Wall clock time and date at job start Sat Apr 11 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34687 * 116.99554 * 2 1 4 4 O 1.21433 * 120.00126 * 359.97438 * 3 2 1 5 5 C 1.48047 * 119.99387 * 180.26972 * 3 2 1 6 6 C 1.39178 * 119.68018 * 179.71992 * 5 3 2 7 7 C 1.38791 * 119.22532 * 179.97438 * 6 5 3 8 8 C 1.50695 * 120.71389 * 180.02562 * 7 6 5 9 9 C 1.38298 * 118.58273 * 359.97438 * 7 6 5 10 10 C 1.39485 * 119.29515 * 0.02562 * 9 7 6 11 11 N 1.38976 * 119.63209 * 179.97438 * 10 9 7 12 12 C 1.46503 * 120.00211 * 4.99918 * 11 10 9 13 13 C 1.50703 * 109.46964 * 89.99589 * 12 11 10 14 14 H 1.08003 * 120.00293 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00176 * 179.97438 * 13 12 11 16 16 N 1.31506 * 120.00180 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99714 * 0.02562 * 15 13 12 18 18 H 1.48510 * 109.46889 * 89.99926 * 17 15 13 19 19 H 1.48493 * 109.47286 * 209.99684 * 17 15 13 20 20 H 1.48503 * 109.47351 * 330.00160 * 17 15 13 21 21 C 1.46502 * 120.00052 * 184.99565 * 11 10 9 22 22 C 1.50705 * 109.46582 * 90.00340 * 21 11 10 23 23 C 1.38672 * 120.41691 * 269.71938 * 22 21 11 24 24 C 1.38628 * 118.42043 * 179.78428 * 23 22 21 25 25 C 1.38233 * 119.15895 * 0.52090 * 24 23 22 26 26 N 1.31848 * 120.76182 * 359.71920 * 25 24 23 27 27 C 1.31884 * 121.72777 * 0.02562 * 26 25 24 28 28 N 1.32060 * 120.72862 * 359.73762 * 10 9 7 29 29 H 1.09001 * 109.46882 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47630 * 300.00521 * 1 2 3 31 31 H 1.09004 * 109.46770 * 60.00925 * 1 2 3 32 32 H 1.08000 * 120.38849 * 0.02562 * 6 5 3 33 33 H 1.09003 * 109.47353 * 89.99235 * 8 7 6 34 34 H 1.08996 * 109.47309 * 209.99960 * 8 7 6 35 35 H 1.09001 * 109.46811 * 330.00114 * 8 7 6 36 36 H 1.07994 * 120.35031 * 180.02562 * 9 7 6 37 37 H 1.08997 * 109.47457 * 209.99469 * 12 11 10 38 38 H 1.08999 * 109.46765 * 330.00025 * 12 11 10 39 39 H 0.97006 * 120.00230 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.47280 * 210.00163 * 21 11 10 41 41 H 1.08995 * 109.47200 * 330.00680 * 21 11 10 42 42 H 1.08006 * 120.79273 * 0.02711 * 23 22 21 43 43 H 1.08003 * 120.42125 * 180.21840 * 24 23 22 44 44 H 1.07999 * 119.61863 * 179.74733 * 25 24 23 45 45 H 1.08006 * 119.61853 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2001 0.0000 4 8 1.4020 2.2185 -0.0005 5 6 3.5418 1.2776 -0.0060 6 6 4.1668 2.5211 -0.0119 7 6 5.5533 2.5827 -0.0170 8 6 6.2647 3.9112 -0.0229 9 6 6.2682 1.3989 -0.0155 10 6 5.5797 0.1858 -0.0095 11 7 6.2911 -1.0081 -0.0085 12 6 7.7522 -0.9901 0.0969 13 6 8.1518 -1.0430 1.5490 14 1 7.3933 -1.0862 2.3166 15 6 9.4858 -1.0374 1.8976 16 7 9.8345 -1.0831 3.1648 17 14 10.7978 -0.9634 0.5699 18 1 11.1245 0.4551 0.2754 19 1 12.0188 -1.6651 1.0409 20 1 10.2930 -1.6211 -0.6621 21 6 5.5799 -2.2846 -0.1127 22 6 5.4375 -2.6631 -1.5645 23 6 4.3263 -2.2597 -2.2895 24 6 4.2398 -2.6272 -3.6233 25 6 5.2515 -3.3874 -4.1795 26 7 6.2915 -3.7573 -3.4583 27 6 6.4094 -3.4218 -2.1883 28 7 4.2594 0.1593 -0.0001 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 3.5797 3.4276 -0.0117 33 1 6.4398 4.2342 1.0034 34 1 7.2189 3.8101 -0.5398 35 1 5.6498 4.6503 -0.5363 36 1 7.3480 1.4135 -0.0189 37 1 8.1649 -1.8533 -0.4252 38 1 8.1376 -0.0750 -0.3529 39 1 10.7730 -1.0787 3.4101 40 1 6.1424 -3.0577 0.4108 41 1 4.5914 -2.1875 0.3361 42 1 3.5487 -1.6699 -1.8270 43 1 3.3903 -2.3276 -4.2191 44 1 5.1897 -3.6813 -5.2169 45 1 7.2761 -3.7430 -1.6296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164010227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:25 Heat of formation + Delta-G solvation = -13.719130 kcal Electronic energy + Delta-G solvation = -29690.384212 eV Core-core repulsion = 25672.876961 eV Total energy + Delta-G solvation = -4017.507251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.91220 -41.18252 -40.67164 -38.00359 -37.45716 -35.14396 -34.62331 -33.77464 -32.73428 -31.58949 -29.81767 -28.81609 -28.68612 -26.83846 -25.59790 -24.62798 -24.14555 -23.26159 -21.80499 -21.33391 -19.08595 -18.97969 -18.42643 -17.91095 -17.52763 -17.45813 -17.31495 -16.91660 -16.68555 -16.40827 -16.05265 -15.66639 -15.21743 -14.83534 -14.68408 -14.50709 -14.36634 -14.25752 -13.96313 -13.82773 -13.77126 -13.63841 -13.30852 -13.16548 -13.00824 -12.82286 -12.65964 -12.58949 -12.28923 -12.07288 -11.96012 -11.80300 -11.72206 -10.92952 -10.80425 -10.76804 -10.54066 -10.44413 -10.36325 -9.94828 -8.45750 -8.29793 -6.36949 -0.42038 0.14341 0.36364 0.44922 1.37294 1.38613 1.40316 1.48849 1.56673 2.12553 2.32619 2.85711 2.94250 3.03640 3.29354 3.55918 3.76420 3.87876 3.91781 4.03060 4.11993 4.13434 4.17047 4.22712 4.29133 4.35349 4.39221 4.48307 4.69172 4.71074 4.72580 4.75456 4.80735 4.82478 4.87836 4.90391 4.93754 5.12865 5.18078 5.23689 5.39014 5.42866 5.44219 5.58759 5.80273 5.86295 6.27766 6.53686 6.56281 6.68519 7.02890 7.06890 7.29366 8.86202 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008002 B = 0.004882 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3498.214270 B = 5733.860547 C = 7998.372985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.345 6.345 3 C 0.532 3.468 4 O -0.517 6.517 5 C 0.117 3.883 6 C -0.173 4.173 7 C -0.010 4.010 8 C -0.112 4.112 9 C -0.211 4.211 10 C 0.402 3.598 11 N -0.585 5.585 12 C 0.236 3.764 13 C -0.535 4.535 14 H 0.030 0.970 15 C 0.023 3.977 16 N -0.942 5.942 17 Si 0.935 3.065 18 H -0.261 1.261 19 H -0.285 1.285 20 H -0.243 1.243 21 C 0.175 3.825 22 C -0.151 4.151 23 C -0.059 4.059 24 C -0.170 4.170 25 C 0.089 3.911 26 N -0.511 5.511 27 C 0.096 3.904 28 N -0.518 5.518 29 H 0.131 0.869 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.157 0.843 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.137 0.863 37 H 0.043 0.957 38 H 0.038 0.962 39 H 0.268 0.732 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.137 0.863 43 H 0.163 0.837 44 H 0.183 0.817 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.929 3.337 -13.208 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.259 6.259 3 C 0.376 3.624 4 O -0.406 6.406 5 C -0.020 4.020 6 C -0.197 4.197 7 C -0.017 4.017 8 C -0.168 4.168 9 C -0.237 4.237 10 C 0.165 3.835 11 N -0.294 5.294 12 C 0.114 3.886 13 C -0.574 4.574 14 H 0.048 0.952 15 C -0.176 4.176 16 N -0.581 5.581 17 Si 0.758 3.242 18 H -0.186 1.186 19 H -0.210 1.210 20 H -0.166 1.166 21 C 0.051 3.949 22 C -0.155 4.155 23 C -0.086 4.086 24 C -0.190 4.190 25 C -0.068 4.068 26 N -0.220 5.220 27 C -0.060 4.060 28 N -0.239 5.239 29 H 0.149 0.851 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.175 0.825 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.154 0.846 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.155 0.845 43 H 0.180 0.820 44 H 0.200 0.800 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.697 2.126 -13.453 19.316 hybrid contribution 0.480 1.066 0.825 1.430 sum -13.218 3.191 -12.629 18.557 Atomic orbital electron populations 1.23654 0.74227 1.05884 1.02922 1.86691 1.25148 1.31209 1.82900 1.20838 0.87778 0.81791 0.71975 1.90798 1.66158 1.36641 1.46984 1.19762 0.90205 0.89964 1.02068 1.21705 0.94553 0.97695 1.05744 1.20338 0.92775 0.96352 0.92274 1.20894 1.00678 0.91269 1.03944 1.21883 1.01908 0.91699 1.08181 1.18403 0.87489 0.87089 0.90561 1.46573 1.05862 1.01962 1.75013 1.19493 0.76000 0.97952 0.95124 1.21533 0.92358 1.51406 0.92115 0.95196 1.25708 1.00730 0.93818 0.97366 1.70045 1.18095 1.51469 1.18537 0.85897 0.78567 0.79636 0.80078 1.18612 1.21029 1.16633 1.20094 0.98415 0.85168 0.91219 1.21326 0.96303 0.99533 0.98309 1.21754 0.96775 0.95625 0.94450 1.22447 1.01479 0.99587 0.95466 1.23286 0.88888 0.93840 1.00828 1.67705 1.24966 1.22133 1.07177 1.22744 0.97775 0.94528 0.90970 1.66990 1.05882 1.30807 1.20263 0.85138 0.91694 0.91132 0.82508 0.89621 0.90266 0.88651 0.84568 0.93940 0.94445 0.92294 0.90191 0.89292 0.84509 0.81973 0.79974 0.83233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.34 -9.18 10.38 -55.97 -0.58 -9.76 16 3 C 0.53 15.97 7.95 70.43 0.56 16.53 16 4 O -0.52 -16.10 16.10 20.05 0.32 -15.78 16 5 C 0.12 3.77 6.74 41.82 0.28 4.06 16 6 C -0.17 -5.01 9.33 22.63 0.21 -4.80 16 7 C -0.01 -0.29 5.91 -19.72 -0.12 -0.40 16 8 C -0.11 -2.33 10.05 71.23 0.72 -1.61 16 9 C -0.21 -7.51 8.97 22.58 0.20 -7.30 16 10 C 0.40 15.27 7.37 133.26 0.98 16.25 16 11 N -0.58 -23.00 2.55 -712.54 -1.82 -24.82 16 12 C 0.24 10.20 4.07 85.63 0.35 10.55 16 13 C -0.54 -28.49 9.94 25.60 0.25 -28.23 16 14 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 15 C 0.02 1.23 5.47 84.66 0.46 1.69 16 16 N -0.94 -55.92 13.96 21.45 0.30 -55.62 16 17 Si 0.94 40.20 27.47 68.60 1.88 42.09 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.24 -9.58 6.54 99.48 0.65 -8.93 16 21 C 0.17 6.08 5.62 85.63 0.48 6.57 16 22 C -0.15 -4.67 5.48 -19.77 -0.11 -4.78 16 23 C -0.06 -1.62 9.86 22.47 0.22 -1.40 16 24 C -0.17 -3.74 10.11 22.36 0.23 -3.52 16 25 C 0.09 2.06 11.18 84.69 0.95 3.01 16 26 N -0.51 -15.18 10.36 -195.84 -2.03 -17.21 16 27 C 0.10 3.01 10.86 84.67 0.92 3.93 16 28 N -0.52 -18.35 8.54 -182.42 -1.56 -19.91 16 29 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.16 3.89 7.63 -2.91 -0.02 3.87 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 1.57 8.10 -2.39 -0.02 1.55 16 35 H 0.09 1.51 8.10 -2.39 -0.02 1.49 16 36 H 0.14 5.00 6.02 -2.91 -0.02 4.98 16 37 H 0.04 1.79 7.13 -2.39 -0.02 1.77 16 38 H 0.04 1.57 5.40 -2.39 -0.01 1.55 16 39 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 40 H 0.08 2.85 8.02 -2.39 -0.02 2.83 16 41 H 0.09 3.10 7.24 -2.39 -0.02 3.08 16 42 H 0.14 3.79 7.76 -2.91 -0.02 3.77 16 43 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 44 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 45 H 0.15 4.62 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -68.64 388.11 5.26 -63.37 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.96 Total: 25.46 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 7.79 Total: 12.18 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -5.11 Total: -117.56 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.26 Total: -25.54 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 1.88 Total: 42.09 kcal Total: -68.64 5.26 -63.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164010227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.655 kcal (2) G-P(sol) polarization free energy of solvation -68.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds