491 -1.8957 0.8182 16 6 8.8222 -2.6498 2.6566 17 6 9.7227 -1.9134 3.6708 18 7 9.7593 -0.4980 3.2747 19 6 10.4550 0.4740 3.8972 20 8 10.4110 1.6125 3.4814 21 6 11.2877 0.1464 5.1098 22 1 10.8867 -0.6318 5.7593 23 6 12.8085 0.2329 4.9669 24 6 12.0546 1.2932 5.7712 25 9 12.1872 1.2633 7.1635 26 9 11.9295 2.5658 5.2037 27 6 8.9039 -0.3169 2.0878 28 7 7.5741 -1.7677 -0.6706 29 7 6.3645 -1.9575 -1.0648 30 1 -0.4849 0.8401 -0.0004 31 1 3.8647 -0.3622 0.0014 32 1 3.8491 -3.0423 -0.8892 33 1 3.8484 -3.0428 0.8908 34 1 6.1252 -2.2952 2.1146 35 1 9.2358 -3.6285 2.4132 36 1 7.8062 -2.7438 3.0401 37 1 10.7288 -2.3317 3.6452 38 1 9.3079 -2.0069 4.6745 39 1 13.2068 0.5273 3.9960 40 1 13.4084 -0.4879 5.5224 41 1 7.9035 -0.0028 2.3855 42 1 9.3456 0.4132 1.4097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098669570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:26 Heat of formation + Delta-G solvation = 36.849973 kcal Electronic energy + Delta-G solvation = -28911.122049 eV Core-core repulsion = 24373.870861 eV Total energy + Delta-G solvation = -4537.251188 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.18496 -47.82573 -43.26507 -40.81181 -38.53744 -36.22713 -35.32422 -34.23902 -32.06551 -31.18896 -30.39915 -29.63624 -26.38466 -26.00574 -23.75831 -23.33464 -23.05057 -22.44971 -21.06949 -20.80218 -20.06663 -18.90607 -18.10497 -17.53591 -17.40540 -17.10065 -16.57516 -16.28907 -16.01506 -15.56857 -14.97639 -14.86152 -14.53265 -14.44776 -14.42100 -14.16454 -14.06341 -13.93664 -13.74852 -13.38634 -13.13877 -13.10550 -12.82293 -12.65875 -12.39833 -12.13632 -11.92681 -11.76471 -11.53793 -11.14348 -10.87916 -10.84053 -10.63962 -10.50989 -10.17543 -10.04829 -9.59633 -9.42598 -9.09152 -8.90637 -7.24639 -5.76430 -3.12430 1.51956 1.57786 1.76542 2.27614 2.42149 2.63749 2.68696 3.33710 3.40572 3.45587 3.49076 3.49168 3.59523 3.73572 3.95580 3.99527 4.11459 4.18638 4.39444 4.55928 4.61377 4.64576 4.76823 4.80509 4.89765 5.02960 5.04330 5.07809 5.12148 5.20737 5.31652 5.41337 5.52978 5.65346 5.70797 6.18964 6.50618 6.53301 6.63121 6.66182 7.40582 7.97471 8.42242 8.61280 9.19956 9.92645 10.12213 11.41563 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.013849 B = 0.002400 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.346732 B =11665.503400 C =12895.274723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.245 4.245 8 H 0.094 0.906 9 N -0.750 5.750 10 C 0.237 3.763 11 C -0.007 4.007 12 C -0.043 4.043 13 N -0.294 5.294 14 C 0.136 3.864 15 H 0.132 0.868 16 C -0.142 4.142 17 C 0.101 3.899 18 N -0.613 5.613 19 C 0.559 3.441 20 O -0.508 6.508 21 C -0.194 4.194 22 H 0.151 0.849 23 C -0.146 4.146 24 C 0.233 3.767 25 F -0.154 7.154 26 F -0.137 7.137 27 C 0.100 3.900 28 N -0.090 5.090 29 N -0.250 5.250 30 H 0.260 0.740 31 H 0.363 0.637 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.190 0.810 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.085 0.915 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.872 -7.469 14.699 34.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.188 4.188 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.374 4.374 8 H 0.111 0.889 9 N -0.396 5.396 10 C 0.109 3.891 11 C -0.145 4.145 12 C -0.193 4.193 13 N -0.088 5.088 14 C 0.032 3.968 15 H 0.150 0.850 16 C -0.180 4.180 17 C -0.022 4.022 18 N -0.349 5.349 19 C 0.346 3.654 20 O -0.382 6.382 21 C -0.216 4.216 22 H 0.169 0.831 23 C -0.184 4.184 24 C 0.195 3.805 25 F -0.134 7.134 26 F -0.117 7.117 27 C -0.024 4.024 28 N -0.068 5.068 29 N -0.118 5.118 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.207 0.793 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.148 0.852 40 H 0.154 0.846 41 H 0.104 0.896 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 31.436 -6.551 13.227 34.729 hybrid contribution -0.055 1.141 1.297 1.728 sum 31.381 -5.409 14.523 35.000 Atomic orbital electron populations 1.69701 1.05024 1.25871 1.57397 1.24633 0.95199 0.97141 1.01857 0.86565 0.79018 0.85018 0.77988 1.20906 1.21670 1.20633 1.19026 0.80167 0.94894 1.43318 0.88858 1.42655 1.03946 1.01756 1.91235 1.18928 0.80088 0.89938 1.00189 1.22549 0.99023 1.04490 0.88411 1.23340 0.84283 1.09484 1.02197 1.47048 1.08091 1.47017 1.06605 1.22649 0.86047 0.96314 0.91809 0.85048 1.23135 1.02680 0.99236 0.92971 1.22138 1.00894 0.80068 0.99091 1.48150 1.47630 1.08918 1.30184 1.18873 0.79248 0.84079 0.83153 1.90866 1.62819 1.19508 1.65029 1.23585 0.96218 1.02274 0.99556 0.83136 1.24307 0.91786 0.98926 1.03361 1.19432 1.05978 0.79441 0.75631 1.93069 1.96059 1.96537 1.27756 1.93153 1.96075 1.39349 1.83101 1.22598 0.96532 0.96202 0.87083 1.78326 1.16531 1.19926 0.92029 1.75138 0.95773 1.14671 1.26210 0.93002 0.80484 0.93369 0.93592 0.79318 0.87801 0.88413 0.89902 0.89846 0.85204 0.84564 0.89634 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.44 13.97 55.49 0.78 -28.67 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 22.94 27.74 -169.99 -4.71 18.23 16 4 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.28 -6.95 6.52 56.52 0.37 -6.58 16 7 C -0.24 -6.95 10.47 -15.06 -0.16 -7.10 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 9 N -0.75 -18.25 5.40 -61.08 -0.33 -18.58 16 10 C 0.24 4.62 6.82 -5.19 -0.04 4.59 16 11 C -0.01 -0.12 6.61 -82.78 -0.55 -0.67 16 12 C -0.04 -0.55 10.59 -17.04 -0.18 -0.73 16 13 N -0.29 -3.48 3.37 -52.57 -0.18 -3.66 16 14 C 0.14 0.97 4.10 -65.66 -0.27 0.70 16 15 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 16 C -0.14 -0.50 6.37 -24.90 -0.16 -0.66 16 17 C 0.10 0.27 6.28 -3.06 -0.02 0.25 16 18 N -0.61 -4.09 3.32 -170.38 -0.57 -4.65 16 19 C 0.56 4.88 7.63 -10.99 -0.08 4.79 16 20 O -0.51 -6.88 15.40 5.56 0.09 -6.80 16 21 C -0.19 -1.01 5.52 -91.77 -0.51 -1.52 16 22 H 0.15 0.33 7.73 -51.93 -0.40 -0.07 16 23 C -0.15 -0.49 10.20 -26.75 -0.27 -0.77 16 24 C 0.23 1.72 5.19 -26.75 -0.14 1.58 16 25 F -0.15 -1.20 17.60 2.25 0.04 -1.16 16 26 F -0.14 -1.53 15.71 2.25 0.04 -1.50 16 27 C 0.10 0.85 6.60 -2.41 -0.02 0.84 16 28 N -0.09 -1.42 13.16 60.35 0.79 -0.63 16 29 N -0.25 -4.67 12.41 33.29 0.41 -4.26 16 30 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 31 H 0.36 8.96 5.52 -40.82 -0.23 8.74 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.19 1.76 7.01 -52.49 -0.37 1.39 16 35 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.10 0.37 6.38 -51.93 -0.33 0.03 16 37 H 0.08 0.05 8.14 -51.93 -0.42 -0.38 16 38 H 0.08 0.12 8.05 -51.93 -0.42 -0.30 16 39 H 0.13 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.14 0.06 8.14 -51.93 -0.42 -0.37 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.10 0.98 8.03 -51.93 -0.42 0.56 16 LS Contribution 364.95 15.07 5.50 5.50 Total: -1.00 -38.73 364.95 -5.76 -44.49 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -5.13 Total: 0.26 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -2.48 Total: 1.42 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: 0.91 Total: -60.45 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: 0.09 Total: -6.80 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.08 Total: -2.65 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.71 Total: 18.23 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -38.73 -5.76 -44.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098669570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.341 kcal (2) G-P(sol) polarization free energy of solvation -38.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds