Wall clock time and date at job start Sat Apr 11 2020 06:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 111.81035 * 2 1 4 4 C 1.57017 * 112.08876 * 233.16532 * 2 1 3 5 5 H 1.08997 * 117.07142 * 64.12891 * 4 2 1 6 6 C 1.55978 * 100.60204 * 297.40025 * 4 2 1 7 7 C 1.54606 * 104.46857 * 325.66821 * 6 4 2 8 8 C 1.55924 * 104.58384 * 0.33268 * 7 6 4 9 9 C 1.53003 * 115.85317 * 159.96122 * 8 7 6 10 10 S 1.81396 * 109.46850 * 61.01337 * 9 8 7 11 11 O 1.42104 * 110.54698 * 68.37607 * 10 9 8 12 12 O 1.42098 * 110.54730 * 291.62572 * 10 9 8 13 13 N 1.65604 * 104.44849 * 180.02562 * 10 9 8 14 14 C 1.47067 * 136.05274 * 269.62928 * 13 10 9 15 15 C 1.53503 * 87.98291 * 207.37642 * 14 13 10 16 16 C 1.50705 * 114.20461 * 220.34453 * 15 14 13 17 17 H 1.08000 * 119.99726 * 93.59837 * 16 15 14 18 18 C 1.37873 * 119.99976 * 273.59862 * 16 15 14 19 19 N 1.31519 * 120.00089 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99825 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47337 * 89.99938 * 20 18 16 22 22 H 1.48507 * 109.47101 * 210.00018 * 20 18 16 23 23 H 1.48504 * 109.47204 * 329.99508 * 20 18 16 24 24 C 1.47066 * 136.06141 * 89.99812 * 13 10 9 25 25 C 1.53524 * 104.55763 * 288.73475 * 8 7 6 26 26 O 1.20768 * 127.32995 * 250.91798 * 25 8 7 27 27 C 1.54050 * 104.43069 * 70.67597 * 25 8 7 28 28 H 1.09002 * 109.47173 * 293.16983 * 1 2 3 29 29 H 1.09007 * 109.47189 * 53.17024 * 1 2 3 30 30 H 1.09001 * 109.47426 * 173.16872 * 1 2 3 31 31 H 1.09000 * 109.47402 * 186.83287 * 3 2 1 32 32 H 1.09008 * 109.46761 * 306.83405 * 3 2 1 33 33 H 1.08994 * 109.47429 * 66.83236 * 3 2 1 34 34 H 1.09007 * 110.43334 * 206.92062 * 6 4 2 35 35 H 1.09002 * 110.44047 * 84.41920 * 6 4 2 36 36 H 1.08999 * 110.41306 * 241.55723 * 7 6 4 37 37 H 1.08996 * 110.41790 * 119.10708 * 7 6 4 38 38 H 1.08996 * 109.46585 * 301.01460 * 9 8 7 39 39 H 1.08997 * 109.47317 * 181.01147 * 9 8 7 40 40 H 1.09003 * 113.46750 * 322.15288 * 14 13 10 41 41 H 1.09000 * 113.47312 * 92.59733 * 14 13 10 42 42 H 1.08998 * 114.20497 * 87.52255 * 15 14 13 43 43 H 0.96998 * 119.99623 * 179.97438 * 19 18 16 44 44 H 1.09001 * 113.46506 * 267.40641 * 24 13 10 45 45 H 1.09003 * 113.46351 * 37.78014 * 24 13 10 46 46 H 1.09006 * 110.03947 * 241.10830 * 27 25 8 47 47 H 1.08992 * 110.59020 * 118.97291 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0984 1.4205 0.0000 4 6 2.1204 -0.8722 -1.1645 5 1 1.9145 -0.5443 -2.1833 6 6 1.5746 -2.2801 -0.7736 7 6 1.5800 -2.2810 0.7724 8 6 2.1200 -0.8716 1.1639 9 6 1.7985 -0.4051 2.5852 10 16 2.5367 -1.5533 3.7799 11 8 3.9543 -1.4597 3.7511 12 8 1.8846 -2.8148 3.7277 13 7 2.1161 -0.9378 5.2586 14 6 2.7041 0.0101 6.2171 15 6 1.9577 -0.7372 7.3311 16 6 1.3595 0.1602 8.3837 17 1 0.3341 0.4874 8.2950 18 6 2.1213 0.5634 9.4598 19 7 3.3701 0.1652 9.5675 20 14 1.3795 1.6751 10.7649 21 1 0.7623 0.8447 11.8300 22 1 2.4449 2.5251 11.3549 23 1 0.3419 2.5395 10.1474 24 6 0.9936 -1.1034 6.1943 25 6 3.6094 -0.9126 0.7939 26 8 4.5511 -0.9434 1.5494 27 6 3.6225 -0.9115 -0.7465 28 1 -0.3634 0.4043 0.9448 29 1 -0.3634 0.6161 -0.8226 30 1 -0.3634 -1.0204 -0.1222 31 1 3.1807 1.3788 -0.1223 32 1 1.6614 1.9867 -0.8226 33 1 1.8581 1.9080 0.9447 34 1 2.2299 -3.0623 -1.1570 35 1 0.5606 -2.4134 -1.1507 36 1 2.2423 -3.0602 1.1498 37 1 0.5695 -2.4210 1.1562 38 1 0.7176 -0.3815 2.7240 39 1 2.2067 0.5934 2.7410 40 1 3.7887 -0.0670 6.2940 41 1 2.3626 1.0359 6.0783 42 1 2.5041 -1.5850 7.7443 43 1 3.9061 0.4492 10.3244 44 1 0.1965 -0.3742 6.0492 45 1 0.6231 -2.1269 6.2508 46 1 4.0954 -1.8212 -1.1167 47 1 4.1445 -0.0327 -1.1248 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258978620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:52 Heat of formation + Delta-G solvation = -83.120194 kcal Electronic energy + Delta-G solvation = -29542.420028 eV Core-core repulsion = 25625.054522 eV Total energy + Delta-G solvation = -3917.365506 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.53331 -39.94969 -39.07447 -38.09843 -36.98408 -34.59269 -33.31498 -32.92785 -31.03736 -30.15636 -27.58469 -27.06451 -26.64778 -26.29033 -24.70126 -22.45658 -21.69042 -20.26778 -19.61346 -19.13911 -18.76099 -18.18307 -17.58333 -17.21866 -16.72814 -16.67895 -16.47319 -16.40001 -15.76658 -15.24733 -15.08464 -14.76278 -14.51499 -14.45881 -14.30855 -13.94841 -13.58230 -13.49292 -13.33648 -13.25515 -13.13730 -13.12572 -13.03409 -12.90288 -12.76323 -12.72737 -12.46925 -12.31906 -12.25017 -12.20654 -12.12208 -11.99256 -11.41935 -11.27578 -11.08631 -11.01533 -10.93870 -10.54223 -10.27778 -9.80798 -8.13237 -6.25919 -0.81398 0.82942 1.49045 1.49321 1.59966 1.62543 2.46883 2.70386 2.81117 2.94562 3.08998 3.19055 3.27710 3.45935 3.62421 3.80421 3.93025 4.04411 4.09055 4.16354 4.22637 4.31305 4.38244 4.40411 4.46314 4.53927 4.57316 4.68488 4.71801 4.78837 4.83327 4.85000 4.91503 5.03235 5.04770 5.07615 5.08556 5.11492 5.16930 5.17646 5.31055 5.42759 5.55030 5.61329 5.83896 5.85123 6.26864 6.40881 6.85278 7.43977 8.97294 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021858 B = 0.003095 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.673915 B = 9044.425674 C = 9247.382236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.034 4.034 3 C -0.152 4.152 4 C -0.068 4.068 5 H 0.156 0.844 6 C -0.118 4.118 7 C -0.135 4.135 8 C -0.132 4.132 9 C -0.581 4.581 10 S 2.606 3.394 11 O -0.975 6.975 12 O -0.986 6.986 13 N -1.049 6.049 14 C 0.132 3.868 15 C 0.015 3.985 16 C -0.523 4.523 17 H 0.078 0.922 18 C 0.011 3.989 19 N -0.928 5.928 20 Si 0.965 3.035 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.256 1.256 24 C 0.131 3.869 25 C 0.323 3.677 26 O -0.448 6.448 27 C -0.169 4.169 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.044 0.956 37 H 0.098 0.902 38 H 0.167 0.833 39 H 0.143 0.857 40 H 0.033 0.967 41 H 0.087 0.913 42 H 0.027 0.973 43 H 0.263 0.737 44 H 0.102 0.898 45 H 0.065 0.935 46 H 0.109 0.891 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.141 2.190 -27.306 28.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.036 4.036 3 C -0.209 4.209 4 C -0.085 4.085 5 H 0.173 0.827 6 C -0.155 4.155 7 C -0.173 4.173 8 C -0.135 4.135 9 C -0.713 4.713 10 S 2.707 3.293 11 O -0.966 6.966 12 O -0.977 6.977 13 N -0.888 5.888 14 C 0.006 3.994 15 C -0.006 4.006 16 C -0.561 4.561 17 H 0.096 0.904 18 C -0.188 4.188 19 N -0.566 5.566 20 Si 0.790 3.210 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.180 1.180 24 C 0.006 3.994 25 C 0.198 3.802 26 O -0.319 6.319 27 C -0.206 4.206 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.063 0.937 37 H 0.116 0.884 38 H 0.185 0.815 39 H 0.161 0.839 40 H 0.051 0.949 41 H 0.105 0.895 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.120 0.880 45 H 0.083 0.917 46 H 0.127 0.873 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.876 1.265 -27.147 28.294 hybrid contribution 0.270 0.753 1.433 1.641 sum -7.606 2.017 -25.714 26.891 Atomic orbital electron populations 1.21827 0.91348 1.03691 1.03009 1.22450 0.96958 0.93655 0.90524 1.21899 1.00773 0.94939 1.03254 1.23749 0.90814 0.94373 0.99603 0.82679 1.22785 1.04009 0.97393 0.91334 1.22907 1.02616 0.91888 0.99882 1.23471 0.96476 1.00433 0.93101 1.30097 1.15621 1.16890 1.08677 1.04909 0.74487 0.76075 0.73819 1.93615 1.29727 1.87428 1.85839 1.93492 1.77757 1.39838 1.86604 1.60109 1.36240 1.60080 1.32392 1.22836 0.96972 0.93158 0.86422 1.20339 0.93751 0.95430 0.91096 1.21352 0.98908 1.29487 1.06389 0.90372 1.25941 0.95088 0.97627 1.00190 1.70132 1.09052 1.46064 1.31360 0.85451 0.78076 0.78611 0.78861 1.20268 1.21604 1.18027 1.22796 0.89799 1.01030 0.85754 1.26973 0.89806 0.68823 0.94614 1.90724 1.44585 1.36448 1.60185 1.23589 1.00721 1.05943 0.90331 0.92676 0.89670 0.90752 0.93096 0.88950 0.92909 0.90155 0.87783 0.93682 0.88378 0.81496 0.83903 0.94858 0.89457 0.95459 0.92856 0.88014 0.91672 0.87278 0.86431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.46 71.98 0.61 -0.73 16 2 C -0.03 -0.44 0.79 -49.40 -0.04 -0.48 16 3 C -0.15 -1.93 8.52 71.98 0.61 -1.32 16 4 C -0.07 -0.60 4.56 -7.33 -0.03 -0.63 16 5 H 0.16 0.30 8.14 -2.39 -0.02 0.29 16 6 C -0.12 -1.28 5.56 32.17 0.18 -1.10 16 7 C -0.14 -2.72 4.17 32.15 0.13 -2.59 16 8 C -0.13 -2.92 0.46 -49.62 -0.02 -2.95 16 9 C -0.58 -15.04 5.55 71.98 0.40 -14.64 16 10 S 2.61 102.25 5.51 -56.49 -0.31 101.94 16 11 O -0.98 -47.26 14.91 -118.61 -1.77 -49.03 16 12 O -0.99 -41.48 17.02 -127.65 -2.17 -43.66 16 13 N -1.05 -43.96 4.10 -549.95 -2.26 -46.21 16 14 C 0.13 6.19 8.26 83.18 0.69 6.88 16 15 C 0.02 0.77 3.79 -11.20 -0.04 0.73 16 16 C -0.52 -27.16 8.82 25.60 0.23 -26.94 16 17 H 0.08 3.74 7.81 -2.91 -0.02 3.72 16 18 C 0.01 0.59 5.46 84.65 0.46 1.05 16 19 N -0.93 -54.48 13.26 21.45 0.28 -54.20 16 20 Si 0.97 41.82 29.54 68.60 2.03 43.85 16 21 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 24 C 0.13 5.30 8.26 83.18 0.69 5.99 16 25 C 0.32 8.66 5.91 31.13 0.18 8.85 16 26 O -0.45 -17.24 14.60 21.25 0.31 -16.93 16 27 C -0.17 -2.47 5.48 31.97 0.18 -2.30 16 28 H 0.05 0.61 7.46 -2.39 -0.02 0.59 16 29 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.07 0.61 5.40 -2.39 -0.01 0.60 16 31 H 0.05 0.73 5.82 -2.39 -0.01 0.72 16 32 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.05 0.79 7.54 -2.39 -0.02 0.77 16 34 H 0.08 0.79 7.85 -2.38 -0.02 0.78 16 35 H 0.10 0.64 7.21 -2.39 -0.02 0.63 16 36 H 0.04 1.16 7.72 -2.39 -0.02 1.14 16 37 H 0.10 1.80 7.56 -2.39 -0.02 1.78 16 38 H 0.17 3.25 7.49 -2.39 -0.02 3.23 16 39 H 0.14 3.48 7.60 -2.39 -0.02 3.46 16 40 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.09 3.71 8.10 -2.39 -0.02 3.69 16 42 H 0.03 1.58 8.11 -2.39 -0.02 1.56 16 43 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 44 H 0.10 3.45 8.10 -2.39 -0.02 3.43 16 45 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.11 1.39 7.84 -2.38 -0.02 1.38 16 47 H 0.12 1.35 7.26 -2.39 -0.02 1.33 16 Total: -1.00 -80.04 372.17 1.30 -78.74 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.97 Total: 15.67 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 4.22 Total: -30.18 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -1.97 Total: -100.41 kcal Atomic # 8 Polarization: -105.98 SS G_CDS: -3.63 Total: -109.61 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: 102.25 SS G_CDS: -0.31 Total: 101.94 kcal Total: -80.04 1.30 -78.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258978620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.378 kcal (2) G-P(sol) polarization free energy of solvation -80.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds