Wall clock time and date at job start Sat Apr 11 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34687 * 116.99554 * 2 1 4 4 O 1.21433 * 120.00126 * 359.97438 * 3 2 1 5 5 C 1.48047 * 119.99387 * 180.26972 * 3 2 1 6 6 C 1.39178 * 119.68018 * 179.71992 * 5 3 2 7 7 C 1.38791 * 119.22532 * 179.97438 * 6 5 3 8 8 C 1.50695 * 120.71389 * 180.02562 * 7 6 5 9 9 C 1.38298 * 118.58273 * 359.97438 * 7 6 5 10 10 C 1.39485 * 119.29515 * 0.02562 * 9 7 6 11 11 N 1.38976 * 119.63209 * 179.97438 * 10 9 7 12 12 C 1.46503 * 120.00211 * 4.99918 * 11 10 9 13 13 C 1.50703 * 109.46964 * 89.99589 * 12 11 10 14 14 H 1.08003 * 120.00293 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00176 * 179.97438 * 13 12 11 16 16 N 1.31506 * 120.00180 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99714 * 0.02562 * 15 13 12 18 18 H 1.48510 * 109.46889 * 89.99926 * 17 15 13 19 19 H 1.48493 * 109.47286 * 209.99684 * 17 15 13 20 20 H 1.48503 * 109.47351 * 330.00160 * 17 15 13 21 21 C 1.46502 * 120.00052 * 184.99565 * 11 10 9 22 22 C 1.50705 * 109.46582 * 90.00340 * 21 11 10 23 23 C 1.38672 * 120.41691 * 269.71938 * 22 21 11 24 24 C 1.38628 * 118.42043 * 179.78428 * 23 22 21 25 25 C 1.38233 * 119.15895 * 0.52090 * 24 23 22 26 26 N 1.31848 * 120.76182 * 359.71920 * 25 24 23 27 27 C 1.31884 * 121.72777 * 0.02562 * 26 25 24 28 28 N 1.32060 * 120.72862 * 359.73762 * 10 9 7 29 29 H 1.09001 * 109.46882 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47630 * 300.00521 * 1 2 3 31 31 H 1.09004 * 109.46770 * 60.00925 * 1 2 3 32 32 H 1.08000 * 120.38849 * 0.02562 * 6 5 3 33 33 H 1.09003 * 109.47353 * 89.99235 * 8 7 6 34 34 H 1.08996 * 109.47309 * 209.99960 * 8 7 6 35 35 H 1.09001 * 109.46811 * 330.00114 * 8 7 6 36 36 H 1.07994 * 120.35031 * 180.02562 * 9 7 6 37 37 H 1.08997 * 109.47457 * 209.99469 * 12 11 10 38 38 H 1.08999 * 109.46765 * 330.00025 * 12 11 10 39 39 H 0.97006 * 120.00230 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.47280 * 210.00163 * 21 11 10 41 41 H 1.08995 * 109.47200 * 330.00680 * 21 11 10 42 42 H 1.08006 * 120.79273 * 0.02711 * 23 22 21 43 43 H 1.08003 * 120.42125 * 180.21840 * 24 23 22 44 44 H 1.07999 * 119.61863 * 179.74733 * 25 24 23 45 45 H 1.08006 * 119.61853 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2001 0.0000 4 8 1.4020 2.2185 -0.0005 5 6 3.5418 1.2776 -0.0060 6 6 4.1668 2.5211 -0.0119 7 6 5.5533 2.5827 -0.0170 8 6 6.2647 3.9112 -0.0229 9 6 6.2682 1.3989 -0.0155 10 6 5.5797 0.1858 -0.0095 11 7 6.2911 -1.0081 -0.0085 12 6 7.7522 -0.9901 0.0969 13 6 8.1518 -1.0430 1.5490 14 1 7.3933 -1.0862 2.3166 15 6 9.4858 -1.0374 1.8976 16 7 9.8345 -1.0831 3.1648 17 14 10.7978 -0.9634 0.5699 18 1 11.1245 0.4551 0.2754 19 1 12.0188 -1.6651 1.0409 20 1 10.2930 -1.6211 -0.6621 21 6 5.5799 -2.2846 -0.1127 22 6 5.4375 -2.6631 -1.5645 23 6 4.3263 -2.2597 -2.2895 24 6 4.2398 -2.6272 -3.6233 25 6 5.2515 -3.3874 -4.1795 26 7 6.2915 -3.7573 -3.4583 27 6 6.4094 -3.4218 -2.1883 28 7 4.2594 0.1593 -0.0001 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 3.5797 3.4276 -0.0117 33 1 6.4398 4.2342 1.0034 34 1 7.2189 3.8101 -0.5398 35 1 5.6498 4.6503 -0.5363 36 1 7.3480 1.4135 -0.0189 37 1 8.1649 -1.8533 -0.4252 38 1 8.1376 -0.0750 -0.3529 39 1 10.7730 -1.0787 3.4101 40 1 6.1424 -3.0577 0.4108 41 1 4.5914 -2.1875 0.3361 42 1 3.5487 -1.6699 -1.8270 43 1 3.3903 -2.3276 -4.2191 44 1 5.1897 -3.6813 -5.2169 45 1 7.2761 -3.7430 -1.6296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164010227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:26 Heat of formation + Delta-G solvation = 2.204046 kcal Electronic energy + Delta-G solvation = -29689.693731 eV Core-core repulsion = 25672.876961 eV Total energy + Delta-G solvation = -4016.816770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.68510 -40.04220 -39.47218 -36.69327 -36.23906 -33.77429 -32.99538 -32.38482 -31.62812 -30.14491 -28.34113 -27.91790 -27.45210 -25.50993 -24.37117 -23.40406 -22.60944 -22.09108 -20.63183 -19.93543 -17.78034 -17.23744 -17.08843 -16.78662 -16.37311 -16.30953 -16.10966 -15.65346 -15.26666 -15.14076 -14.48069 -14.32751 -13.93745 -13.80205 -13.39232 -13.35840 -13.27791 -12.84949 -12.69672 -12.62171 -12.51015 -12.41665 -12.14939 -11.98074 -11.77456 -11.52803 -11.25323 -11.06563 -10.82055 -10.79922 -10.65161 -10.44283 -9.81355 -9.64202 -9.40123 -9.31087 -9.24244 -9.15212 -8.83231 -8.75584 -7.01317 -6.25407 -4.27451 0.85564 1.23469 1.46717 1.71929 2.63100 2.63830 3.13868 3.22473 3.24239 3.49910 4.03607 4.19204 4.22410 4.49330 4.60205 4.88679 4.97520 5.01514 5.04419 5.08932 5.11294 5.17533 5.22371 5.26755 5.37427 5.40827 5.44340 5.53350 5.62041 5.70273 5.83149 5.92270 5.98406 6.03696 6.10900 6.20008 6.26126 6.30850 6.41599 6.53200 6.58061 6.69040 6.82673 6.87502 7.33023 7.39374 7.72489 7.96838 8.11939 8.26087 8.47124 8.81884 9.33040 10.87163 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008002 B = 0.004882 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3498.214270 B = 5733.860547 C = 7998.372985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.335 6.335 3 C 0.529 3.471 4 O -0.506 6.506 5 C 0.131 3.869 6 C -0.178 4.178 7 C -0.019 4.019 8 C -0.112 4.112 9 C -0.187 4.187 10 C 0.421 3.579 11 N -0.574 5.574 12 C 0.223 3.777 13 C -0.541 4.541 14 H 0.079 0.921 15 C 0.078 3.922 16 N -0.889 5.889 17 Si 0.867 3.133 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.263 1.263 21 C 0.169 3.831 22 C -0.144 4.144 23 C -0.054 4.054 24 C -0.181 4.181 25 C 0.089 3.911 26 N -0.491 5.491 27 C 0.110 3.890 28 N -0.514 5.514 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.137 0.863 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.146 0.854 37 H 0.036 0.964 38 H 0.028 0.972 39 H 0.267 0.733 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.140 0.860 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.835 2.368 -10.320 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.250 6.250 3 C 0.372 3.628 4 O -0.394 6.394 5 C -0.006 4.006 6 C -0.202 4.202 7 C -0.026 4.026 8 C -0.169 4.169 9 C -0.213 4.213 10 C 0.183 3.817 11 N -0.282 5.282 12 C 0.103 3.897 13 C -0.579 4.579 14 H 0.097 0.903 15 C -0.126 4.126 16 N -0.526 5.526 17 Si 0.694 3.306 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.188 1.188 21 C 0.045 3.955 22 C -0.148 4.148 23 C -0.081 4.081 24 C -0.201 4.201 25 C -0.068 4.068 26 N -0.199 5.199 27 C -0.047 4.047 28 N -0.236 5.236 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.155 0.845 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.164 0.836 37 H 0.054 0.946 38 H 0.046 0.954 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.158 0.842 43 H 0.146 0.854 44 H 0.166 0.834 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.555 1.158 -10.552 16.441 hybrid contribution 0.366 1.344 -0.107 1.397 sum -12.189 2.502 -10.658 16.384 Atomic orbital electron populations 1.23295 0.76710 1.03698 1.02354 1.86711 1.22689 1.32100 1.83455 1.21026 0.88184 0.81417 0.72135 1.90812 1.66076 1.36271 1.46235 1.19367 0.89382 0.89670 1.02133 1.21420 0.94366 0.97369 1.07086 1.19944 0.92673 0.95609 0.94410 1.20784 1.00228 0.92823 1.03058 1.21798 1.02143 0.90893 1.06433 1.18216 0.86888 0.86989 0.89647 1.46685 1.06629 1.00957 1.73960 1.19810 0.74230 0.97498 0.98210 1.21391 0.93346 1.52420 0.90752 0.90265 1.24846 0.98257 0.94263 0.95191 1.69882 1.17530 1.49278 1.15946 0.86992 0.82103 0.78968 0.82584 1.19875 1.20757 1.18764 1.20168 0.99200 0.86201 0.89925 1.21534 0.95386 0.98605 0.99226 1.21694 0.97324 0.95556 0.93490 1.22114 1.00789 1.00966 0.96255 1.22676 0.89792 0.94761 0.99591 1.67686 1.23568 1.21368 1.07279 1.22788 0.97606 0.93834 0.90482 1.67012 1.06315 1.30084 1.20141 0.88044 0.91931 0.92025 0.84504 0.90324 0.90943 0.91235 0.83633 0.94603 0.95389 0.92311 0.89156 0.88880 0.84224 0.85367 0.83370 0.82760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.39 16 2 O -0.33 -4.65 10.38 -40.46 -0.42 -5.07 16 3 C 0.53 8.21 7.95 34.75 0.28 8.49 16 4 O -0.51 -8.26 16.10 -19.21 -0.31 -8.57 16 5 C 0.13 2.17 6.74 -83.05 -0.56 1.61 16 6 C -0.18 -2.70 9.33 -39.03 -0.36 -3.07 16 7 C -0.02 -0.29 5.91 -104.40 -0.62 -0.90 16 8 C -0.11 -1.30 10.05 36.00 0.36 -0.94 16 9 C -0.19 -3.31 8.97 -39.10 -0.35 -3.66 16 10 C 0.42 7.86 7.37 -155.20 -1.14 6.71 16 11 N -0.57 -10.96 2.55 -176.57 -0.45 -11.41 16 12 C 0.22 4.74 4.07 -5.19 -0.02 4.71 16 13 C -0.54 -13.79 9.94 -34.44 -0.34 -14.13 16 14 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 15 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 16 N -0.89 -25.40 13.96 55.43 0.77 -24.63 16 17 Si 0.87 19.41 27.47 -169.99 -4.67 14.74 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 21 C 0.17 2.83 5.62 -5.19 -0.03 2.80 16 22 C -0.14 -2.22 5.48 -104.48 -0.57 -2.80 16 23 C -0.05 -0.77 9.86 -39.28 -0.39 -1.16 16 24 C -0.18 -2.25 10.11 -39.44 -0.40 -2.65 16 25 C 0.09 1.16 11.18 -17.55 -0.20 0.96 16 26 N -0.49 -7.63 10.36 -13.25 -0.14 -7.77 16 27 C 0.11 1.73 10.86 -17.55 -0.19 1.54 16 28 N -0.51 -9.04 8.54 -9.01 -0.08 -9.12 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.14 1.87 7.63 -52.49 -0.40 1.47 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.80 8.10 -51.93 -0.42 0.37 16 35 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.15 2.64 6.02 -52.49 -0.32 2.32 16 37 H 0.04 0.75 7.13 -51.93 -0.37 0.38 16 38 H 0.03 0.59 5.40 -51.93 -0.28 0.31 16 39 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.09 1.50 8.02 -51.93 -0.42 1.09 16 41 H 0.09 1.54 7.24 -51.93 -0.38 1.17 16 42 H 0.14 1.99 7.76 -52.48 -0.41 1.59 16 43 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 44 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 45 H 0.16 2.33 8.06 -52.48 -0.42 1.91 16 LS Contribution 388.11 15.07 5.85 5.85 Total: -1.00 -30.57 388.11 -8.96 -39.54 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.96 Total: 5.58 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -3.57 Total: 0.86 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.11 Total: -52.93 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.73 Total: -13.64 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.67 Total: 14.74 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.57 -8.96 -39.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164010227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.743 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds