Wall clock time and date at job start Sat Apr 11 2020 06:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86801 * 119.99844 * 2 1 4 4 H 1.48498 * 109.46851 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46803 * 299.99993 * 3 2 1 6 6 H 1.48492 * 109.47108 * 60.00114 * 3 2 1 7 7 C 1.38657 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99651 * 180.02562 * 7 2 1 9 9 O 1.34828 * 119.99967 * 359.97438 * 7 2 1 10 10 C 1.35755 * 117.00073 * 185.06162 * 9 7 2 11 11 C 1.38880 * 120.06296 * 354.46330 * 10 9 7 12 12 C 1.38106 * 119.92623 * 179.97438 * 11 10 9 13 13 C 1.38301 * 120.06678 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.93096 * 179.97438 * 13 12 11 15 15 N 1.46902 * 109.47008 * 90.00309 * 14 13 12 16 16 C 1.48561 * 110.99838 * 69.87419 * 15 14 13 17 17 C 1.54382 * 104.59430 * 200.95952 * 16 15 14 18 18 C 1.54256 * 105.06065 * 23.85489 * 17 16 15 19 19 H 1.09001 * 110.32784 * 241.00314 * 18 17 16 20 20 O 1.42898 * 110.32484 * 118.89297 * 18 17 16 21 21 C 1.35459 * 116.99843 * 91.45384 * 20 18 17 22 22 N 1.32316 * 119.19464 * 180.02562 * 21 20 18 23 23 C 1.32303 * 120.75776 * 180.02562 * 22 21 20 24 24 C 1.38592 * 119.17819 * 359.97438 * 23 22 21 25 25 C 1.38596 * 118.51489 * 0.28519 * 24 23 22 26 26 N 1.32293 * 119.17986 * 359.41240 * 25 24 23 27 27 C 1.48557 * 110.99872 * 314.45830 * 15 14 13 28 28 C 1.38299 * 120.14103 * 0.28404 * 13 12 11 29 29 C 1.38099 * 120.07030 * 359.48143 * 28 13 12 30 30 H 0.97002 * 120.00438 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.03660 * 0.02562 * 11 10 9 32 32 H 1.07992 * 119.96434 * 180.02562 * 12 11 10 33 33 H 1.09004 * 109.46676 * 330.01141 * 14 13 12 34 34 H 1.08995 * 109.47486 * 210.00690 * 14 13 12 35 35 H 1.09001 * 110.40686 * 82.18309 * 16 15 14 36 36 H 1.09002 * 110.41281 * 319.74154 * 16 15 14 37 37 H 1.08999 * 110.32197 * 264.95828 * 17 16 15 38 38 H 1.09001 * 110.32281 * 142.75027 * 17 16 15 39 39 H 1.08004 * 120.41073 * 180.02562 * 23 22 21 40 40 H 1.07993 * 120.73937 * 180.02562 * 24 23 22 41 41 H 1.08000 * 120.40876 * 179.72560 * 25 24 23 42 42 H 1.09006 * 110.41694 * 40.26186 * 27 15 14 43 43 H 1.09004 * 110.41606 * 277.81631 * 27 15 14 44 44 H 1.08001 * 119.96667 * 179.72379 * 28 13 12 45 45 H 1.07998 * 120.04205 * 180.25726 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8907 2.3964 -1.2126 6 1 1.8908 2.3964 1.2124 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2007 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5047 0.1056 11 6 3.4573 -3.4394 0.0922 12 6 4.2025 -4.5970 0.2009 13 6 3.5688 -5.8202 0.3236 14 6 4.3851 -7.0815 0.4415 15 7 4.6583 -7.3573 1.8583 16 6 3.4199 -7.7667 2.5694 17 6 3.7193 -7.4957 4.0595 18 6 4.8215 -6.4164 4.0570 19 1 5.7217 -6.7934 4.5424 20 8 4.3609 -5.2351 4.7161 21 6 4.6066 -5.1367 6.0446 22 7 4.1987 -4.0611 6.6984 23 6 4.4226 -3.9326 7.9960 24 6 5.0925 -4.9419 8.6693 25 6 5.5102 -6.0517 7.9519 26 7 5.2481 -6.1188 6.6569 27 6 5.0953 -6.1262 2.5656 28 6 2.1876 -5.8889 0.3320 29 6 1.4367 -4.7345 0.2285 30 1 -0.4851 0.8400 0.0004 31 1 3.9526 -2.4844 -0.0023 32 1 5.2813 -4.5470 0.1910 33 1 5.3271 -6.9558 -0.0924 34 1 3.8309 -7.9147 0.0095 35 1 3.2217 -8.8263 2.4081 36 1 2.5738 -7.1657 2.2362 37 1 4.0791 -8.4031 4.5445 38 1 2.8270 -7.1243 4.5635 39 1 4.0867 -3.0525 8.5243 40 1 5.2884 -4.8634 9.7284 41 1 6.0388 -6.8542 8.4449 42 1 4.5114 -5.2683 2.2319 43 1 6.1585 -5.9504 2.4016 44 1 1.6956 -6.8460 0.4234 45 1 0.3581 -4.7883 0.2392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137122942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:04 Heat of formation + Delta-G solvation = 12.993795 kcal Electronic energy + Delta-G solvation = -29153.483623 eV Core-core repulsion = 25137.134732 eV Total energy + Delta-G solvation = -4016.348891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.24984 -41.27719 -40.30576 -39.02550 -37.53621 -34.83271 -34.41565 -33.35661 -32.19754 -31.92427 -30.09638 -29.63674 -27.55354 -26.20661 -25.47205 -24.90540 -23.74769 -22.79378 -21.97002 -21.45206 -19.90932 -19.81053 -18.88033 -18.68958 -17.42622 -17.13350 -16.69380 -16.53570 -16.46697 -16.24679 -15.89091 -15.66225 -15.54620 -15.33469 -15.07152 -14.58340 -14.52325 -14.34314 -14.31253 -14.21334 -13.72160 -13.58617 -13.06705 -12.96160 -12.61140 -12.50603 -12.34483 -12.33306 -12.14875 -12.13846 -12.05345 -12.02814 -11.83704 -11.66111 -11.22195 -10.82902 -10.19266 -9.99390 -9.79819 -9.55538 -8.96380 -8.51250 -6.19486 0.00895 0.12254 0.52980 0.60806 1.30956 1.39713 1.49668 1.51010 2.14238 2.74232 2.77123 2.96360 3.09218 3.23235 3.47480 3.48754 3.59569 3.72333 3.77680 3.95903 4.00426 4.06065 4.14158 4.24592 4.30880 4.34763 4.41217 4.49802 4.52425 4.68043 4.70545 4.76996 4.84041 4.87423 4.94211 4.95805 5.03510 5.08018 5.10938 5.22409 5.30002 5.49432 5.55947 5.66544 5.75916 5.86745 5.94035 5.98835 6.16412 6.24188 6.93381 7.08455 7.73461 8.72286 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008881 B = 0.003448 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3152.161125 B = 8119.314200 C =10494.896441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.253 1.253 5 H -0.264 1.264 6 H -0.268 1.268 7 C -0.414 4.414 8 H 0.099 0.901 9 O -0.232 6.232 10 C 0.117 3.883 11 C -0.244 4.244 12 C -0.053 4.053 13 C -0.194 4.194 14 C 0.099 3.901 15 N -0.484 5.484 16 C 0.023 3.977 17 C -0.131 4.131 18 C 0.093 3.907 19 H 0.106 0.894 20 O -0.312 6.312 21 C 0.478 3.522 22 N -0.574 5.574 23 C 0.170 3.830 24 C -0.251 4.251 25 C 0.176 3.824 26 N -0.577 5.577 27 C 0.022 3.978 28 C -0.055 4.055 29 C -0.208 4.208 30 H 0.273 0.727 31 H 0.115 0.885 32 H 0.137 0.863 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.044 0.956 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.202 0.798 40 H 0.195 0.805 41 H 0.213 0.787 42 H 0.055 0.945 43 H 0.100 0.900 44 H 0.147 0.853 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.506 -16.693 15.894 27.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.177 1.177 5 H -0.189 1.189 6 H -0.193 1.193 7 C -0.490 4.490 8 H 0.116 0.884 9 O -0.139 6.139 10 C 0.066 3.934 11 C -0.264 4.264 12 C -0.072 4.072 13 C -0.196 4.196 14 C -0.029 4.029 15 N -0.207 5.207 16 C -0.105 4.105 17 C -0.169 4.169 18 C 0.036 3.964 19 H 0.124 0.876 20 O -0.214 6.214 21 C 0.176 3.824 22 N -0.301 5.301 23 C 0.006 3.994 24 C -0.273 4.273 25 C 0.012 3.988 26 N -0.307 5.307 27 C -0.106 4.106 28 C -0.074 4.074 29 C -0.227 4.227 30 H 0.082 0.918 31 H 0.132 0.868 32 H 0.155 0.845 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.062 0.938 37 H 0.119 0.881 38 H 0.075 0.925 39 H 0.219 0.781 40 H 0.212 0.788 41 H 0.229 0.771 42 H 0.073 0.927 43 H 0.119 0.881 44 H 0.165 0.835 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.204 -16.900 14.617 26.477 hybrid contribution -0.766 2.003 0.603 2.228 sum 13.438 -14.897 15.220 25.182 Atomic orbital electron populations 1.70188 1.07993 1.28781 1.48831 1.26598 0.96887 1.02719 0.95776 0.84546 0.78163 0.74846 0.78746 1.17664 1.18866 1.19292 1.21835 0.92413 0.81491 1.53262 0.88384 1.83936 1.36012 1.12636 1.81287 1.19944 0.91609 0.87978 0.93841 1.21240 0.93149 1.00041 1.11934 1.20953 0.99611 0.91115 0.95530 1.20358 0.94090 0.96484 1.08697 1.21276 0.99361 0.92910 0.89320 1.65922 1.26844 1.25744 1.02197 1.23297 0.92349 1.02511 0.92318 1.22701 0.97716 0.99024 0.97433 1.23298 0.98730 0.82182 0.92165 0.87563 1.86191 1.74669 1.44316 1.16178 1.20873 0.88703 0.86714 0.86133 1.67595 1.25471 1.24571 1.12498 1.23801 0.89569 0.99351 0.86693 1.23189 1.03161 0.95843 1.05063 1.23830 0.90554 0.97495 0.86957 1.68086 1.19021 1.29191 1.14384 1.23361 1.02330 0.94288 0.90649 1.20916 0.93445 0.96698 0.96296 1.20464 0.99866 0.90792 1.11626 0.91767 0.86757 0.84527 0.88402 0.87965 0.87268 0.93802 0.88121 0.92490 0.78118 0.78800 0.77057 0.92676 0.88132 0.83522 0.87178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.27 13.67 21.61 0.30 -57.97 16 2 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 3 Si 1.02 44.72 29.55 68.60 2.03 46.74 16 4 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.41 -25.25 9.49 67.92 0.64 -24.60 16 8 H 0.10 5.56 5.20 -2.92 -0.02 5.55 16 9 O -0.23 -14.64 9.76 -22.77 -0.22 -14.86 16 10 C 0.12 6.12 6.65 22.58 0.15 6.27 16 11 C -0.24 -11.23 9.17 22.39 0.21 -11.03 16 12 C -0.05 -1.91 7.49 22.25 0.17 -1.74 16 13 C -0.19 -6.06 3.84 -19.83 -0.08 -6.14 16 14 C 0.10 2.22 5.75 85.56 0.49 2.71 16 15 N -0.48 -11.06 5.65 -886.00 -5.01 -16.07 16 16 C 0.02 0.51 6.33 86.45 0.55 1.06 16 17 C -0.13 -3.06 6.80 31.49 0.21 -2.85 16 18 C 0.09 2.49 3.26 31.49 0.10 2.60 16 19 H 0.11 2.62 7.04 -2.39 -0.02 2.60 16 20 O -0.31 -10.70 9.80 -87.57 -0.86 -11.56 16 21 C 0.48 14.52 8.48 180.57 1.53 16.06 16 22 N -0.57 -17.34 10.46 -313.47 -3.28 -20.62 16 23 C 0.17 3.11 11.30 84.71 0.96 4.07 16 24 C -0.25 -2.83 10.16 22.44 0.23 -2.61 16 25 C 0.18 2.42 11.30 84.71 0.96 3.38 16 26 N -0.58 -13.32 8.70 -313.47 -2.73 -16.05 16 27 C 0.02 0.58 5.72 86.45 0.49 1.08 16 28 C -0.06 -1.89 8.03 22.25 0.18 -1.71 16 29 C -0.21 -9.30 9.99 22.39 0.22 -9.08 16 30 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 31 H 0.11 5.42 5.64 -2.91 -0.02 5.41 16 32 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 33 H 0.10 1.94 8.08 -2.39 -0.02 1.92 16 34 H 0.10 1.91 8.02 -2.39 -0.02 1.89 16 35 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.04 1.16 5.25 -2.39 -0.01 1.15 16 37 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.06 1.54 7.98 -2.39 -0.02 1.52 16 39 H 0.20 2.23 8.06 -2.91 -0.02 2.20 16 40 H 0.19 0.39 8.06 -2.91 -0.02 0.36 16 41 H 0.21 0.94 8.06 -2.91 -0.02 0.91 16 42 H 0.06 1.87 4.71 -2.38 -0.01 1.86 16 43 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 44 H 0.15 3.94 7.53 -2.91 -0.02 3.92 16 45 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -83.73 370.65 -1.26 -84.99 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 1.02 Total: 28.77 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 7.48 Total: -23.38 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -10.72 Total: -110.70 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -1.08 Total: -26.42 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -83.73 -1.26 -84.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137122942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.984 kcal (2) G-P(sol) polarization free energy of solvation -83.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds