Wall clock time and date at job start Sat Apr 11 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 111.81035 * 2 1 4 4 C 1.57017 * 112.08876 * 233.16532 * 2 1 3 5 5 H 1.08997 * 117.07142 * 64.12891 * 4 2 1 6 6 C 1.55978 * 100.60204 * 297.40025 * 4 2 1 7 7 C 1.54606 * 104.46857 * 325.66821 * 6 4 2 8 8 C 1.55924 * 104.58384 * 0.33268 * 7 6 4 9 9 C 1.53003 * 115.85317 * 159.96122 * 8 7 6 10 10 S 1.81396 * 109.46850 * 61.01337 * 9 8 7 11 11 O 1.42104 * 110.54698 * 68.37607 * 10 9 8 12 12 O 1.42098 * 110.54730 * 291.62572 * 10 9 8 13 13 N 1.65604 * 104.44849 * 180.02562 * 10 9 8 14 14 C 1.47067 * 136.05274 * 269.62928 * 13 10 9 15 15 C 1.53503 * 87.98291 * 207.37642 * 14 13 10 16 16 C 1.50705 * 114.20461 * 220.34453 * 15 14 13 17 17 H 1.08000 * 119.99726 * 93.59837 * 16 15 14 18 18 C 1.37873 * 119.99976 * 273.59862 * 16 15 14 19 19 N 1.31519 * 120.00089 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99825 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47337 * 89.99938 * 20 18 16 22 22 H 1.48507 * 109.47101 * 210.00018 * 20 18 16 23 23 H 1.48504 * 109.47204 * 329.99508 * 20 18 16 24 24 C 1.47066 * 136.06141 * 89.99812 * 13 10 9 25 25 C 1.53524 * 104.55763 * 288.73475 * 8 7 6 26 26 O 1.20768 * 127.32995 * 250.91798 * 25 8 7 27 27 C 1.54050 * 104.43069 * 70.67597 * 25 8 7 28 28 H 1.09002 * 109.47173 * 293.16983 * 1 2 3 29 29 H 1.09007 * 109.47189 * 53.17024 * 1 2 3 30 30 H 1.09001 * 109.47426 * 173.16872 * 1 2 3 31 31 H 1.09000 * 109.47402 * 186.83287 * 3 2 1 32 32 H 1.09008 * 109.46761 * 306.83405 * 3 2 1 33 33 H 1.08994 * 109.47429 * 66.83236 * 3 2 1 34 34 H 1.09007 * 110.43334 * 206.92062 * 6 4 2 35 35 H 1.09002 * 110.44047 * 84.41920 * 6 4 2 36 36 H 1.08999 * 110.41306 * 241.55723 * 7 6 4 37 37 H 1.08996 * 110.41790 * 119.10708 * 7 6 4 38 38 H 1.08996 * 109.46585 * 301.01460 * 9 8 7 39 39 H 1.08997 * 109.47317 * 181.01147 * 9 8 7 40 40 H 1.09003 * 113.46750 * 322.15288 * 14 13 10 41 41 H 1.09000 * 113.47312 * 92.59733 * 14 13 10 42 42 H 1.08998 * 114.20497 * 87.52255 * 15 14 13 43 43 H 0.96998 * 119.99623 * 179.97438 * 19 18 16 44 44 H 1.09001 * 113.46506 * 267.40641 * 24 13 10 45 45 H 1.09003 * 113.46351 * 37.78014 * 24 13 10 46 46 H 1.09006 * 110.03947 * 241.10830 * 27 25 8 47 47 H 1.08992 * 110.59020 * 118.97291 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0984 1.4205 0.0000 4 6 2.1204 -0.8722 -1.1645 5 1 1.9145 -0.5443 -2.1833 6 6 1.5746 -2.2801 -0.7736 7 6 1.5800 -2.2810 0.7724 8 6 2.1200 -0.8716 1.1639 9 6 1.7985 -0.4051 2.5852 10 16 2.5367 -1.5533 3.7799 11 8 3.9543 -1.4597 3.7511 12 8 1.8846 -2.8148 3.7277 13 7 2.1161 -0.9378 5.2586 14 6 2.7041 0.0101 6.2171 15 6 1.9577 -0.7372 7.3311 16 6 1.3595 0.1602 8.3837 17 1 0.3341 0.4874 8.2950 18 6 2.1213 0.5634 9.4598 19 7 3.3701 0.1652 9.5675 20 14 1.3795 1.6751 10.7649 21 1 0.7623 0.8447 11.8300 22 1 2.4449 2.5251 11.3549 23 1 0.3419 2.5395 10.1474 24 6 0.9936 -1.1034 6.1943 25 6 3.6094 -0.9126 0.7939 26 8 4.5511 -0.9434 1.5494 27 6 3.6225 -0.9115 -0.7465 28 1 -0.3634 0.4043 0.9448 29 1 -0.3634 0.6161 -0.8226 30 1 -0.3634 -1.0204 -0.1222 31 1 3.1807 1.3788 -0.1223 32 1 1.6614 1.9867 -0.8226 33 1 1.8581 1.9080 0.9447 34 1 2.2299 -3.0623 -1.1570 35 1 0.5606 -2.4134 -1.1507 36 1 2.2423 -3.0602 1.1498 37 1 0.5695 -2.4210 1.1562 38 1 0.7176 -0.3815 2.7240 39 1 2.2067 0.5934 2.7410 40 1 3.7887 -0.0670 6.2940 41 1 2.3626 1.0359 6.0783 42 1 2.5041 -1.5850 7.7443 43 1 3.9061 0.4492 10.3244 44 1 0.1965 -0.3742 6.0492 45 1 0.6231 -2.1269 6.2508 46 1 4.0954 -1.8212 -1.1167 47 1 4.1445 -0.0327 -1.1248 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258978620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:53 Heat of formation + Delta-G solvation = -61.106113 kcal Electronic energy + Delta-G solvation = -29541.465426 eV Core-core repulsion = 25625.054522 eV Total energy + Delta-G solvation = -3916.410904 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.73914 -38.19442 -37.99954 -36.49315 -35.35968 -32.59300 -32.50351 -32.16794 -30.28967 -28.32535 -26.90624 -26.12899 -24.90583 -24.45908 -23.99688 -21.66692 -19.86956 -19.39748 -18.42733 -17.86573 -17.01248 -16.59847 -16.27934 -16.03147 -15.95828 -15.44924 -15.28473 -14.57599 -14.42863 -14.21261 -13.88719 -13.68713 -13.47483 -13.11740 -12.92334 -12.83269 -12.73389 -12.55536 -12.35500 -12.08411 -11.72216 -11.67802 -11.58487 -11.54481 -11.49379 -11.42636 -11.31587 -11.24225 -11.14736 -10.94028 -10.75012 -10.59646 -10.55459 -10.23361 -10.14724 -9.30891 -9.17991 -9.02425 -8.54917 -8.13699 -6.11163 -4.17165 0.67504 1.82093 3.15923 3.27254 3.34761 3.36414 3.56452 3.81045 3.98673 4.12697 4.33087 4.36747 4.42849 4.59418 4.62245 4.71936 4.77153 4.88749 4.97589 5.01483 5.09032 5.17749 5.25205 5.32598 5.37637 5.45638 5.48027 5.53667 5.59444 5.64094 5.69494 5.72679 5.78459 5.86777 5.91939 5.98124 6.07265 6.23237 6.27390 6.41298 6.49520 6.78412 6.96353 7.37702 7.56599 7.67253 7.87092 8.26179 8.86448 9.48494 10.98336 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021858 B = 0.003095 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.673915 B = 9044.425674 C = 9247.382236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.046 4.046 3 C -0.147 4.147 4 C -0.088 4.088 5 H 0.114 0.886 6 C -0.122 4.122 7 C -0.127 4.127 8 C -0.110 4.110 9 C -0.615 4.615 10 S 2.614 3.386 11 O -0.928 6.928 12 O -0.963 6.963 13 N -1.040 6.040 14 C 0.124 3.876 15 C 0.039 3.961 16 C -0.518 4.518 17 H 0.063 0.937 18 C 0.067 3.933 19 N -0.883 5.883 20 Si 0.895 3.105 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.118 3.882 25 C 0.338 3.662 26 O -0.384 6.384 27 C -0.171 4.171 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.264 0.736 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.098 0.902 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.770 0.398 -23.656 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.047 4.047 3 C -0.204 4.204 4 C -0.106 4.106 5 H 0.132 0.868 6 C -0.159 4.159 7 C -0.164 4.164 8 C -0.113 4.113 9 C -0.740 4.740 10 S 2.708 3.292 11 O -0.918 6.918 12 O -0.954 6.954 13 N -0.880 5.880 14 C -0.001 4.001 15 C 0.017 3.983 16 C -0.557 4.557 17 H 0.082 0.918 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.723 3.277 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.007 4.007 25 C 0.208 3.792 26 O -0.251 6.251 27 C -0.209 4.209 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.116 0.884 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.488 -0.480 -23.540 23.968 hybrid contribution -0.777 1.374 0.419 1.633 sum -5.265 0.894 -23.120 23.729 Atomic orbital electron populations 1.21760 0.92909 1.02672 1.02300 1.22382 0.95920 0.94075 0.92299 1.21823 1.01002 0.94876 1.02655 1.23609 0.93210 0.95384 0.98404 0.86758 1.22724 1.02058 0.96623 0.94513 1.22790 1.03227 0.93662 0.96748 1.23152 0.96608 0.98283 0.93243 1.30495 1.14454 1.19222 1.09834 1.05001 0.75280 0.75575 0.73373 1.93664 1.26379 1.86633 1.85157 1.93532 1.77916 1.37704 1.86229 1.60297 1.36460 1.60344 1.30940 1.23108 0.98901 0.92076 0.86006 1.20385 0.91969 0.96274 0.89632 1.20966 0.98383 1.30155 1.06152 0.91849 1.25056 0.94833 0.96022 0.97753 1.69970 1.07364 1.44149 1.30494 0.86552 0.78845 0.80563 0.81761 1.20524 1.21199 1.19780 1.22881 0.90010 0.99836 0.87992 1.26048 0.89824 0.71192 0.92157 1.90745 1.42793 1.33466 1.58094 1.23471 0.98384 1.04555 0.94466 0.92044 0.92004 0.91494 0.92294 0.91657 0.91847 0.90871 0.90445 0.90627 0.89040 0.84761 0.85000 0.91800 0.91399 0.91246 0.92607 0.91304 0.92126 0.88405 0.88235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.46 37.16 0.31 -0.70 16 2 C -0.05 -0.39 0.79 -150.21 -0.12 -0.51 16 3 C -0.15 -1.21 8.52 37.16 0.32 -0.89 16 4 C -0.09 -0.61 4.56 -85.27 -0.39 -1.00 16 5 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 6 C -0.12 -0.91 5.56 -24.29 -0.14 -1.04 16 7 C -0.13 -1.39 4.17 -24.32 -0.10 -1.49 16 8 C -0.11 -1.32 0.46 -150.55 -0.07 -1.39 16 9 C -0.61 -8.33 5.55 37.16 0.21 -8.13 16 10 S 2.61 49.40 5.51 -107.50 -0.59 48.81 16 11 O -0.93 -20.90 14.91 -66.99 -1.00 -21.90 16 12 O -0.96 -19.56 17.02 -57.54 -0.98 -20.54 16 13 N -1.04 -21.15 4.10 -125.18 -0.51 -21.67 16 14 C 0.12 2.79 8.26 -8.50 -0.07 2.72 16 15 C 0.04 0.95 3.79 -91.25 -0.35 0.60 16 16 C -0.52 -13.32 8.82 -34.44 -0.30 -13.62 16 17 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 18 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.88 -24.84 13.26 55.43 0.74 -24.11 16 20 Si 0.90 20.26 29.54 -169.99 -5.02 15.23 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 C 0.12 2.38 8.26 -8.51 -0.07 2.31 16 25 C 0.34 4.57 5.91 -25.91 -0.15 4.41 16 26 O -0.38 -6.98 14.60 -17.77 -0.26 -7.24 16 27 C -0.17 -1.49 5.48 -24.60 -0.13 -1.62 16 28 H 0.06 0.48 7.46 -51.93 -0.39 0.09 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.45 5.40 -51.93 -0.28 0.17 16 31 H 0.06 0.50 5.82 -51.93 -0.30 0.20 16 32 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.06 0.57 7.54 -51.93 -0.39 0.18 16 34 H 0.07 0.49 7.85 -51.92 -0.41 0.08 16 35 H 0.08 0.46 7.21 -51.93 -0.37 0.08 16 36 H 0.08 0.95 7.72 -51.93 -0.40 0.55 16 37 H 0.09 0.94 7.56 -51.93 -0.39 0.55 16 38 H 0.13 1.51 7.49 -51.93 -0.39 1.12 16 39 H 0.13 1.68 7.60 -51.93 -0.39 1.29 16 40 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 42 H 0.07 1.86 8.11 -51.93 -0.42 1.44 16 43 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 44 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.10 0.74 7.84 -51.93 -0.41 0.34 16 47 H 0.10 0.73 7.26 -51.93 -0.38 0.35 16 LS Contribution 372.17 15.07 5.61 5.61 Total: -1.00 -33.44 372.17 -10.60 -44.04 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.42 Total: 0.43 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -1.15 Total: -18.66 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.22 Total: -45.77 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: -2.24 Total: -49.68 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 49.40 SS G_CDS: -0.59 Total: 48.81 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.44 -10.60 -44.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258978620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.070 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds