Wall clock time and date at job start Sat Apr 11 2020 06:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86801 * 119.99990 * 2 1 4 4 H 1.48501 * 109.46843 * 269.99323 * 3 2 1 5 5 H 1.48497 * 109.47291 * 29.99442 * 3 2 1 6 6 H 1.48496 * 109.46830 * 149.99449 * 3 2 1 7 7 C 1.38810 * 119.99581 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00260 * 0.02562 * 7 2 1 9 9 N 1.36934 * 119.99643 * 180.02562 * 7 2 1 10 10 C 1.46508 * 120.00109 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47181 * 180.02562 * 10 9 7 12 12 C 1.35353 * 126.75025 * 95.24959 * 11 10 9 13 13 N 1.35315 * 106.17091 * 180.12656 * 12 11 10 14 14 C 1.46503 * 125.86619 * 179.91044 * 13 12 11 15 15 H 1.08990 * 110.88821 * 157.13797 * 14 13 12 16 16 C 1.55152 * 111.00504 * 33.25043 * 14 13 12 17 17 C 1.54327 * 102.94410 * 206.42780 * 16 14 13 18 18 N 1.47020 * 107.26809 * 22.19499 * 17 16 14 19 19 C 1.34776 * 125.64479 * 181.01970 * 18 17 16 20 20 O 1.21281 * 119.99608 * 180.02562 * 19 18 17 21 21 C 1.50699 * 120.00426 * 0.03093 * 19 18 17 22 22 H 1.09002 * 115.55636 * 325.68296 * 21 19 18 23 23 C 1.52997 * 117.50247 * 111.36997 * 21 19 18 24 24 C 1.53000 * 117.50321 * 179.97438 * 21 19 18 25 25 F 1.39894 * 117.49876 * 145.01885 * 24 21 19 26 26 F 1.39897 * 117.49410 * 359.97438 * 24 21 19 27 27 C 1.47422 * 108.70690 * 1.28772 * 18 17 16 28 28 N 1.28710 * 108.26456 * 359.63402 * 13 12 11 29 29 N 1.28635 * 110.18233 * 0.23694 * 28 13 12 30 30 H 0.96998 * 119.99253 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00527 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.46560 * 60.00209 * 10 9 7 33 33 H 1.08997 * 109.46945 * 300.00471 * 10 9 7 34 34 H 1.07992 * 126.91460 * 0.02562 * 12 11 10 35 35 H 1.09006 * 110.71816 * 88.06886 * 16 14 13 36 36 H 1.09004 * 110.72294 * 324.79546 * 16 14 13 37 37 H 1.08996 * 109.88210 * 262.77742 * 17 16 14 38 38 H 1.08999 * 110.01048 * 141.68718 * 17 16 14 39 39 H 1.08999 * 117.49685 * 0.02562 * 23 21 19 40 40 H 1.08999 * 117.52022 * 214.97066 * 23 21 19 41 41 H 1.08997 * 110.36912 * 94.47953 * 27 18 17 42 42 H 1.08994 * 110.36989 * 216.80459 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 6 5.5937 -2.1956 0.0023 12 6 6.4073 -2.1457 1.0830 13 7 7.6446 -1.8684 0.6107 14 6 8.8573 -1.7156 1.4183 15 1 9.7491 -1.8957 0.8182 16 6 8.8222 -2.6498 2.6566 17 6 9.7227 -1.9134 3.6708 18 7 9.7593 -0.4980 3.2747 19 6 10.4550 0.4740 3.8972 20 8 10.4110 1.6125 3.4814 21 6 11.2877 0.1464 5.1098 22 1 10.8867 -0.6318 5.7593 23 6 12.8085 0.2329 4.9669 24 6 12.0546 1.2932 5.7712 25 9 12.1872 1.2633 7.1635 26 9 11.9295 2.5658 5.2037 27 6 8.9039 -0.3169 2.0878 28 7 7.5741 -1.7677 -0.6706 29 7 6.3645 -1.9575 -1.0648 30 1 -0.4849 0.8401 -0.0004 31 1 3.8647 -0.3622 0.0014 32 1 3.8491 -3.0423 -0.8892 33 1 3.8484 -3.0428 0.8908 34 1 6.1252 -2.2952 2.1146 35 1 9.2358 -3.6285 2.4132 36 1 7.8062 -2.7438 3.0401 37 1 10.7288 -2.3317 3.6452 38 1 9.3079 -2.0069 4.6745 39 1 13.2068 0.5273 3.9960 40 1 13.4084 -0.4879 5.5224 41 1 7.9035 -0.0028 2.3855 42 1 9.3456 0.4132 1.4097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098669570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:25 Heat of formation + Delta-G solvation = 7.490438 kcal Electronic energy + Delta-G solvation = -28912.395174 eV Core-core repulsion = 24373.870861 eV Total energy + Delta-G solvation = -4538.524313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.72738 -48.41599 -44.36996 -41.39926 -39.14121 -37.02173 -36.70396 -35.31038 -33.85791 -32.12741 -31.77208 -30.22146 -27.96154 -26.69165 -24.45987 -24.32634 -23.83003 -23.50621 -22.31967 -21.67964 -20.56096 -19.95360 -19.40137 -18.44081 -18.00730 -17.72764 -17.41455 -17.05825 -16.68686 -16.57426 -16.17238 -16.11384 -15.68085 -15.44987 -15.05412 -14.98991 -14.77031 -14.69432 -14.52593 -14.40240 -14.23611 -14.07865 -13.93384 -13.46577 -13.36077 -13.12118 -12.93463 -12.90079 -12.62488 -12.36403 -12.16293 -12.02944 -11.85837 -11.83103 -11.35397 -11.16811 -11.04393 -11.00906 -10.30672 -9.93932 -9.33247 -8.04513 -5.37162 0.49335 1.01925 1.06492 1.32051 1.36985 1.38449 1.43650 1.67087 1.99902 2.18152 2.44603 2.88616 3.11974 3.16566 3.22829 3.26464 3.34767 3.49567 3.63337 3.74613 3.80204 3.83337 3.91377 4.08199 4.20684 4.27028 4.42462 4.46980 4.54430 4.56307 4.68482 4.74847 4.80133 4.84013 4.96549 4.99879 5.08484 5.15302 5.60477 5.74495 6.15542 6.19555 6.82102 7.04018 7.44399 7.79436 7.98104 9.16631 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.013849 B = 0.002400 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.346732 B =11665.503400 C =12895.274723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.056 4.056 3 Si 0.946 3.054 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.262 1.262 7 C -0.227 4.227 8 H 0.071 0.929 9 N -0.754 5.754 10 C 0.238 3.762 11 C -0.040 4.040 12 C -0.012 4.012 13 N -0.277 5.277 14 C 0.130 3.870 15 H 0.147 0.853 16 C -0.131 4.131 17 C 0.097 3.903 18 N -0.606 5.606 19 C 0.551 3.449 20 O -0.571 6.571 21 C -0.180 4.180 22 H 0.190 0.810 23 C -0.107 4.107 24 C 0.186 3.814 25 F -0.161 7.161 26 F -0.171 7.171 27 C 0.099 3.901 28 N -0.108 5.108 29 N -0.295 5.295 30 H 0.258 0.742 31 H 0.361 0.639 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.231 0.769 35 H 0.131 0.869 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.178 0.822 41 H 0.068 0.932 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.990 -9.771 17.057 39.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.248 4.248 3 Si 0.774 3.226 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.187 1.187 7 C -0.358 4.358 8 H 0.089 0.911 9 N -0.400 5.400 10 C 0.111 3.889 11 C -0.179 4.179 12 C -0.164 4.164 13 N -0.071 5.071 14 C 0.028 3.972 15 H 0.164 0.836 16 C -0.170 4.170 17 C -0.024 4.024 18 N -0.340 5.340 19 C 0.339 3.661 20 O -0.450 6.450 21 C -0.202 4.202 22 H 0.207 0.793 23 C -0.145 4.145 24 C 0.149 3.851 25 F -0.141 7.141 26 F -0.151 7.151 27 C -0.026 4.026 28 N -0.086 5.086 29 N -0.162 5.162 30 H 0.067 0.933 31 H 0.193 0.807 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.247 0.753 35 H 0.149 0.851 36 H 0.120 0.880 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.147 0.853 40 H 0.196 0.804 41 H 0.086 0.914 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 34.628 -8.927 15.593 39.012 hybrid contribution -0.954 1.749 0.589 2.078 sum 33.674 -7.178 16.181 38.043 Atomic orbital electron populations 1.69847 1.06693 1.26536 1.59823 1.25330 0.95963 1.00544 1.02977 0.85554 0.78444 0.80883 0.77679 1.21412 1.21693 1.18724 1.19062 0.82048 0.93896 1.40784 0.91090 1.42719 1.02627 1.03636 1.91030 1.18952 0.81618 0.87803 1.00539 1.22262 0.98158 1.07624 0.89809 1.23761 0.83658 1.06185 1.02770 1.47378 1.09279 1.44588 1.05828 1.23080 0.84605 0.96591 0.92887 0.83584 1.23253 1.03565 0.99545 0.90621 1.22540 1.03002 0.77076 0.99810 1.48201 1.46196 1.10571 1.29017 1.19547 0.79221 0.83475 0.83808 1.90844 1.65024 1.22205 1.66910 1.23670 0.97032 1.01546 0.97909 0.79273 1.24508 0.90770 0.96576 1.02604 1.20093 1.10252 0.78987 0.75737 1.93043 1.96338 1.96474 1.28256 1.93072 1.96548 1.41864 1.83645 1.22404 0.95807 0.96594 0.87802 1.78228 1.15577 1.20818 0.94002 1.75072 0.96938 1.16276 1.27901 0.93268 0.80687 0.94648 0.91052 0.75312 0.85064 0.88005 0.86454 0.87374 0.85327 0.80429 0.91407 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.08 13.97 21.65 0.30 -62.78 16 2 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16 3 Si 0.95 47.85 27.74 68.60 1.90 49.75 16 4 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 5 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 6 H -0.26 -12.31 6.52 99.48 0.65 -11.66 16 7 C -0.23 -13.00 10.47 84.03 0.88 -12.12 16 8 H 0.07 4.32 8.06 -2.91 -0.02 4.29 16 9 N -0.75 -36.31 5.40 -347.17 -1.87 -38.18 16 10 C 0.24 9.07 6.82 85.63 0.58 9.66 16 11 C -0.04 -1.33 6.61 41.60 0.28 -1.05 16 12 C -0.01 -0.28 10.59 83.49 0.88 0.61 16 13 N -0.28 -5.88 3.37 -320.22 -1.08 -6.96 16 14 C 0.13 1.43 4.10 46.46 0.19 1.62 16 15 H 0.15 1.24 8.14 -2.39 -0.02 1.22 16 16 C -0.13 -0.21 6.37 31.78 0.20 -0.01 16 17 C 0.10 -0.04 6.28 86.73 0.54 0.51 16 18 N -0.61 -6.29 3.32 -811.36 -2.70 -8.99 16 19 C 0.55 8.68 7.63 87.66 0.67 9.35 16 20 O -0.57 -15.92 15.40 -3.03 -0.05 -15.97 16 21 C -0.18 -1.27 5.52 -11.54 -0.06 -1.33 16 22 H 0.19 -0.23 7.73 -2.39 -0.02 -0.25 16 23 C -0.11 -0.33 10.20 30.58 0.31 -0.02 16 24 C 0.19 2.50 5.19 30.58 0.16 2.66 16 25 F -0.16 -2.28 17.60 44.97 0.79 -1.49 16 26 F -0.17 -4.02 15.71 44.97 0.71 -3.32 16 27 C 0.10 1.54 6.60 86.94 0.57 2.11 16 28 N -0.11 -3.31 13.16 37.02 0.49 -2.82 16 29 N -0.29 -10.89 12.41 -48.60 -0.60 -11.49 16 30 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 31 H 0.36 17.49 5.52 -92.71 -0.51 16.97 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.23 3.12 7.01 -2.91 -0.02 3.10 16 35 H 0.13 -0.37 8.14 -2.38 -0.02 -0.39 16 36 H 0.10 0.15 6.38 -2.39 -0.02 0.14 16 37 H 0.12 -0.72 8.14 -2.39 -0.02 -0.74 16 38 H 0.11 -0.43 8.05 -2.39 -0.02 -0.45 16 39 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.18 -0.90 8.14 -2.39 -0.02 -0.92 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 1.48 8.03 -2.39 -0.02 1.46 16 Total: -1.00 -91.61 364.95 4.08 -87.53 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 0.51 Total: 5.64 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 5.68 Total: 9.08 kcal Atomic # 7 Polarization: -125.76 SS G_CDS: -5.46 Total: -131.23 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.05 Total: -15.97 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 1.50 Total: -4.80 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 1.90 Total: 49.75 kcal Total: -91.61 4.08 -87.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098669570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.023 kcal (2) G-P(sol) polarization free energy of solvation -91.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds