Wall clock time and date at job start Sat Apr 11 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86801 * 119.99844 * 2 1 4 4 H 1.48498 * 109.46851 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46803 * 299.99993 * 3 2 1 6 6 H 1.48492 * 109.47108 * 60.00114 * 3 2 1 7 7 C 1.38657 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99651 * 180.02562 * 7 2 1 9 9 O 1.34828 * 119.99967 * 359.97438 * 7 2 1 10 10 C 1.35755 * 117.00073 * 185.06162 * 9 7 2 11 11 C 1.38880 * 120.06296 * 354.46330 * 10 9 7 12 12 C 1.38106 * 119.92623 * 179.97438 * 11 10 9 13 13 C 1.38301 * 120.06678 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.93096 * 179.97438 * 13 12 11 15 15 N 1.46902 * 109.47008 * 90.00309 * 14 13 12 16 16 C 1.48561 * 110.99838 * 69.87419 * 15 14 13 17 17 C 1.54382 * 104.59430 * 200.95952 * 16 15 14 18 18 C 1.54256 * 105.06065 * 23.85489 * 17 16 15 19 19 H 1.09001 * 110.32784 * 241.00314 * 18 17 16 20 20 O 1.42898 * 110.32484 * 118.89297 * 18 17 16 21 21 C 1.35459 * 116.99843 * 91.45384 * 20 18 17 22 22 N 1.32316 * 119.19464 * 180.02562 * 21 20 18 23 23 C 1.32303 * 120.75776 * 180.02562 * 22 21 20 24 24 C 1.38592 * 119.17819 * 359.97438 * 23 22 21 25 25 C 1.38596 * 118.51489 * 0.28519 * 24 23 22 26 26 N 1.32293 * 119.17986 * 359.41240 * 25 24 23 27 27 C 1.48557 * 110.99872 * 314.45830 * 15 14 13 28 28 C 1.38299 * 120.14103 * 0.28404 * 13 12 11 29 29 C 1.38099 * 120.07030 * 359.48143 * 28 13 12 30 30 H 0.97002 * 120.00438 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.03660 * 0.02562 * 11 10 9 32 32 H 1.07992 * 119.96434 * 180.02562 * 12 11 10 33 33 H 1.09004 * 109.46676 * 330.01141 * 14 13 12 34 34 H 1.08995 * 109.47486 * 210.00690 * 14 13 12 35 35 H 1.09001 * 110.40686 * 82.18309 * 16 15 14 36 36 H 1.09002 * 110.41281 * 319.74154 * 16 15 14 37 37 H 1.08999 * 110.32197 * 264.95828 * 17 16 15 38 38 H 1.09001 * 110.32281 * 142.75027 * 17 16 15 39 39 H 1.08004 * 120.41073 * 180.02562 * 23 22 21 40 40 H 1.07993 * 120.73937 * 180.02562 * 24 23 22 41 41 H 1.08000 * 120.40876 * 179.72560 * 25 24 23 42 42 H 1.09006 * 110.41694 * 40.26186 * 27 15 14 43 43 H 1.09004 * 110.41606 * 277.81631 * 27 15 14 44 44 H 1.08001 * 119.96667 * 179.72379 * 28 13 12 45 45 H 1.07998 * 120.04205 * 180.25726 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8907 2.3964 -1.2126 6 1 1.8908 2.3964 1.2124 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2007 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5047 0.1056 11 6 3.4573 -3.4394 0.0922 12 6 4.2025 -4.5970 0.2009 13 6 3.5688 -5.8202 0.3236 14 6 4.3851 -7.0815 0.4415 15 7 4.6583 -7.3573 1.8583 16 6 3.4199 -7.7667 2.5694 17 6 3.7193 -7.4957 4.0595 18 6 4.8215 -6.4164 4.0570 19 1 5.7217 -6.7934 4.5424 20 8 4.3609 -5.2351 4.7161 21 6 4.6066 -5.1367 6.0446 22 7 4.1987 -4.0611 6.6984 23 6 4.4226 -3.9326 7.9960 24 6 5.0925 -4.9419 8.6693 25 6 5.5102 -6.0517 7.9519 26 7 5.2481 -6.1188 6.6569 27 6 5.0953 -6.1262 2.5656 28 6 2.1876 -5.8889 0.3320 29 6 1.4367 -4.7345 0.2285 30 1 -0.4851 0.8400 0.0004 31 1 3.9526 -2.4844 -0.0023 32 1 5.2813 -4.5470 0.1910 33 1 5.3271 -6.9558 -0.0924 34 1 3.8309 -7.9147 0.0095 35 1 3.2217 -8.8263 2.4081 36 1 2.5738 -7.1657 2.2362 37 1 4.0791 -8.4031 4.5445 38 1 2.8270 -7.1243 4.5635 39 1 4.0867 -3.0525 8.5243 40 1 5.2884 -4.8634 9.7284 41 1 6.0388 -6.8542 8.4449 42 1 4.5114 -5.2683 2.2319 43 1 6.1585 -5.9504 2.4016 44 1 1.6956 -6.8460 0.4234 45 1 0.3581 -4.7883 0.2392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137122942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:05 Heat of formation + Delta-G solvation = 39.434586 kcal Electronic energy + Delta-G solvation = -29152.337064 eV Core-core repulsion = 25137.134732 eV Total energy + Delta-G solvation = -4015.202332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -41.38413 -39.95604 -38.85587 -37.68826 -36.04133 -34.00075 -32.58978 -31.99976 -31.27395 -30.35190 -28.72489 -28.47259 -25.69779 -25.05481 -24.47603 -23.98946 -22.13711 -21.39738 -20.91297 -20.10222 -18.88635 -17.99835 -17.83573 -16.95946 -16.48171 -16.16717 -15.71488 -15.50620 -14.96057 -14.77466 -14.53450 -14.38027 -14.16935 -13.77212 -13.59164 -13.54434 -13.38794 -13.23251 -12.99504 -12.72906 -12.25930 -11.92917 -11.69201 -11.50322 -11.33570 -11.24363 -11.21722 -11.16133 -10.95998 -10.82542 -10.77662 -10.64933 -10.55219 -10.41415 -9.34627 -9.34316 -9.17455 -8.83090 -8.40815 -8.17263 -7.20436 -6.45407 -4.03897 0.79800 0.84513 2.17652 2.23168 2.43340 3.12778 3.14943 3.20284 3.57957 3.78387 3.97071 4.16232 4.35206 4.48469 4.51183 4.61056 4.66459 4.85455 4.87851 5.02339 5.08889 5.24879 5.32952 5.33197 5.41821 5.46580 5.51143 5.67395 5.71987 5.77556 5.81978 5.84449 5.96809 6.02330 6.07425 6.10429 6.19545 6.35615 6.57912 6.66263 6.77912 6.88132 6.98155 7.07184 7.10278 7.23083 7.34267 7.42682 7.79122 7.93237 7.99558 9.00338 9.69382 10.72548 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008881 B = 0.003448 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3152.161125 B = 8119.314200 C =10494.896441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.391 4.391 8 H 0.093 0.907 9 O -0.176 6.176 10 C 0.159 3.841 11 C -0.232 4.232 12 C -0.058 4.058 13 C -0.225 4.225 14 C 0.098 3.902 15 N -0.498 5.498 16 C 0.024 3.976 17 C -0.136 4.136 18 C 0.092 3.908 19 H 0.099 0.901 20 O -0.275 6.275 21 C 0.507 3.493 22 N -0.523 5.523 23 C 0.189 3.811 24 C -0.278 4.278 25 C 0.185 3.815 26 N -0.568 5.568 27 C 0.022 3.978 28 C -0.064 4.064 29 C -0.193 4.193 30 H 0.270 0.730 31 H 0.127 0.873 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.176 0.824 40 H 0.149 0.851 41 H 0.170 0.830 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.109 0.891 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.358 -13.806 13.997 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.079 6.079 10 C 0.105 3.895 11 C -0.252 4.252 12 C -0.077 4.077 13 C -0.228 4.228 14 C -0.030 4.030 15 N -0.221 5.221 16 C -0.104 4.104 17 C -0.175 4.175 18 C 0.035 3.965 19 H 0.117 0.883 20 O -0.175 6.175 21 C 0.205 3.795 22 N -0.249 5.249 23 C 0.022 3.978 24 C -0.301 4.301 25 C 0.019 3.981 26 N -0.298 5.298 27 C -0.106 4.106 28 C -0.083 4.083 29 C -0.213 4.213 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.124 0.876 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.193 0.807 40 H 0.167 0.833 41 H 0.187 0.813 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.127 0.873 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.018 -13.953 12.684 21.839 hybrid contribution 0.055 1.477 0.979 1.773 sum 11.072 -12.476 13.663 21.562 Atomic orbital electron populations 1.70048 1.05974 1.27606 1.45984 1.25297 0.95845 0.98861 0.96468 0.85646 0.79187 0.80343 0.78266 1.19061 1.20122 1.20063 1.21382 0.91837 0.80765 1.52715 0.88992 1.83976 1.34444 1.11516 1.77947 1.19389 0.90283 0.88039 0.91839 1.21159 0.93833 0.98929 1.11244 1.20606 0.98198 0.91859 0.97006 1.19797 0.94115 0.95276 1.13569 1.21076 0.98747 0.94389 0.88762 1.65875 1.26842 1.26859 1.02565 1.23204 0.93435 1.01242 0.92505 1.22732 0.98698 0.98697 0.97340 1.23251 0.98103 0.82429 0.92742 0.88280 1.86275 1.73631 1.43034 1.14524 1.20808 0.86719 0.85512 0.86492 1.67686 1.23669 1.23498 1.10004 1.23165 0.89208 0.97449 0.87936 1.22717 1.06307 0.97772 1.03263 1.22968 0.91049 0.95994 0.88075 1.68076 1.19125 1.30028 1.12580 1.23365 1.02045 0.95233 0.89913 1.20491 0.92898 0.96588 0.98283 1.20199 0.99535 0.90417 1.11115 0.92041 0.85545 0.87598 0.90383 0.90556 0.90101 0.91885 0.90152 0.90746 0.80748 0.83313 0.81287 0.89352 0.89497 0.87282 0.86608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.59 13.67 55.48 0.76 -24.84 16 2 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 3 Si 0.94 20.91 29.55 -169.99 -5.02 15.89 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.39 -11.12 9.49 30.89 0.29 -10.82 16 8 H 0.09 2.44 5.20 -52.49 -0.27 2.16 16 9 O -0.18 -5.11 9.76 0.04 0.00 -5.11 16 10 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 11 C -0.23 -5.12 9.17 -39.39 -0.36 -5.48 16 12 C -0.06 -1.06 7.49 -39.61 -0.30 -1.35 16 13 C -0.23 -3.76 3.84 -104.58 -0.40 -4.16 16 14 C 0.10 1.31 5.75 -4.97 -0.03 1.28 16 15 N -0.50 -6.58 5.65 -231.40 -1.31 -7.89 16 16 C 0.02 0.30 6.33 -2.18 -0.01 0.29 16 17 C -0.14 -1.71 6.80 -25.35 -0.17 -1.88 16 18 C 0.09 1.27 3.26 -25.35 -0.08 1.19 16 19 H 0.10 1.29 7.04 -51.93 -0.37 0.92 16 20 O -0.27 -4.55 9.80 -18.07 -0.18 -4.73 16 21 C 0.51 7.57 8.48 -91.25 -0.77 6.80 16 22 N -0.52 -7.70 10.46 -14.73 -0.15 -7.86 16 23 C 0.19 1.85 11.30 -17.22 -0.19 1.65 16 24 C -0.28 -2.03 10.16 -39.32 -0.40 -2.43 16 25 C 0.18 1.56 11.30 -17.22 -0.19 1.36 16 26 N -0.57 -6.93 8.70 -14.73 -0.13 -7.06 16 27 C 0.02 0.32 5.72 -2.18 -0.01 0.30 16 28 C -0.06 -1.13 8.03 -39.61 -0.32 -1.45 16 29 C -0.19 -4.15 9.99 -39.39 -0.39 -4.54 16 30 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.13 2.82 5.64 -52.49 -0.30 2.53 16 32 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 34 H 0.08 0.93 8.02 -51.93 -0.42 0.52 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.90 5.25 -51.93 -0.27 0.63 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.01 7.98 -51.93 -0.41 0.59 16 39 H 0.18 1.10 8.06 -52.48 -0.42 0.68 16 40 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.09 1.52 4.71 -51.93 -0.24 1.28 16 43 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.11 1.64 7.53 -52.49 -0.39 1.24 16 45 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 370.65 15.07 5.59 5.59 Total: -1.00 -33.83 370.65 -9.77 -43.60 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.62 Total: 6.99 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -3.71 Total: -14.59 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.83 Total: -47.64 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.18 Total: -9.83 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.83 -9.77 -43.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137122942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.035 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds