Wall clock time and date at job start Sat Apr 11 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 120.00100 * 2 1 4 4 H 1.48502 * 109.47063 * 270.00271 * 3 2 1 5 5 H 1.48497 * 109.47067 * 29.99998 * 3 2 1 6 6 H 1.48493 * 109.47012 * 149.99769 * 3 2 1 7 7 C 1.38946 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00105 * 359.97438 * 7 2 1 9 9 N 1.37101 * 119.99951 * 180.02562 * 7 2 1 10 10 C 1.34774 * 120.00158 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99804 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00213 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47361 * 179.97438 * 12 10 9 14 14 C 1.48555 * 111.00308 * 169.99798 * 13 12 10 15 15 C 1.54381 * 104.59831 * 200.95770 * 14 13 12 16 16 H 1.08995 * 117.60622 * 242.75181 * 15 14 13 17 17 C 1.54265 * 105.05818 * 23.85357 * 15 14 13 18 18 H 1.08989 * 121.78444 * 222.12718 * 17 15 14 19 19 C 1.48560 * 110.99899 * 54.57628 * 13 12 10 20 20 C 1.52999 * 118.12566 * 87.22928 * 15 14 13 21 21 H 1.09008 * 117.44522 * 15.93460 * 20 15 14 22 22 N 1.46499 * 117.44597 * 160.68801 * 20 15 14 23 23 C 1.34777 * 120.00199 * 205.00251 * 22 20 15 24 24 O 1.21283 * 119.99750 * 359.97438 * 23 22 20 25 25 C 1.50702 * 119.99928 * 180.27479 * 23 22 20 26 26 F 1.39902 * 110.75224 * 56.73890 * 25 23 22 27 27 C 1.55297 * 110.84645 * 180.43940 * 25 23 22 28 28 C 1.54941 * 100.94364 * 152.32312 * 27 25 23 29 29 O 1.43649 * 105.13632 * 323.55244 * 28 27 25 30 30 C 1.43238 * 109.96632 * 24.42645 * 29 28 27 31 31 H 0.97004 * 120.00251 * 0.02562 * 1 2 3 32 32 H 0.96998 * 119.99675 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47204 * 59.99572 * 12 10 9 34 34 H 1.08997 * 109.46639 * 299.99992 * 12 10 9 35 35 H 1.09004 * 110.40937 * 82.17967 * 14 13 12 36 36 H 1.09002 * 110.41291 * 319.74113 * 14 13 12 37 37 H 1.08995 * 110.41198 * 277.81991 * 19 13 12 38 38 H 1.08996 * 110.41207 * 40.14993 * 19 13 12 39 39 H 0.97000 * 119.99484 * 24.99348 * 22 20 15 40 40 H 1.09007 * 111.12334 * 270.23859 * 27 25 23 41 41 H 1.08997 * 111.13188 * 34.39952 * 27 25 23 42 42 H 1.09003 * 110.31131 * 204.63976 * 28 27 25 43 43 H 1.09001 * 110.31165 * 82.46707 * 28 27 25 44 44 H 1.09000 * 109.82785 * 238.77152 * 30 29 28 45 45 H 1.08999 * 109.82764 * 117.80622 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4472 -3.4210 0.0000 12 6 5.5607 -2.3706 0.0012 13 7 6.0504 -3.7555 0.0015 14 6 7.5157 -3.8022 -0.2382 15 6 7.7822 -5.2375 -0.7405 16 1 8.4243 -5.8744 -0.1322 17 6 6.4369 -5.7133 -1.3266 18 1 6.0576 -6.7197 -1.1500 19 6 5.4708 -4.5254 -1.1291 20 6 7.6485 -5.5136 -2.2394 21 1 7.6356 -4.6539 -2.9094 22 7 8.3024 -6.7142 -2.7658 23 6 8.6641 -6.7708 -4.0629 24 8 8.4477 -5.8279 -4.7945 25 6 9.3312 -8.0083 -4.6059 26 9 8.5325 -9.1367 -4.3912 27 6 9.6646 -7.8402 -6.1133 28 6 10.8878 -8.7812 -6.2507 29 8 11.6130 -8.6359 -5.0192 30 6 10.7297 -8.1979 -3.9802 31 1 -0.4851 0.8401 -0.0004 32 1 3.8648 -0.3633 0.0004 33 1 5.9234 -1.8571 0.8916 34 1 5.9247 -1.8564 -0.8883 35 1 8.0586 -3.6169 0.6887 36 1 7.8000 -3.0745 -0.9983 37 1 4.4741 -4.8846 -0.8731 38 1 5.4331 -3.9103 -2.0281 39 1 8.4752 -7.4684 -2.1808 40 1 8.8376 -8.1771 -6.7385 41 1 9.9340 -6.8095 -6.3436 42 1 11.5079 -8.4751 -7.0933 43 1 10.5593 -9.8128 -6.3768 44 1 11.0825 -7.2519 -3.5694 45 1 10.6836 -8.9500 -3.1926 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114731418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:55 Heat of formation + Delta-G solvation = -101.433047 kcal Electronic energy + Delta-G solvation = -29370.305847 eV Core-core repulsion = 24918.225810 eV Total energy + Delta-G solvation = -4452.080036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.58027 -40.80296 -39.96056 -38.97115 -38.14231 -35.40794 -34.01775 -32.98657 -32.28992 -31.69867 -30.03644 -28.36137 -27.81312 -25.05370 -24.20114 -23.23823 -22.14949 -21.21992 -20.66871 -20.40013 -19.40669 -18.61185 -18.22177 -17.69112 -17.22678 -16.56579 -15.95394 -15.89677 -15.47006 -15.39892 -15.22264 -15.09925 -14.82901 -14.78760 -14.27373 -13.81533 -13.69303 -13.64669 -13.32568 -13.01590 -12.85175 -12.57357 -12.49349 -12.35916 -12.18497 -12.10871 -11.93272 -11.60293 -11.46433 -11.41085 -11.13556 -10.99460 -10.61508 -10.45373 -10.23525 -10.18559 -10.00223 -9.58924 -9.17503 -8.57272 -8.24136 -8.12018 -6.33970 -3.85613 1.75236 2.21822 3.00771 3.01555 3.04976 3.13482 3.23368 3.44961 3.61166 3.68083 3.84778 4.00813 4.07996 4.10329 4.29938 4.39652 4.49387 4.53586 4.65796 4.80230 4.87177 4.98879 5.02245 5.09164 5.16742 5.18193 5.21571 5.39781 5.40000 5.51425 5.55621 5.61615 5.73818 5.84160 5.93071 5.93901 6.14158 6.17068 6.51637 6.81010 6.98584 7.07427 7.47278 7.54577 8.11116 8.56001 8.91677 9.38700 9.78178 10.78903 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025221 B = 0.001905 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.914228 B =14692.933069 C =14870.464975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.587 5.587 10 C 0.450 3.550 11 O -0.563 6.563 12 C 0.031 3.969 13 N -0.486 5.486 14 C 0.060 3.940 15 C -0.167 4.167 16 H 0.120 0.880 17 C -0.158 4.158 18 H 0.120 0.880 19 C 0.064 3.936 20 C 0.096 3.904 21 H 0.136 0.864 22 N -0.686 5.686 23 C 0.516 3.484 24 O -0.509 6.509 25 C 0.068 3.932 26 F -0.178 7.178 27 C -0.159 4.159 28 C 0.049 3.951 29 O -0.371 6.371 30 C 0.041 3.959 31 H 0.274 0.726 32 H 0.371 0.629 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.124 0.876 38 H 0.042 0.958 39 H 0.406 0.594 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.847 -14.132 -8.185 29.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.434 4.434 8 H 0.138 0.862 9 N -0.226 5.226 10 C 0.236 3.764 11 O -0.445 6.445 12 C -0.101 4.101 13 N -0.211 5.211 14 C -0.068 4.068 15 C -0.187 4.187 16 H 0.138 0.862 17 C -0.178 4.178 18 H 0.138 0.862 19 C -0.063 4.063 20 C -0.009 4.009 21 H 0.153 0.847 22 N -0.335 5.335 23 C 0.298 3.702 24 O -0.383 6.383 25 C 0.046 3.954 26 F -0.158 7.158 27 C -0.197 4.197 28 C -0.027 4.027 29 O -0.290 6.290 30 C -0.037 4.037 31 H 0.084 0.916 32 H 0.203 0.797 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.142 0.858 38 H 0.060 0.940 39 H 0.241 0.759 40 H 0.123 0.877 41 H 0.131 0.869 42 H 0.118 0.882 43 H 0.089 0.911 44 H 0.111 0.889 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 24.096 -14.304 -8.161 29.186 hybrid contribution 0.494 1.327 -0.321 1.452 sum 24.591 -12.977 -8.482 29.070 Atomic orbital electron populations 1.69620 1.05644 1.27556 1.49106 1.25048 0.95509 0.98019 0.97571 0.86673 0.79817 0.84029 0.78898 1.19625 1.20118 1.19450 1.19427 0.79140 0.96659 1.48165 0.86211 1.42189 1.07587 1.06102 1.66751 1.19574 0.88022 0.84607 0.84200 1.90492 1.69437 1.30581 1.54017 1.22139 0.95591 0.90410 1.01950 1.65415 1.02481 1.10873 1.42283 1.22703 0.90483 0.93392 1.00265 1.23824 1.01733 0.98896 0.94200 0.86163 1.24138 0.89816 1.01315 1.02580 0.86174 1.22887 0.99793 0.91997 0.91642 1.21924 0.97645 0.89484 0.91885 0.84665 1.45246 1.59681 1.18490 1.10063 1.20219 0.79071 0.88482 0.82381 1.90780 1.52916 1.37395 1.57202 1.22680 0.91271 0.82176 0.99286 1.92969 1.75112 1.51868 1.95848 1.23764 1.00148 1.03831 0.91994 1.23538 0.92370 0.99176 0.87619 1.88468 1.33358 1.88655 1.18531 1.23730 0.85934 1.02230 0.91781 0.91566 0.79650 0.88779 0.93032 0.89277 0.93561 0.85778 0.93997 0.75864 0.87677 0.86866 0.88238 0.91087 0.88888 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.55 13.96 55.50 0.77 -24.77 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.23 27.74 -169.99 -4.71 14.51 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 7 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 N -0.59 -13.81 5.09 -10.96 -0.06 -13.87 16 10 C 0.45 10.02 7.50 -10.98 -0.08 9.94 16 11 O -0.56 -14.53 13.24 5.55 0.07 -14.45 16 12 C 0.03 0.51 5.55 -4.98 -0.03 0.48 16 13 N -0.49 -7.57 5.33 -231.41 -1.23 -8.80 16 14 C 0.06 0.68 6.30 -2.18 -0.01 0.67 16 15 C -0.17 -1.66 7.05 -89.23 -0.63 -2.29 16 16 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 17 C -0.16 -1.91 7.05 -89.23 -0.63 -2.54 16 18 H 0.12 1.36 8.14 -51.94 -0.42 0.94 16 19 C 0.06 1.02 5.12 -2.18 -0.01 1.01 16 20 C 0.10 1.02 5.97 -67.93 -0.41 0.61 16 21 H 0.14 1.67 7.40 -51.92 -0.38 1.28 16 22 N -0.69 -5.89 5.56 -53.80 -0.30 -6.19 16 23 C 0.52 5.14 6.77 -10.98 -0.07 5.06 16 24 O -0.51 -6.81 15.27 5.55 0.08 -6.73 16 25 C 0.07 0.53 1.45 -89.83 -0.13 0.40 16 26 F -0.18 -1.54 16.97 2.25 0.04 -1.50 16 27 C -0.16 -1.10 6.09 -24.49 -0.15 -1.25 16 28 C 0.05 0.29 7.78 38.18 0.30 0.59 16 29 O -0.37 -2.97 11.36 -35.23 -0.40 -3.37 16 30 C 0.04 0.26 7.21 37.88 0.27 0.54 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.05 0.75 7.88 -51.93 -0.41 0.34 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.51 7.82 -51.93 -0.41 0.10 16 37 H 0.12 2.41 6.05 -51.93 -0.31 2.10 16 38 H 0.04 0.69 7.99 -51.93 -0.42 0.27 16 39 H 0.41 2.44 8.83 -40.82 -0.36 2.08 16 40 H 0.10 0.66 8.14 -51.92 -0.42 0.23 16 41 H 0.11 0.84 7.38 -51.93 -0.38 0.46 16 42 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 0.54 7.81 -51.93 -0.41 0.13 16 45 H 0.09 0.46 8.11 -51.93 -0.42 0.04 16 LS Contribution 372.46 15.07 5.61 5.61 Total: -1.00 -34.12 372.46 -8.20 -42.32 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -6.25 Total: 11.68 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -1.83 Total: 5.56 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.82 Total: -53.63 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.24 Total: -24.55 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.51 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.12 -8.20 -42.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114731418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.117 kcal (2) G-P(sol) polarization free energy of solvation -34.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds