Wall clock time and date at job start Sat Apr 11 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36767 * 125.80389 * 2 1 4 4 C 1.47265 * 126.94065 * 0.02562 * 3 2 1 5 5 O 1.21626 * 120.00361 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99868 * 180.02562 * 4 3 2 7 7 C 1.46504 * 119.99948 * 179.97438 * 6 4 3 8 8 C 1.50703 * 109.47128 * 179.97438 * 7 6 4 9 9 O 1.21292 * 119.99795 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00014 * 179.97438 * 8 7 6 11 11 C 1.37094 * 119.99954 * 180.02562 * 10 8 7 12 12 H 1.08007 * 119.99935 * 0.02562 * 11 10 8 13 13 C 1.38952 * 120.00033 * 180.02562 * 11 10 8 14 14 N 1.31412 * 119.99890 * 180.02562 * 13 11 10 15 15 Si 1.86793 * 119.99880 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47108 * 90.00136 * 15 13 11 17 17 H 1.48500 * 109.47390 * 209.99777 * 15 13 11 18 18 H 1.48499 * 109.47272 * 329.99842 * 15 13 11 19 19 C 1.46681 * 106.11553 * 180.02562 * 3 2 1 20 20 C 1.34481 * 106.33338 * 359.77140 * 19 3 2 21 21 N 1.34654 * 125.79833 * 180.02562 * 2 1 3 22 22 C 1.46499 * 124.85321 * 359.96101 * 21 2 1 23 23 C 1.50697 * 109.47104 * 275.70651 * 22 21 2 24 24 C 1.38243 * 120.00008 * 95.66656 * 23 22 21 25 25 C 1.38232 * 119.99933 * 180.02562 * 24 23 22 26 26 C 1.38231 * 120.00227 * 359.94861 * 25 24 23 27 27 C 1.38242 * 120.00080 * 0.28243 * 26 25 24 28 28 C 1.38234 * 119.99582 * 359.53162 * 27 26 25 29 29 H 1.09004 * 109.47009 * 274.99278 * 1 2 3 30 30 H 1.09001 * 109.46761 * 34.98673 * 1 2 3 31 31 H 1.08987 * 109.47398 * 154.98921 * 1 2 3 32 32 H 0.97002 * 120.00161 * 359.97438 * 6 4 3 33 33 H 1.08993 * 109.47230 * 300.00133 * 7 6 4 34 34 H 1.08998 * 109.46812 * 60.00026 * 7 6 4 35 35 H 0.96995 * 119.99952 * 0.02562 * 10 8 7 36 36 H 0.96995 * 119.99604 * 179.97438 * 14 13 11 37 37 H 1.08003 * 126.83393 * 179.97438 * 19 3 2 38 38 H 1.07998 * 125.57404 * 180.21298 * 20 19 3 39 39 H 1.09000 * 109.47515 * 155.70990 * 22 21 2 40 40 H 1.09003 * 109.47193 * 35.70602 * 22 21 2 41 41 H 1.07997 * 120.00274 * 359.97438 * 24 23 22 42 42 H 1.08005 * 119.99804 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.00517 * 180.02562 * 26 25 24 44 44 H 1.07998 * 120.00233 * 179.72002 * 27 26 25 45 45 H 1.08000 * 119.99838 * 180.21167 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3072 1.1092 0.0000 4 6 1.8703 2.5156 0.0005 5 8 0.6840 2.7840 0.0006 6 7 2.7851 3.5054 -0.0001 7 6 2.3506 4.9045 -0.0001 8 6 3.5585 5.8056 -0.0002 9 8 4.6727 5.3263 -0.0007 10 7 3.4006 7.1441 -0.0008 11 6 4.4994 7.9639 -0.0014 12 1 5.4916 7.5371 -0.0018 13 6 4.3367 9.3439 -0.0014 14 7 5.3900 10.1297 -0.0025 15 14 2.6208 10.0819 0.0001 16 1 2.1674 10.2778 1.4006 17 1 2.6445 11.3913 -0.7001 18 1 1.6863 9.1636 -0.6990 19 6 3.6882 0.6150 -0.0006 20 6 3.6095 -0.7275 0.0042 21 7 2.2947 -1.0922 -0.0005 22 6 1.8093 -2.4744 -0.0003 23 6 1.5104 -2.9016 1.4136 24 6 0.2214 -2.8113 1.9051 25 6 -0.0527 -3.2026 3.2022 26 6 0.9618 -3.6854 4.0075 27 6 2.2517 -3.7713 3.5177 28 6 2.5251 -3.3835 2.2193 29 1 -0.3633 0.0894 1.0238 30 1 -0.3633 0.8420 -0.5893 31 1 -0.3633 -0.9312 -0.4344 32 1 3.7312 3.2914 -0.0005 33 1 1.7517 5.0989 -0.8898 34 1 1.7525 5.0991 0.8901 35 1 2.5096 7.5274 -0.0007 36 1 5.2764 11.0929 -0.0029 37 1 4.5891 1.2108 -0.0012 38 1 4.4497 -1.4061 0.0084 39 1 2.5725 -3.1276 -0.4235 40 1 0.9012 -2.5407 -0.5996 41 1 -0.5712 -2.4341 1.2760 42 1 -1.0596 -3.1317 3.5863 43 1 0.7477 -3.9916 5.0209 44 1 3.0452 -4.1442 4.1483 45 1 3.5321 -3.4538 1.8354 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128705047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:59 Heat of formation + Delta-G solvation = -19.748508 kcal Electronic energy + Delta-G solvation = -27949.000632 eV Core-core repulsion = 23931.231928 eV Total energy + Delta-G solvation = -4017.768704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.42457 -40.79375 -40.03699 -39.55961 -36.27369 -35.27131 -34.73775 -33.83144 -32.60241 -31.74234 -31.50599 -29.63231 -27.40186 -26.96369 -26.00496 -23.64270 -23.20174 -22.39488 -21.48680 -20.98385 -20.65291 -19.83125 -18.55846 -17.88062 -17.49807 -17.12890 -16.77270 -16.62880 -16.52744 -16.34919 -16.01678 -15.66880 -15.27265 -15.10029 -14.87143 -14.56835 -14.30855 -14.21546 -14.08578 -13.99344 -13.87928 -13.61923 -13.54252 -13.44228 -13.24394 -13.01501 -12.95878 -12.47577 -12.44725 -12.04804 -11.99877 -11.87223 -11.58339 -10.93848 -10.65470 -10.33231 -10.14554 -9.84607 -9.83578 -9.51084 -9.07252 -8.45462 -6.07317 0.26303 0.47678 0.76998 1.31177 1.34003 1.43967 1.52548 1.79010 1.87131 2.20451 2.29955 2.58795 2.89615 2.93969 3.10593 3.68316 3.71450 3.86056 3.94727 4.06569 4.10319 4.11893 4.21296 4.26377 4.34179 4.43459 4.44038 4.48258 4.59878 4.67567 4.72054 4.76340 4.99427 5.02803 5.09685 5.12087 5.25978 5.37601 5.50347 5.51900 5.55817 5.60050 5.80991 5.88178 6.06198 6.13007 6.36877 6.49086 6.65749 6.78225 7.25679 7.34320 7.78375 8.71049 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021797 B = 0.001946 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.250424 B =14386.523635 C =14602.215482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.110 3.890 3 C -0.272 4.272 4 C 0.588 3.412 5 O -0.585 6.585 6 N -0.711 5.711 7 C 0.120 3.880 8 C 0.445 3.555 9 O -0.614 6.614 10 N -0.578 5.578 11 C -0.331 4.331 12 H 0.063 0.937 13 C -0.009 4.009 14 N -0.925 5.925 15 Si 0.960 3.040 16 H -0.256 1.256 17 H -0.272 1.272 18 H -0.234 1.234 19 C -0.189 4.189 20 C -0.002 4.002 21 N -0.428 5.428 22 C 0.138 3.862 23 C -0.124 4.124 24 C -0.111 4.111 25 C -0.134 4.134 26 C -0.122 4.122 27 C -0.135 4.135 28 C -0.108 4.108 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.410 0.590 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.392 0.608 36 H 0.281 0.719 37 H 0.143 0.857 38 H 0.201 0.799 39 H 0.128 0.872 40 H 0.115 0.885 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.807 -32.459 3.041 35.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.008 4.008 3 C -0.282 4.282 4 C 0.379 3.621 5 O -0.468 6.468 6 N -0.364 5.364 7 C -0.007 4.007 8 C 0.233 3.767 9 O -0.500 6.500 10 N -0.218 5.218 11 C -0.460 4.460 12 H 0.081 0.919 13 C -0.209 4.209 14 N -0.565 5.565 15 Si 0.779 3.221 16 H -0.181 1.181 17 H -0.197 1.197 18 H -0.157 1.157 19 C -0.212 4.212 20 C -0.127 4.127 21 N -0.104 5.104 22 C 0.019 3.981 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.152 4.152 26 C -0.141 4.141 27 C -0.153 4.153 28 C -0.126 4.126 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.247 0.753 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.228 0.772 36 H 0.091 0.909 37 H 0.161 0.839 38 H 0.218 0.782 39 H 0.146 0.854 40 H 0.133 0.867 41 H 0.153 0.847 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.155 0.845 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.853 -32.694 3.013 35.635 hybrid contribution 0.312 1.198 0.179 1.251 sum -13.542 -31.496 3.192 34.432 Atomic orbital electron populations 1.20527 0.86291 1.03997 1.03456 1.20418 0.94400 0.85270 1.00738 1.20094 0.94949 0.91026 1.22155 1.17706 0.84659 0.84939 0.74799 1.90672 1.17380 1.85111 1.53619 1.45532 1.11132 1.04503 1.75222 1.20850 0.93879 0.81093 1.04905 1.20512 0.90815 0.83122 0.82270 1.90519 1.27940 1.75213 1.56322 1.41921 1.08282 1.05230 1.66348 1.19035 0.87585 0.88639 1.50765 0.91901 1.26080 1.03476 0.95613 0.95727 1.69781 1.32157 1.05285 1.49293 0.85432 0.77343 0.79181 0.80095 1.18050 1.19662 1.15690 1.22202 0.95265 0.94944 1.08825 1.22120 0.86284 0.95687 1.08644 1.43862 1.05546 1.05899 1.55048 1.21071 1.03823 0.79036 0.94197 1.20091 0.94380 1.01616 0.96429 1.21372 0.96563 0.98617 0.96378 1.21456 1.00381 0.99104 0.94271 1.21538 0.93260 0.98614 1.00646 1.21457 0.97497 1.00268 0.96040 1.21305 0.99366 0.97741 0.94228 0.90528 0.90468 0.88976 0.75267 0.87956 0.87993 0.77221 0.90903 0.83916 0.78222 0.85364 0.86728 0.84654 0.84482 0.84536 0.84525 0.84587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.64 9.10 71.24 0.65 -0.99 16 2 C 0.11 2.54 6.88 41.78 0.29 2.83 16 3 C -0.27 -7.99 6.29 -19.04 -0.12 -8.11 16 4 C 0.59 20.49 7.81 86.62 0.68 21.17 16 5 O -0.58 -22.16 14.93 -4.11 -0.06 -22.22 16 6 N -0.71 -25.55 5.52 -470.25 -2.60 -28.15 16 7 C 0.12 4.37 6.15 85.63 0.53 4.90 16 8 C 0.45 20.63 7.85 87.66 0.69 21.32 16 9 O -0.61 -33.36 15.24 -3.07 -0.05 -33.41 16 10 N -0.58 -27.70 5.09 -306.98 -1.56 -29.26 16 11 C -0.33 -19.32 10.16 84.04 0.85 -18.47 16 12 H 0.06 4.31 7.39 -2.91 -0.02 4.29 16 13 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 14 N -0.93 -55.23 13.96 21.66 0.30 -54.93 16 15 Si 0.96 39.05 27.74 68.60 1.90 40.95 16 16 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 17 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 18 H -0.23 -8.19 6.52 99.48 0.65 -7.54 16 19 C -0.19 -4.71 10.56 23.62 0.25 -4.46 16 20 C 0.00 -0.03 11.32 83.11 0.94 0.91 16 21 N -0.43 -7.17 2.67 -513.97 -1.37 -8.54 16 22 C 0.14 1.26 5.83 85.63 0.50 1.76 16 23 C -0.12 -1.45 5.46 -19.86 -0.11 -1.56 16 24 C -0.11 -1.33 9.68 22.27 0.22 -1.11 16 25 C -0.13 -1.61 10.05 22.27 0.22 -1.39 16 26 C -0.12 -1.46 10.05 22.27 0.22 -1.23 16 27 C -0.13 -1.60 10.05 22.27 0.22 -1.38 16 28 C -0.11 -1.26 9.72 22.27 0.22 -1.04 16 29 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.08 1.85 6.75 -2.39 -0.02 1.83 16 31 H 0.09 1.06 6.53 -2.39 -0.02 1.05 16 32 H 0.41 15.09 6.56 -92.71 -0.61 14.48 16 33 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 34 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 35 H 0.39 15.82 5.76 -92.71 -0.53 15.29 16 36 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 37 H 0.14 3.55 7.70 -2.91 -0.02 3.53 16 38 H 0.20 1.97 8.06 -2.91 -0.02 1.95 16 39 H 0.13 0.53 8.09 -2.39 -0.02 0.51 16 40 H 0.11 0.69 6.93 -2.39 -0.02 0.67 16 41 H 0.14 1.19 7.33 -2.91 -0.02 1.17 16 42 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 43 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 44 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 45 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -80.56 384.40 3.12 -77.44 By element: Atomic # 1 Polarization: 45.15 SS G_CDS: -0.16 Total: 44.99 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 6.71 Total: 13.11 kcal Atomic # 7 Polarization: -115.65 SS G_CDS: -5.23 Total: -120.88 kcal Atomic # 8 Polarization: -55.52 SS G_CDS: -0.11 Total: -55.63 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 1.90 Total: 40.95 kcal Total: -80.56 3.12 -77.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128705047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.696 kcal (2) G-P(sol) polarization free energy of solvation -80.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds