Wall clock time and date at job start Sat Apr 11 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42888 * 1 3 3 C 1.35496 * 117.00789 * 2 1 4 4 C 1.39166 * 119.53374 * 180.02562 * 3 2 1 5 5 C 1.37954 * 119.26359 * 179.97438 * 4 3 2 6 6 C 1.50698 * 120.81576 * 180.02562 * 5 4 3 7 7 C 1.40280 * 118.35950 * 359.97438 * 5 4 3 8 8 C 1.47622 * 120.49671 * 180.29179 * 7 5 4 9 9 O 1.21576 * 120.00060 * 307.31516 * 8 7 5 10 10 N 1.34771 * 119.99435 * 127.31233 * 8 7 5 11 11 C 1.46500 * 120.00700 * 5.24556 * 10 8 7 12 12 C 1.50700 * 109.47009 * 95.97167 * 11 10 8 13 13 H 1.07997 * 120.00270 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99831 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99938 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99939 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47073 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47365 * 120.00126 * 16 14 12 19 19 H 1.48507 * 109.47091 * 240.00169 * 16 14 12 20 20 C 1.46502 * 119.99788 * 185.24578 * 10 8 7 21 21 C 1.50701 * 109.47162 * 89.99804 * 20 10 8 22 22 C 1.38677 * 120.42094 * 269.72093 * 21 20 10 23 23 C 1.38623 * 118.41914 * 179.78148 * 22 21 20 24 24 C 1.38227 * 119.16343 * 0.52065 * 23 22 21 25 25 N 1.31854 * 120.76244 * 359.71804 * 24 23 22 26 26 C 1.31891 * 121.72833 * 0.02562 * 25 24 23 27 27 C 1.39523 * 119.00164 * 0.02562 * 7 5 4 28 28 N 1.31660 * 120.63072 * 359.97438 * 27 7 5 29 29 H 1.09001 * 109.47931 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47135 * 300.00639 * 1 2 3 31 31 H 1.09005 * 109.47085 * 60.00146 * 1 2 3 32 32 H 1.08001 * 120.36440 * 0.02562 * 4 3 2 33 33 H 1.09005 * 109.47479 * 273.98392 * 6 5 4 34 34 H 1.09002 * 109.47536 * 33.98759 * 6 5 4 35 35 H 1.09005 * 109.46800 * 153.98620 * 6 5 4 36 36 H 1.08995 * 109.47409 * 215.97662 * 11 10 8 37 37 H 1.08999 * 109.46572 * 335.97401 * 11 10 8 38 38 H 0.97002 * 120.00074 * 180.02562 * 15 14 12 39 39 H 1.09002 * 109.47291 * 210.00093 * 20 10 8 40 40 H 1.09003 * 109.46811 * 329.99854 * 20 10 8 41 41 H 1.08001 * 120.78465 * 0.02876 * 22 21 20 42 42 H 1.07999 * 120.41782 * 180.22036 * 23 22 21 43 43 H 1.07994 * 119.62123 * 179.74829 * 24 23 22 44 44 H 1.07988 * 119.61793 * 179.97438 * 26 25 24 45 45 H 1.08001 * 119.68139 * 179.97438 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2072 0.0000 4 6 3.4345 1.2685 -0.0005 5 6 4.0552 2.5006 -0.0011 6 6 5.5583 2.6077 -0.0023 7 6 3.2525 3.6510 -0.0016 8 6 3.8670 4.9932 -0.0087 9 8 4.7039 5.2831 0.8243 10 7 3.5003 5.8972 -0.9385 11 6 2.4118 5.5902 -1.8697 12 6 1.1239 6.1717 -1.3461 13 1 1.1168 6.7152 -0.4129 14 6 -0.0457 6.0089 -2.0579 15 7 -0.0374 5.3457 -3.1936 16 14 -1.6420 6.7303 -1.4093 17 1 -1.3846 7.4240 -0.1217 18 1 -2.1836 7.7000 -2.3950 19 1 -2.6271 5.6397 -1.1952 20 6 4.1903 7.1871 -1.0182 21 6 5.3637 7.0720 -1.9568 22 6 6.6126 6.7056 -1.4781 23 6 7.6618 6.6079 -2.3788 24 6 7.4325 6.8876 -3.7129 25 7 6.2325 7.2381 -4.1319 26 6 5.2101 7.3362 -3.3045 27 6 1.8647 3.5076 -0.0010 28 7 1.3139 2.3117 -0.0005 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.0210 0.3616 -0.0014 33 1 5.9267 2.5624 1.0227 34 1 5.9810 1.7836 -0.5770 35 1 5.8547 3.5548 -0.4533 36 1 2.6353 6.0220 -2.8451 37 1 2.3099 4.5092 -1.9656 38 1 -0.8601 5.2315 -3.6946 39 1 3.5011 7.9456 -1.3895 40 1 4.5443 7.4716 -0.0273 41 1 6.7632 6.4974 -0.4291 42 1 8.6471 6.3217 -2.0416 43 1 8.2456 6.8179 -4.4203 44 1 4.2419 7.6265 -3.6845 45 1 1.2362 4.3859 -0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199705521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:43 Heat of formation + Delta-G solvation = 0.100801 kcal Electronic energy + Delta-G solvation = -30119.557416 eV Core-core repulsion = 26102.649442 eV Total energy + Delta-G solvation = -4016.907973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.61557 -39.98984 -38.95568 -37.35114 -35.42369 -33.43992 -33.19452 -32.21913 -31.51280 -30.36859 -28.18704 -27.60413 -26.68914 -26.02208 -23.66545 -23.43970 -22.82095 -22.10900 -21.35429 -19.02241 -17.60301 -17.19354 -17.01360 -16.67152 -16.49601 -15.87696 -15.80308 -15.57956 -15.11583 -14.64849 -14.42127 -14.12941 -13.92595 -13.55809 -13.51355 -13.38161 -12.91054 -12.76835 -12.66032 -12.52880 -12.45424 -12.28879 -11.87003 -11.77546 -11.65642 -11.51675 -11.22193 -11.04304 -10.96703 -10.69122 -10.29759 -9.89830 -9.70139 -9.53101 -9.26950 -9.23881 -9.09397 -8.79019 -8.65581 -8.09307 -7.89795 -6.28734 -4.38584 1.26272 1.32921 1.48361 1.57708 3.17389 3.22063 3.27386 3.29353 3.30969 3.69296 4.11605 4.18435 4.28182 4.64146 4.71044 4.97623 4.99959 5.08731 5.12374 5.14670 5.21465 5.24084 5.31651 5.36863 5.46486 5.50769 5.59092 5.74547 5.77691 5.81012 5.86035 5.95721 6.03017 6.12414 6.16058 6.30698 6.32291 6.50822 6.57511 6.61088 6.82649 6.90249 7.09582 7.36293 7.47432 7.63938 7.91168 8.13158 8.16384 8.25065 8.64884 8.81760 9.30155 10.77063 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008254 B = 0.005115 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3391.575728 B = 5472.374481 C = 7864.157608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.311 6.311 3 C 0.330 3.670 4 C -0.212 4.212 5 C 0.029 3.971 6 C -0.111 4.111 7 C -0.217 4.217 8 C 0.573 3.427 9 O -0.563 6.563 10 N -0.584 5.584 11 C 0.232 3.768 12 C -0.551 4.551 13 H 0.066 0.934 14 C 0.073 3.927 15 N -0.878 5.878 16 Si 0.894 3.106 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.280 1.280 20 C 0.160 3.840 21 C -0.145 4.145 22 C -0.058 4.058 23 C -0.181 4.181 24 C 0.090 3.910 25 N -0.489 5.489 26 C 0.116 3.884 27 C 0.202 3.798 28 N -0.543 5.543 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.139 0.861 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.042 0.958 38 H 0.267 0.733 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.137 0.863 42 H 0.130 0.870 43 H 0.150 0.850 44 H 0.158 0.842 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.852 -3.935 3.394 10.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.218 6.218 3 C 0.152 3.848 4 C -0.233 4.233 5 C 0.022 3.978 6 C -0.167 4.167 7 C -0.223 4.223 8 C 0.361 3.639 9 O -0.444 6.444 10 N -0.312 5.312 11 C 0.113 3.887 12 C -0.589 4.589 13 H 0.084 0.916 14 C -0.132 4.132 15 N -0.514 5.514 16 Si 0.721 3.279 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.206 1.206 20 C 0.037 3.963 21 C -0.149 4.149 22 C -0.085 4.085 23 C -0.201 4.201 24 C -0.067 4.067 25 N -0.197 5.197 26 C -0.041 4.041 27 C 0.046 3.954 28 N -0.266 5.266 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.156 0.844 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.155 0.845 42 H 0.148 0.852 43 H 0.167 0.833 44 H 0.176 0.824 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 8.207 -4.027 2.748 9.546 hybrid contribution -0.354 0.214 0.908 0.997 sum 7.853 -3.813 3.655 9.464 Atomic orbital electron populations 1.22844 0.77319 1.02403 1.02976 1.86132 1.22933 1.25085 1.87685 1.20055 0.89253 0.85000 0.90514 1.20625 0.91767 0.98401 1.12510 1.19978 0.96438 0.90780 0.90646 1.20795 0.89773 1.03036 1.03099 1.20628 0.95442 0.94074 1.12127 1.17892 0.81202 0.83965 0.80809 1.90666 1.35093 1.79783 1.38831 1.48176 1.34929 1.14501 1.33634 1.19609 0.83070 0.97814 0.88231 1.21469 0.92283 1.36877 1.08288 0.91551 1.24940 0.99177 0.94535 0.94547 1.69931 1.28401 1.39216 1.13864 0.86502 0.83156 0.79096 0.79186 1.19446 1.20758 1.20611 1.20154 0.91014 0.86835 0.98335 1.21431 0.96289 1.00600 0.96531 1.21653 0.92015 0.94182 1.00649 1.22098 1.00104 1.03008 0.94899 1.22703 0.94598 0.95316 0.94096 1.67713 0.99979 1.12971 1.39057 1.22831 0.97584 0.94397 0.89281 1.23680 0.91967 0.94574 0.85215 1.67485 1.40152 0.98591 1.20385 0.89041 0.92292 0.91898 0.84356 0.89957 0.91289 0.90864 0.94594 0.94022 0.92335 0.88672 0.89512 0.84515 0.85245 0.83303 0.82446 0.78926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.37 101.05 1.05 1.58 16 2 O -0.31 -4.97 10.46 -18.18 -0.19 -5.16 16 3 C 0.33 5.89 7.49 -16.96 -0.13 5.77 16 4 C -0.21 -3.44 9.74 -39.34 -0.38 -3.82 16 5 C 0.03 0.50 5.94 -103.96 -0.62 -0.12 16 6 C -0.11 -1.56 9.31 36.00 0.34 -1.23 16 7 C -0.22 -4.24 4.81 -104.82 -0.50 -4.74 16 8 C 0.57 11.38 6.23 -12.43 -0.08 11.30 16 9 O -0.56 -11.46 15.43 5.30 0.08 -11.38 16 10 N -0.58 -11.40 2.44 -177.63 -0.43 -11.84 16 11 C 0.23 5.18 4.67 -5.19 -0.02 5.16 16 12 C -0.55 -13.11 7.03 -34.44 -0.24 -13.35 16 13 H 0.07 1.59 7.81 -52.49 -0.41 1.18 16 14 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 15 N -0.88 -23.09 13.29 55.43 0.74 -22.36 16 16 Si 0.89 19.56 29.54 -169.99 -5.02 14.54 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 C 0.16 2.70 5.62 -5.19 -0.03 2.67 16 21 C -0.15 -2.29 5.48 -104.48 -0.57 -2.86 16 22 C -0.06 -0.84 9.86 -39.28 -0.39 -1.23 16 23 C -0.18 -2.26 10.11 -39.44 -0.40 -2.66 16 24 C 0.09 1.19 11.18 -17.55 -0.20 1.00 16 25 N -0.49 -7.81 10.36 -13.26 -0.14 -7.94 16 26 C 0.12 1.88 10.86 -17.55 -0.19 1.69 16 27 C 0.20 4.15 8.78 -17.15 -0.15 4.00 16 28 N -0.54 -10.77 9.18 -12.97 -0.12 -10.89 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 31 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 32 H 0.14 1.84 8.06 -52.49 -0.42 1.41 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 35 H 0.07 1.14 6.71 -51.93 -0.35 0.79 16 36 H 0.04 0.85 8.12 -51.93 -0.42 0.43 16 37 H 0.04 1.02 5.55 -51.93 -0.29 0.73 16 38 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 39 H 0.10 1.55 8.02 -51.93 -0.42 1.14 16 40 H 0.09 1.43 7.31 -51.93 -0.38 1.05 16 41 H 0.14 1.93 7.97 -52.49 -0.42 1.52 16 42 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 43 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.16 2.51 8.06 -52.49 -0.42 2.09 16 45 H 0.19 4.27 5.26 -52.49 -0.28 3.99 16 LS Contribution 382.88 15.07 5.77 5.77 Total: -1.00 -28.64 382.88 -7.82 -36.46 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.89 Total: 7.93 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -2.62 Total: 4.87 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: 0.05 Total: -53.03 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.11 Total: -16.54 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.64 -7.82 -36.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199705521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.560 kcal (2) G-P(sol) polarization free energy of solvation -28.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds