Wall clock time and date at job start Sat Apr 11 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 120.00100 * 2 1 4 4 H 1.48502 * 109.47063 * 270.00271 * 3 2 1 5 5 H 1.48497 * 109.47067 * 29.99998 * 3 2 1 6 6 H 1.48493 * 109.47012 * 149.99769 * 3 2 1 7 7 C 1.38946 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00105 * 359.97438 * 7 2 1 9 9 N 1.37101 * 119.99951 * 180.02562 * 7 2 1 10 10 C 1.34774 * 120.00158 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99804 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00213 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47361 * 179.97438 * 12 10 9 14 14 C 1.48555 * 111.00308 * 169.99798 * 13 12 10 15 15 C 1.54381 * 104.59831 * 200.95770 * 14 13 12 16 16 H 1.08995 * 117.60622 * 242.75181 * 15 14 13 17 17 C 1.54265 * 105.05818 * 23.85357 * 15 14 13 18 18 H 1.08989 * 121.78444 * 222.12718 * 17 15 14 19 19 C 1.48560 * 110.99899 * 54.57628 * 13 12 10 20 20 C 1.52999 * 118.12566 * 87.22928 * 15 14 13 21 21 H 1.09008 * 117.44522 * 15.93460 * 20 15 14 22 22 N 1.46499 * 117.44597 * 160.68801 * 20 15 14 23 23 C 1.34777 * 120.00199 * 205.00251 * 22 20 15 24 24 O 1.21283 * 119.99750 * 359.97438 * 23 22 20 25 25 C 1.50702 * 119.99928 * 180.27479 * 23 22 20 26 26 F 1.39902 * 110.75224 * 56.73890 * 25 23 22 27 27 C 1.55297 * 110.84645 * 180.43940 * 25 23 22 28 28 C 1.54941 * 100.94364 * 152.32312 * 27 25 23 29 29 O 1.43649 * 105.13632 * 323.55244 * 28 27 25 30 30 C 1.43238 * 109.96632 * 24.42645 * 29 28 27 31 31 H 0.97004 * 120.00251 * 0.02562 * 1 2 3 32 32 H 0.96998 * 119.99675 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47204 * 59.99572 * 12 10 9 34 34 H 1.08997 * 109.46639 * 299.99992 * 12 10 9 35 35 H 1.09004 * 110.40937 * 82.17967 * 14 13 12 36 36 H 1.09002 * 110.41291 * 319.74113 * 14 13 12 37 37 H 1.08995 * 110.41198 * 277.81991 * 19 13 12 38 38 H 1.08996 * 110.41207 * 40.14993 * 19 13 12 39 39 H 0.97000 * 119.99484 * 24.99348 * 22 20 15 40 40 H 1.09007 * 111.12334 * 270.23859 * 27 25 23 41 41 H 1.08997 * 111.13188 * 34.39952 * 27 25 23 42 42 H 1.09003 * 110.31131 * 204.63976 * 28 27 25 43 43 H 1.09001 * 110.31165 * 82.46707 * 28 27 25 44 44 H 1.09000 * 109.82785 * 238.77152 * 30 29 28 45 45 H 1.08999 * 109.82764 * 117.80622 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4472 -3.4210 0.0000 12 6 5.5607 -2.3706 0.0012 13 7 6.0504 -3.7555 0.0015 14 6 7.5157 -3.8022 -0.2382 15 6 7.7822 -5.2375 -0.7405 16 1 8.4243 -5.8744 -0.1322 17 6 6.4369 -5.7133 -1.3266 18 1 6.0576 -6.7197 -1.1500 19 6 5.4708 -4.5254 -1.1291 20 6 7.6485 -5.5136 -2.2394 21 1 7.6356 -4.6539 -2.9094 22 7 8.3024 -6.7142 -2.7658 23 6 8.6641 -6.7708 -4.0629 24 8 8.4477 -5.8279 -4.7945 25 6 9.3312 -8.0083 -4.6059 26 9 8.5325 -9.1367 -4.3912 27 6 9.6646 -7.8402 -6.1133 28 6 10.8878 -8.7812 -6.2507 29 8 11.6130 -8.6359 -5.0192 30 6 10.7297 -8.1979 -3.9802 31 1 -0.4851 0.8401 -0.0004 32 1 3.8648 -0.3633 0.0004 33 1 5.9234 -1.8571 0.8916 34 1 5.9247 -1.8564 -0.8883 35 1 8.0586 -3.6169 0.6887 36 1 7.8000 -3.0745 -0.9983 37 1 4.4741 -4.8846 -0.8731 38 1 5.4331 -3.9103 -2.0281 39 1 8.4752 -7.4684 -2.1808 40 1 8.8376 -8.1771 -6.7385 41 1 9.9340 -6.8095 -6.3436 42 1 11.5079 -8.4751 -7.0933 43 1 10.5593 -9.8128 -6.3768 44 1 11.0825 -7.2519 -3.5694 45 1 10.6836 -8.9500 -3.1926 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114731418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:54 Heat of formation + Delta-G solvation = -130.378223 kcal Electronic energy + Delta-G solvation = -29371.561004 eV Core-core repulsion = 24918.225810 eV Total energy + Delta-G solvation = -4453.335193 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.22806 -41.70059 -40.91907 -39.99023 -39.43722 -36.55145 -35.86875 -34.01892 -33.72977 -32.90489 -30.59321 -29.41341 -29.19624 -26.57011 -25.20791 -23.89724 -23.14381 -22.12576 -21.52745 -21.37682 -21.22393 -20.14040 -19.28917 -18.32008 -18.01891 -17.66105 -17.21842 -16.84723 -16.47858 -16.40240 -16.34578 -16.02996 -15.89272 -15.76983 -15.33095 -14.99572 -14.91567 -14.87514 -14.43993 -14.20785 -14.15512 -13.80651 -13.52899 -13.37644 -13.24181 -13.01496 -12.87480 -12.68017 -12.57587 -12.47565 -12.38771 -12.10200 -12.03025 -11.97528 -11.50874 -11.27255 -11.10686 -10.72380 -10.33211 -10.25716 -9.99352 -9.41890 -8.42875 -6.03832 0.97178 1.29011 1.34128 1.43272 1.46963 1.91827 2.21565 2.48853 2.52016 2.64012 2.72201 3.03942 3.12942 3.14737 3.31222 3.54663 3.57490 3.63206 3.77259 3.80161 4.02855 4.09131 4.17302 4.21645 4.34136 4.43232 4.45392 4.51974 4.53564 4.59507 4.65213 4.71988 4.74385 4.89194 4.93850 5.06877 5.19096 5.26880 5.51007 5.69815 5.76993 5.86981 6.00622 6.10170 6.57173 6.75415 6.86370 7.36832 7.93713 8.74593 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025221 B = 0.001905 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.914228 B =14692.933069 C =14870.464975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.964 3.036 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.230 1.230 7 C -0.327 4.327 8 H 0.056 0.944 9 N -0.590 5.590 10 C 0.448 3.552 11 O -0.606 6.606 12 C 0.042 3.958 13 N -0.505 5.505 14 C 0.057 3.943 15 C -0.137 4.137 16 H 0.153 0.847 17 C -0.175 4.175 18 H 0.125 0.875 19 C 0.065 3.935 20 C 0.105 3.895 21 H 0.118 0.882 22 N -0.673 5.673 23 C 0.515 3.485 24 O -0.548 6.548 25 C 0.070 3.930 26 F -0.182 7.182 27 C -0.161 4.161 28 C 0.050 3.950 29 O -0.389 6.389 30 C 0.043 3.957 31 H 0.279 0.721 32 H 0.390 0.610 33 H 0.127 0.873 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.027 0.973 39 H 0.422 0.578 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.079 0.921 44 H 0.101 0.899 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.256 -13.334 -7.701 33.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.215 4.215 3 Si 0.784 3.216 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.153 1.153 7 C -0.457 4.457 8 H 0.074 0.926 9 N -0.231 5.231 10 C 0.235 3.765 11 O -0.490 6.490 12 C -0.090 4.090 13 N -0.229 5.229 14 C -0.070 4.070 15 C -0.157 4.157 16 H 0.171 0.829 17 C -0.196 4.196 18 H 0.143 0.857 19 C -0.062 4.062 20 C -0.002 4.002 21 H 0.136 0.864 22 N -0.322 5.322 23 C 0.299 3.701 24 O -0.425 6.425 25 C 0.048 3.952 26 F -0.163 7.163 27 C -0.199 4.199 28 C -0.025 4.025 29 O -0.308 6.308 30 C -0.034 4.034 31 H 0.089 0.911 32 H 0.225 0.775 33 H 0.145 0.855 34 H 0.097 0.903 35 H 0.133 0.867 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.045 0.955 39 H 0.259 0.741 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.134 0.866 43 H 0.098 0.902 44 H 0.119 0.881 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 28.547 -13.549 -7.654 32.513 hybrid contribution -0.955 0.924 -0.494 1.418 sum 27.592 -12.625 -8.148 31.418 Atomic orbital electron populations 1.69804 1.08129 1.29259 1.50222 1.26128 0.96496 1.02763 0.96083 0.85371 0.79592 0.76737 0.79875 1.18317 1.19947 1.15284 1.18989 0.81407 0.94925 1.50330 0.92628 1.42018 1.05861 1.07534 1.67716 1.20845 0.90812 0.83435 0.81363 1.90503 1.71346 1.32268 1.54914 1.22098 0.90303 0.91872 1.04691 1.65403 1.05138 1.10197 1.42205 1.22859 0.87612 0.94473 1.02029 1.23952 0.99646 0.98395 0.93672 0.82926 1.23923 0.90189 1.00050 1.05416 0.85708 1.22593 0.98934 0.93492 0.91219 1.21673 0.96642 0.89662 0.92195 0.86385 1.45137 1.58695 1.18409 1.09994 1.20609 0.78506 0.88682 0.82314 1.90766 1.54550 1.38960 1.58178 1.22671 0.91630 0.80902 0.99957 1.92963 1.75436 1.51949 1.95917 1.23790 1.00855 1.03765 0.91538 1.23657 0.91989 0.99367 0.87532 1.88442 1.34192 1.88859 1.19347 1.23821 0.84512 1.03298 0.91748 0.91135 0.77483 0.85548 0.90306 0.86697 0.92440 0.90451 0.95477 0.74052 0.87376 0.87631 0.86610 0.90241 0.88095 0.87070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.55 13.96 21.66 0.30 -56.25 16 2 C -0.02 -0.89 5.50 84.93 0.47 -0.43 16 3 Si 0.96 38.86 27.74 68.60 1.90 40.76 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 6 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 7 C -0.33 -19.24 10.16 84.04 0.85 -18.38 16 8 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 9 N -0.59 -27.86 5.09 -306.98 -1.56 -29.43 16 10 C 0.45 20.21 7.50 87.66 0.66 20.87 16 11 O -0.61 -33.18 13.24 -3.07 -0.04 -33.22 16 12 C 0.04 1.27 5.55 85.56 0.47 1.75 16 13 N -0.50 -14.90 5.33 -886.06 -4.73 -19.63 16 14 C 0.06 1.10 6.30 86.45 0.54 1.64 16 15 C -0.14 -2.28 7.05 -9.90 -0.07 -2.35 16 16 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 17 C -0.18 -4.10 7.05 -9.89 -0.07 -4.17 16 18 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 19 C 0.07 2.14 5.12 86.45 0.44 2.59 16 20 C 0.10 2.03 5.97 44.99 0.27 2.30 16 21 H 0.12 2.80 7.40 -2.38 -0.02 2.79 16 22 N -0.67 -10.22 5.56 -442.52 -2.46 -12.68 16 23 C 0.51 9.65 6.77 87.66 0.59 10.24 16 24 O -0.55 -14.52 15.27 -3.04 -0.05 -14.56 16 25 C 0.07 0.99 1.45 -10.28 -0.01 0.97 16 26 F -0.18 -2.87 16.97 44.97 0.76 -2.11 16 27 C -0.16 -2.06 6.09 32.05 0.20 -1.87 16 28 C 0.05 0.50 7.78 72.65 0.56 1.07 16 29 O -0.39 -5.41 11.36 -148.98 -1.69 -7.10 16 30 C 0.04 0.46 7.21 72.45 0.52 0.98 16 31 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 32 H 0.39 15.20 5.76 -92.71 -0.53 14.67 16 33 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 34 H 0.08 2.03 7.88 -2.39 -0.02 2.01 16 35 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 1.02 7.82 -2.39 -0.02 1.00 16 37 H 0.08 3.26 6.05 -2.39 -0.01 3.24 16 38 H 0.03 0.93 7.99 -2.39 -0.02 0.91 16 39 H 0.42 3.88 8.83 -92.71 -0.82 3.06 16 40 H 0.11 1.27 8.14 -2.38 -0.02 1.26 16 41 H 0.11 1.52 7.38 -2.39 -0.02 1.51 16 42 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.10 0.91 7.81 -2.39 -0.02 0.89 16 45 H 0.11 0.77 8.11 -2.39 -0.02 0.75 16 Total: -1.00 -81.94 372.46 -2.49 -84.44 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: -0.36 Total: 34.57 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 5.43 Total: 15.22 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -8.45 Total: -117.99 kcal Atomic # 8 Polarization: -53.11 SS G_CDS: -1.78 Total: -54.89 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.76 Total: -2.11 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 1.90 Total: 40.76 kcal Total: -81.94 -2.49 -84.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114731418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.942 kcal (2) G-P(sol) polarization free energy of solvation -81.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds