Wall clock time and date at job start Sat Apr 11 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99638 * 2 1 4 4 H 1.48497 * 109.46974 * 239.99766 * 3 2 1 5 5 H 1.48502 * 109.47019 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47090 * 119.99848 * 3 2 1 7 7 C 1.38810 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99889 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00291 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99954 * 180.02562 * 9 7 2 11 11 C 1.50709 * 109.46748 * 180.02562 * 10 9 7 12 12 C 1.35348 * 126.75132 * 95.00417 * 11 10 9 13 13 N 1.35310 * 106.17342 * 179.97438 * 12 11 10 14 14 C 1.46500 * 125.86978 * 179.97438 * 13 12 11 15 15 H 1.08998 * 110.64486 * 151.86036 * 14 13 12 16 16 C 1.55161 * 110.86890 * 28.61017 * 14 13 12 17 17 C 1.55137 * 101.48526 * 205.90023 * 16 14 13 18 18 N 1.47423 * 104.71983 * 37.29517 * 17 16 14 19 19 C 1.34777 * 125.64829 * 155.82193 * 18 17 16 20 20 O 1.21283 * 120.00463 * 179.69258 * 19 18 17 21 21 C 1.50700 * 119.99675 * 359.41380 * 19 18 17 22 22 H 1.09000 * 115.55362 * 34.60723 * 21 19 18 23 23 C 1.53005 * 117.49752 * 248.90055 * 21 19 18 24 24 C 1.53000 * 59.99996 * 252.50802 * 23 21 19 25 25 F 1.39899 * 117.50331 * 252.51181 * 24 23 21 26 26 F 1.39902 * 117.51629 * 107.47807 * 24 23 21 27 27 C 1.47019 * 108.70731 * 335.55081 * 18 17 16 28 28 N 1.28719 * 108.26680 * 0.26262 * 13 12 11 29 29 N 1.28638 * 110.17154 * 359.55880 * 28 13 12 30 30 H 0.97005 * 120.00592 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00184 * 0.02562 * 9 7 2 32 32 H 1.08995 * 109.47256 * 60.00160 * 10 9 7 33 33 H 1.08997 * 109.46759 * 299.99972 * 10 9 7 34 34 H 1.07998 * 126.91171 * 359.97438 * 12 11 10 35 35 H 1.08994 * 111.00643 * 324.13803 * 16 14 13 36 36 H 1.08997 * 111.00606 * 87.95706 * 16 14 13 37 37 H 1.09007 * 110.49426 * 278.45664 * 17 16 14 38 38 H 1.08993 * 110.34231 * 156.05913 * 17 16 14 39 39 H 1.08994 * 117.50050 * 359.97438 * 23 21 19 40 40 H 1.09004 * 117.49949 * 145.02287 * 23 21 19 41 41 H 1.09003 * 109.88210 * 120.70469 * 27 18 17 42 42 H 1.08996 * 109.88947 * 241.87267 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0027 11 6 1.0788 -4.8022 0.0031 12 6 0.6249 -5.4800 -1.0769 13 7 -0.2296 -6.4159 -0.6028 14 6 -0.9692 -7.3901 -1.4091 15 1 -1.1715 -8.2922 -0.8318 16 6 -0.1953 -7.7325 -2.7096 17 6 -1.3500 -8.1631 -3.6519 18 7 -2.4646 -7.2585 -3.3162 19 6 -3.4853 -6.9326 -4.1337 20 8 -4.3543 -6.1794 -3.7484 21 6 -3.5436 -7.4993 -5.5289 22 1 -3.1635 -8.5148 -5.6401 23 6 -3.3266 -6.5317 -6.6941 24 6 -4.7240 -7.0864 -6.4105 25 9 -5.2325 -8.0409 -7.2978 26 9 -5.6669 -6.2120 -5.8594 27 6 -2.2818 -6.7757 -1.9396 28 7 -0.2856 -6.2993 0.6779 29 7 0.4877 -5.3495 1.0710 30 1 -0.4851 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0016 32 1 2.6848 -3.7137 0.8927 33 1 2.6848 -3.7152 -0.8872 34 1 0.8911 -5.3082 -2.1094 35 1 0.3239 -6.8562 -3.0975 36 1 0.5005 -8.5553 -2.5450 37 1 -1.6316 -9.1989 -3.4619 38 1 -1.0571 -8.0337 -4.6937 39 1 -3.1421 -5.4852 -6.4515 40 1 -2.8034 -6.9105 -7.5721 41 1 -2.2105 -5.6880 -1.9346 42 1 -3.1186 -7.0972 -1.3197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098669571.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:28 Heat of formation + Delta-G solvation = 34.049013 kcal Electronic energy + Delta-G solvation = -28990.530856 eV Core-core repulsion = 24453.158209 eV Total energy + Delta-G solvation = -4537.372647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.09136 -47.72526 -43.11758 -40.68595 -38.42109 -36.10861 -35.10626 -34.08809 -31.98860 -31.02711 -30.03725 -29.47105 -26.09112 -25.79494 -23.66882 -23.28977 -22.94888 -22.75451 -20.92731 -20.62859 -19.94749 -18.78783 -17.84004 -17.42771 -17.13216 -16.97460 -16.49921 -16.19684 -15.84479 -15.45066 -14.95002 -14.81955 -14.55816 -14.36059 -14.12150 -14.02891 -13.85191 -13.67434 -13.60414 -13.23331 -13.09940 -12.99419 -12.78245 -12.59771 -12.35640 -12.00847 -11.80724 -11.59320 -11.28515 -10.90122 -10.79251 -10.72635 -10.49924 -10.39086 -10.12802 -9.94422 -9.73581 -9.29487 -8.92084 -8.86389 -6.91991 -5.72912 -3.03227 1.64350 1.71570 1.94853 2.35768 2.51418 2.77610 2.85506 3.46164 3.46611 3.50978 3.52501 3.59517 3.60822 3.84902 4.05765 4.14777 4.20437 4.30385 4.49482 4.62873 4.69744 4.77097 4.80697 4.93357 5.02763 5.10878 5.16911 5.20352 5.25909 5.34434 5.45591 5.53431 5.62159 5.78736 6.16489 6.35497 6.61447 6.67836 6.75260 6.78058 7.53945 7.70793 8.43847 8.76711 9.55520 10.10869 10.46589 11.49590 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.011362 B = 0.002496 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.717649 B =11215.361884 C =12914.991671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.726 5.726 10 C 0.232 3.768 11 C -0.001 4.001 12 C -0.043 4.043 13 N -0.295 5.295 14 C 0.138 3.862 15 H 0.130 0.870 16 C -0.142 4.142 17 C 0.100 3.900 18 N -0.613 5.613 19 C 0.558 3.442 20 O -0.507 6.507 21 C -0.194 4.194 22 H 0.150 0.850 23 C -0.146 4.146 24 C 0.232 3.768 25 F -0.155 7.155 26 F -0.136 7.136 27 C 0.100 3.900 28 N -0.092 5.092 29 N -0.250 5.250 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.187 0.813 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.087 0.913 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.514 -24.488 -16.533 29.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.371 5.371 10 C 0.103 3.897 11 C -0.139 4.139 12 C -0.193 4.193 13 N -0.090 5.090 14 C 0.035 3.965 15 H 0.148 0.852 16 C -0.181 4.181 17 C -0.023 4.023 18 N -0.349 5.349 19 C 0.344 3.656 20 O -0.380 6.380 21 C -0.216 4.216 22 H 0.168 0.832 23 C -0.184 4.184 24 C 0.194 3.806 25 F -0.136 7.136 26 F -0.116 7.116 27 C -0.024 4.024 28 N -0.070 5.070 29 N -0.117 5.117 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.204 0.796 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.105 0.895 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.619 -24.470 -15.058 29.101 hybrid contribution 0.312 1.090 -1.056 1.549 sum -4.308 -23.380 -16.114 28.720 Atomic orbital electron populations 1.69670 1.05177 1.25835 1.57240 1.24768 0.95512 0.97737 1.02820 0.86237 0.78469 0.83414 0.77850 1.21245 1.21719 1.21159 1.19168 0.91041 0.83802 1.43306 0.90935 1.42297 1.05977 0.99225 1.89568 1.18957 0.90032 0.81393 0.99295 1.22489 1.02536 1.00504 0.88332 1.23271 0.99081 0.94895 1.02023 1.47096 1.30575 1.24650 1.06630 1.22474 0.91110 0.90998 0.91954 0.85179 1.23320 0.97680 1.04436 0.92682 1.22479 0.85169 0.94216 1.00460 1.48189 1.24588 1.47992 1.14161 1.18883 0.80809 0.81140 0.84731 1.90876 1.37220 1.34643 1.75269 1.23577 1.02655 1.03445 0.91929 0.83240 1.24338 0.94233 1.01615 0.98218 1.19452 0.82298 0.86641 0.92175 1.93061 1.88984 1.63564 1.67948 1.93158 1.66377 1.67316 1.84771 1.22276 0.96649 1.01072 0.82422 1.78307 1.19393 1.17197 0.92117 1.75119 1.06276 1.04086 1.26248 0.93404 0.78094 0.94273 0.94506 0.79582 0.88431 0.87713 0.89931 0.89003 0.85018 0.84555 0.89513 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.94 13.06 55.49 0.72 -28.22 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.97 5.59 -61.08 -0.34 -19.31 16 10 C 0.23 4.80 6.82 -5.19 -0.04 4.77 16 11 C 0.00 -0.02 6.61 -82.78 -0.55 -0.57 16 12 C -0.04 -0.60 10.60 -17.05 -0.18 -0.79 16 13 N -0.30 -3.82 3.30 -52.98 -0.17 -3.99 16 14 C 0.14 1.09 4.00 -66.09 -0.26 0.82 16 15 H 0.13 0.80 8.14 -51.93 -0.42 0.37 16 16 C -0.14 -0.61 6.45 -24.46 -0.16 -0.76 16 17 C 0.10 0.32 6.49 -2.41 -0.02 0.31 16 18 N -0.61 -4.70 3.32 -170.38 -0.57 -5.27 16 19 C 0.56 5.51 7.63 -10.98 -0.08 5.43 16 20 O -0.51 -7.58 15.47 5.55 0.09 -7.50 16 21 C -0.19 -1.19 5.24 -91.77 -0.48 -1.67 16 22 H 0.15 0.40 7.77 -51.93 -0.40 0.00 16 23 C -0.15 -0.73 10.20 -26.73 -0.27 -1.00 16 24 C 0.23 1.94 5.19 -26.73 -0.14 1.80 16 25 F -0.16 -1.30 17.60 2.25 0.04 -1.26 16 26 F -0.14 -1.68 15.71 2.25 0.04 -1.65 16 27 C 0.10 0.95 6.62 -3.06 -0.02 0.93 16 28 N -0.09 -1.56 13.17 60.35 0.79 -0.76 16 29 N -0.25 -4.98 12.41 33.29 0.41 -4.57 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.39 10.94 7.66 -40.82 -0.31 10.63 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.19 2.01 6.85 -52.49 -0.36 1.65 16 35 H 0.10 0.47 6.29 -51.93 -0.33 0.15 16 36 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.08 0.11 8.14 -51.92 -0.42 -0.31 16 38 H 0.09 0.12 7.65 -51.93 -0.40 -0.28 16 39 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.14 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.09 1.11 8.03 -51.93 -0.42 0.70 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 367.40 15.07 5.54 5.54 Total: -1.00 -38.56 367.40 -6.07 -44.63 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -5.14 Total: 2.97 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -2.44 Total: 1.83 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: 0.85 Total: -62.12 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.09 Total: -7.50 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.08 Total: -2.90 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.56 -6.07 -44.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098669571.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.676 kcal (2) G-P(sol) polarization free energy of solvation -38.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds