Wall clock time and date at job start Sat Apr 11 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00048 * 2 1 4 4 H 1.48502 * 109.47246 * 269.99612 * 3 2 1 5 5 H 1.48503 * 109.47425 * 29.99844 * 3 2 1 6 6 H 1.48501 * 109.47263 * 150.00142 * 3 2 1 7 7 C 1.37880 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00123 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99687 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47171 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.47515 * 179.97438 * 10 9 7 12 12 C 1.46601 * 124.26967 * 90.00016 * 11 10 9 13 13 C 1.53827 * 106.05271 * 164.49655 * 12 11 10 14 14 F 1.39903 * 112.25407 * 142.31794 * 13 12 11 15 15 C 1.53187 * 110.97251 * 268.74531 * 13 12 11 16 16 N 1.47295 * 107.74295 * 109.84308 * 15 13 12 17 17 C 1.46900 * 111.00284 * 141.32558 * 16 15 13 18 18 C 1.50695 * 109.47422 * 169.99981 * 17 16 15 19 19 N 1.33241 * 125.52657 * 89.99872 * 18 17 16 20 20 C 1.30837 * 109.83014 * 180.02562 * 19 18 17 21 21 N 1.34439 * 108.07576 * 359.97438 * 20 19 18 22 22 H 0.96999 * 126.81999 * 179.97438 * 21 20 19 23 23 N 1.30712 * 125.52764 * 269.69118 * 18 17 16 24 24 C 1.46935 * 107.80418 * 19.21657 * 16 15 13 25 25 C 1.54330 * 105.85707 * 330.01360 * 24 16 15 26 26 F 1.39896 * 112.95805 * 151.39689 * 25 24 16 27 27 C 1.34135 * 124.27739 * 270.04672 * 11 10 9 28 28 O 1.21281 * 124.66200 * 2.29343 * 27 11 10 29 29 H 0.97002 * 119.99748 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47196 * 59.99236 * 9 7 2 31 31 H 1.09002 * 109.47348 * 299.99640 * 9 7 2 32 32 H 1.09006 * 109.47067 * 60.00067 * 10 9 7 33 33 H 1.09002 * 109.47068 * 300.00273 * 10 9 7 34 34 H 1.08997 * 110.13403 * 45.34867 * 12 11 10 35 35 H 1.09005 * 110.13241 * 283.64234 * 12 11 10 36 36 H 1.09006 * 109.80503 * 229.39759 * 15 13 12 37 37 H 1.09001 * 109.80392 * 350.21894 * 15 13 12 38 38 H 1.09009 * 109.46730 * 289.99635 * 17 16 15 39 39 H 1.08994 * 109.47421 * 49.99364 * 17 16 15 40 40 H 1.07998 * 125.96576 * 179.97438 * 20 19 18 41 41 H 1.09001 * 110.69009 * 210.56769 * 24 16 15 42 42 H 1.09003 * 109.47144 * 88.81416 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 1.0996 -5.6460 -1.2100 13 6 0.7337 -7.0704 -0.7589 14 9 -0.3706 -7.5783 -1.4516 15 6 1.9475 -8.0011 -0.8432 16 7 2.3611 -8.3252 0.5328 17 6 2.7819 -9.7287 0.6394 18 6 3.4243 -9.9599 1.9827 19 7 2.7877 -10.3368 3.0908 20 6 3.6402 -10.4454 4.0774 21 7 4.8616 -10.1344 3.6094 22 1 5.6916 -10.1260 4.1112 23 7 4.6974 -9.8288 2.2485 24 6 1.2266 -8.0398 1.4219 25 6 0.4482 -6.8860 0.7552 26 9 -0.9165 -6.8992 1.0624 27 6 1.1347 -5.5842 1.1099 28 8 1.3173 -5.1866 2.2410 29 1 -0.4850 0.8401 0.0004 30 1 0.6246 -2.5570 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 2.8719 -3.6043 0.8906 33 1 2.8719 -3.6043 -0.8894 34 1 1.9214 -5.6785 -1.9253 35 1 0.2323 -5.1591 -1.6558 36 1 1.6763 -8.9148 -1.3722 37 1 2.7618 -7.4995 -1.3662 38 1 1.9121 -10.3776 0.5361 39 1 3.4989 -9.9539 -0.1500 40 1 3.4041 -10.7343 5.0908 41 1 1.5773 -7.7373 2.4087 42 1 0.5950 -8.9247 1.5006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274356244.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:11 Heat of formation + Delta-G solvation = -13.559656 kcal Electronic energy + Delta-G solvation = -30512.257934 eV Core-core repulsion = 25972.820820 eV Total energy + Delta-G solvation = -4539.437114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.50285 -47.43257 -42.41266 -40.60902 -38.13077 -36.11752 -33.96076 -33.07674 -32.13159 -31.34792 -29.92588 -29.42304 -27.09268 -25.83983 -24.88092 -23.22883 -22.48995 -21.43050 -21.07688 -20.48944 -19.62770 -18.68918 -17.64447 -16.75031 -16.55627 -16.18996 -15.99931 -15.85539 -15.69949 -15.24527 -15.09566 -14.86031 -14.64878 -14.42030 -14.13977 -13.93590 -13.89657 -13.79187 -13.09414 -12.92406 -12.79343 -12.59793 -12.42423 -12.26693 -12.16916 -11.88081 -11.59676 -11.26906 -10.96677 -10.75734 -10.73712 -10.46765 -10.37853 -10.06091 -10.04344 -9.94581 -9.51192 -9.18940 -8.90667 -8.39365 -8.26496 -6.03749 -4.08051 1.28248 2.31572 2.43626 2.62443 3.04047 3.30783 3.31636 3.37499 3.41034 3.45891 3.61638 3.69426 3.79991 4.11837 4.22721 4.36057 4.43653 4.52300 4.63149 4.94502 5.01870 5.05879 5.19450 5.27540 5.32372 5.34287 5.45110 5.60396 5.70781 5.85138 5.88759 6.01872 6.32483 6.35395 6.37596 6.67069 6.68708 6.74019 7.24853 7.60807 7.74483 7.74612 7.93913 8.24309 8.36456 8.98222 9.56291 11.07617 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.014334 B = 0.003005 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.960962 B = 9316.816281 C =10306.310236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.009 3.991 10 C 0.131 3.869 11 N -0.592 5.592 12 C 0.092 3.908 13 C 0.078 3.922 14 F -0.170 7.170 15 C 0.035 3.965 16 N -0.511 5.511 17 C 0.146 3.854 18 C 0.232 3.768 19 N -0.539 5.539 20 C 0.263 3.737 21 N -0.484 5.484 22 H 0.442 0.558 23 N -0.293 5.293 24 C 0.042 3.958 25 C 0.063 3.937 26 F -0.156 7.156 27 C 0.519 3.481 28 O -0.500 6.500 29 H 0.262 0.738 30 H 0.019 0.981 31 H 0.023 0.977 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.223 0.777 41 H 0.109 0.891 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.193 -25.295 1.074 26.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.076 0.924 9 C -0.029 4.029 10 C 0.012 3.988 11 N -0.325 5.325 12 C -0.032 4.032 13 C 0.057 3.943 14 F -0.150 7.150 15 C -0.093 4.093 16 N -0.236 5.236 17 C 0.016 3.984 18 C -0.051 4.051 19 N -0.268 5.268 20 C -0.036 4.036 21 N -0.202 5.202 22 H 0.288 0.712 23 N -0.123 5.123 24 C -0.086 4.086 25 C 0.040 3.960 26 F -0.136 7.136 27 C 0.301 3.699 28 O -0.374 6.374 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.041 0.959 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.131 0.869 38 H 0.092 0.908 39 H 0.125 0.875 40 H 0.239 0.761 41 H 0.128 0.872 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.705 -24.441 1.264 25.658 hybrid contribution -0.130 0.383 0.413 0.578 sum 7.574 -24.058 1.677 25.278 Atomic orbital electron populations 1.69975 1.06127 1.26804 1.50041 1.25007 0.94855 0.99361 0.95027 0.86534 0.79843 0.83193 0.78076 1.20603 1.21169 1.19760 1.21040 0.93039 0.90504 1.51688 0.92354 1.19444 0.94438 0.90947 0.98033 1.21972 0.94978 0.79762 1.02103 1.48234 1.55941 1.23442 1.04854 1.22404 1.03071 0.88353 0.89391 1.22422 0.85306 0.95805 0.90717 1.92939 1.54026 1.88092 1.79942 1.23163 0.95642 0.99276 0.91228 1.63360 1.34693 1.20758 1.04812 1.20446 0.99591 0.88424 0.89948 1.23858 0.87983 0.97405 0.95868 1.70412 1.34043 1.23483 0.98848 1.26102 0.81314 0.95732 1.00428 1.48166 1.10965 1.52699 1.08358 0.71193 1.78033 1.19006 1.23350 0.91924 1.23163 0.91104 0.95987 0.98359 1.22539 0.79430 0.98962 0.95098 1.92946 1.29496 1.97368 1.93770 1.20008 0.79809 0.84382 0.85653 1.90747 1.55811 1.69734 1.21080 0.92844 0.96257 0.95888 0.90499 0.90874 0.88033 0.88817 0.90217 0.86867 0.90812 0.87451 0.76060 0.87240 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.01 0.24 5.30 -27.89 -0.15 0.09 16 10 C 0.13 2.70 5.84 -4.05 -0.02 2.67 16 11 N -0.59 -10.77 2.92 -173.00 -0.50 -11.27 16 12 C 0.09 1.27 6.68 -3.56 -0.02 1.24 16 13 C 0.08 0.98 1.84 -88.94 -0.16 0.82 16 14 F -0.17 -2.22 16.78 2.25 0.04 -2.18 16 15 C 0.03 0.33 6.26 -3.51 -0.02 0.31 16 16 N -0.51 -5.82 5.11 -234.71 -1.20 -7.02 16 17 C 0.15 1.35 5.26 -4.98 -0.03 1.32 16 18 C 0.23 2.58 7.15 -156.86 -1.12 1.46 16 19 N -0.54 -5.77 11.19 -11.97 -0.13 -5.90 16 20 C 0.26 1.86 13.13 -90.64 -1.19 0.67 16 21 N -0.48 -3.56 7.45 29.53 0.22 -3.34 16 22 H 0.44 1.61 8.96 -182.34 -1.63 -0.02 16 23 N -0.29 -3.29 12.80 32.42 0.41 -2.87 16 24 C 0.04 0.57 5.35 -3.11 -0.02 0.56 16 25 C 0.06 1.00 1.88 -89.59 -0.17 0.83 16 26 F -0.16 -2.73 16.91 2.25 0.04 -2.69 16 27 C 0.52 10.16 7.05 -10.94 -0.08 10.08 16 28 O -0.50 -11.69 17.26 5.56 0.10 -11.60 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.67 7.93 -51.93 -0.41 1.26 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.10 1.05 7.46 -51.93 -0.39 0.67 16 35 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.08 0.57 7.63 -51.93 -0.40 0.17 16 37 H 0.11 0.92 7.32 -51.93 -0.38 0.54 16 38 H 0.07 0.59 7.81 -51.92 -0.41 0.19 16 39 H 0.11 0.78 8.08 -51.93 -0.42 0.36 16 40 H 0.22 0.46 8.06 -52.49 -0.42 0.03 16 41 H 0.11 1.72 7.72 -51.93 -0.40 1.32 16 42 H 0.08 0.93 7.63 -51.93 -0.40 0.54 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -37.95 362.07 -9.74 -47.68 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -6.49 Total: -3.22 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -3.39 Total: 6.64 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.47 Total: -56.72 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.10 Total: -11.60 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.08 Total: -4.88 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.95 -9.74 -47.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274356244.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.123 kcal (2) G-P(sol) polarization free energy of solvation -37.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds