Wall clock time and date at job start Sat Apr 11 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38263 * 119.99422 * 2 1 4 4 C 1.38213 * 119.99330 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00611 * 359.97438 * 4 3 2 6 6 C 1.38218 * 119.99578 * 359.74507 * 5 4 3 7 7 C 1.38211 * 120.00181 * 179.97438 * 2 1 3 8 8 C 1.50691 * 119.99955 * 0.02562 * 7 2 1 9 9 H 1.08998 * 109.47302 * 34.27181 * 8 7 2 10 10 C 1.53012 * 109.47075 * 274.27299 * 8 7 2 11 11 O 1.42896 * 109.47099 * 305.00030 * 10 8 7 12 12 N 1.46495 * 109.47134 * 154.27810 * 8 7 2 13 13 C 1.34784 * 120.00168 * 207.63606 * 12 8 7 14 14 O 1.21584 * 119.99583 * 359.97438 * 13 12 8 15 15 N 1.34773 * 120.00239 * 180.02562 * 13 12 8 16 16 C 1.39457 * 120.00126 * 185.20676 * 15 13 12 17 17 C 1.38641 * 119.65264 * 174.50539 * 16 15 13 18 18 C 1.40816 * 118.67775 * 179.97438 * 17 16 15 19 19 C 1.41544 * 120.99912 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99906 * 148.84090 * 19 18 17 21 21 C 1.40027 * 120.00152 * 328.84802 * 19 18 17 22 22 N 1.30743 * 119.99966 * 347.42166 * 21 19 18 23 23 Si 1.86803 * 120.00124 * 167.42284 * 21 19 18 24 24 H 1.48498 * 109.46881 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47187 * 119.99826 * 23 21 19 26 26 H 1.48500 * 109.47197 * 239.99676 * 23 21 19 27 27 C 1.41166 * 118.00350 * 0.02562 * 18 17 16 28 28 C 1.36587 * 119.13088 * 359.97438 * 27 18 17 29 29 N 1.32077 * 121.25253 * 359.74523 * 28 27 18 30 30 H 1.09000 * 109.46887 * 270.02151 * 1 2 3 31 31 H 1.08993 * 109.46764 * 30.02597 * 1 2 3 32 32 H 1.09002 * 109.46236 * 150.02496 * 1 2 3 33 33 H 1.07995 * 120.00190 * 359.97438 * 3 2 1 34 34 H 1.08005 * 119.99532 * 180.02562 * 4 3 2 35 35 H 1.07994 * 119.99944 * 180.02562 * 5 4 3 36 36 H 1.07995 * 119.99618 * 180.27037 * 6 5 4 37 37 H 1.09000 * 109.46819 * 185.00248 * 10 8 7 38 38 H 1.08996 * 109.46792 * 65.00063 * 10 8 7 39 39 H 0.96697 * 113.99984 * 179.97438 * 11 10 8 40 40 H 0.96997 * 120.00605 * 27.62536 * 12 8 7 41 41 H 0.97004 * 119.99955 * 5.19329 * 15 13 12 42 42 H 1.08003 * 120.65556 * 0.02562 * 17 16 15 43 43 H 0.97003 * 119.99932 * 180.02562 * 22 21 19 44 44 H 1.08003 * 120.43366 * 179.97438 * 27 18 17 45 45 H 1.07997 * 119.37262 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1975 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2718 0.0002 0.0016 6 6 3.5807 -1.1968 0.0075 7 6 2.1982 -1.1969 0.0005 8 6 1.4447 -2.5020 0.0005 9 1 0.5278 -2.3922 -0.5785 10 6 1.0961 -2.8896 1.4391 11 8 2.2882 -2.9199 2.2265 12 7 2.2784 -3.5471 -0.5983 13 6 1.7022 -4.5996 -1.2123 14 8 0.4905 -4.6818 -1.2686 15 7 2.4692 -5.5614 -1.7628 16 6 1.8779 -6.5930 -2.4914 17 6 2.6782 -7.5138 -3.1501 18 6 2.0595 -8.5474 -3.8793 19 6 2.8290 -9.5136 -4.5705 20 1 2.4537 -10.5194 -4.6883 21 6 4.0770 -9.1653 -5.1016 22 7 4.4262 -7.9078 -5.1800 23 14 5.2429 -10.4973 -5.6981 24 1 4.6158 -11.8288 -5.5005 25 1 5.5302 -10.2941 -7.1408 26 1 6.5099 -10.4280 -4.9266 27 6 0.6486 -8.5905 -3.9011 28 6 -0.0563 -7.6386 -3.2209 29 7 0.5572 -6.6860 -2.5423 30 1 -0.3633 0.0004 1.0277 31 1 -0.3632 0.8897 -0.5142 32 1 -0.3632 -0.8903 -0.5135 33 1 1.6582 2.1327 -0.0004 34 1 4.1204 2.1328 0.0010 35 1 5.3517 0.0003 0.0024 36 1 4.1208 -2.1320 0.0127 37 1 0.6303 -3.8750 1.4471 38 1 0.4043 -2.1572 1.8552 39 1 2.1422 -3.1586 3.1521 40 1 3.2452 -3.4817 -0.5532 41 1 3.4326 -5.5360 -1.6524 42 1 3.7547 -7.4402 -3.1040 43 1 5.2906 -7.6665 -5.5483 44 1 0.1334 -9.3661 -4.4484 45 1 -1.1357 -7.6681 -3.2346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365249554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:57 Heat of formation + Delta-G solvation = -8.920307 kcal Electronic energy + Delta-G solvation = -28857.160178 eV Core-core repulsion = 24839.861020 eV Total energy + Delta-G solvation = -4017.299158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.41360 -39.39702 -38.05305 -36.89586 -34.70143 -34.12238 -33.69888 -33.08180 -31.10904 -30.47903 -28.93830 -27.87549 -27.02600 -25.94954 -23.69453 -22.61055 -21.92612 -21.38329 -20.42516 -19.93232 -18.33095 -17.69527 -17.36588 -16.80242 -15.92875 -15.63553 -15.32848 -15.16492 -14.94401 -14.71214 -14.28424 -14.20062 -14.07843 -14.00205 -13.49791 -13.29929 -13.17908 -12.88658 -12.73511 -12.58480 -12.41702 -12.23317 -12.18353 -11.76057 -11.42784 -11.22508 -11.14018 -10.90759 -10.88442 -10.28561 -10.12385 -10.09638 -9.73832 -9.57798 -9.33634 -8.95734 -8.85486 -8.65103 -7.91383 -7.71690 -7.01011 -6.77265 -4.59194 1.21521 1.28742 2.70256 2.80224 2.99925 3.04011 3.09361 3.24032 3.63214 3.84583 3.88810 4.19827 4.48651 4.54968 4.68850 4.72191 4.78465 4.89527 5.10622 5.14189 5.29760 5.32684 5.42428 5.52914 5.59268 5.62260 5.68419 5.71502 5.92278 5.95261 6.00729 6.32312 6.39123 6.44859 6.54572 6.62049 6.77009 6.80711 6.87640 6.96330 7.10840 7.30120 7.42297 7.48655 7.52010 7.87800 8.12136 8.39446 8.46867 8.73354 8.78629 9.16980 9.71746 10.14288 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015845 B = 0.002535 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.737883 B =11040.733665 C =11971.180963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.078 4.078 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.125 4.125 6 C -0.091 4.091 7 C -0.078 4.078 8 C 0.208 3.792 9 H 0.114 0.886 10 C 0.068 3.932 11 O -0.565 6.565 12 N -0.743 5.743 13 C 0.694 3.306 14 O -0.536 6.536 15 N -0.667 5.667 16 C 0.356 3.644 17 C -0.238 4.238 18 C 0.149 3.851 19 C -0.462 4.462 20 H 0.082 0.918 21 C 0.078 3.922 22 N -0.795 5.795 23 Si 0.911 3.089 24 H -0.260 1.260 25 H -0.274 1.274 26 H -0.272 1.272 27 C -0.279 4.279 28 C 0.118 3.882 29 N -0.550 5.550 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.375 0.625 40 H 0.393 0.607 41 H 0.404 0.596 42 H 0.121 0.879 43 H 0.280 0.720 44 H 0.102 0.898 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.740 15.343 11.793 19.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.079 4.079 3 C -0.139 4.139 4 C -0.138 4.138 5 C -0.143 4.143 6 C -0.110 4.110 7 C -0.079 4.079 8 C 0.102 3.898 9 H 0.131 0.869 10 C -0.011 4.011 11 O -0.370 6.370 12 N -0.402 5.402 13 C 0.394 3.606 14 O -0.407 6.407 15 N -0.314 5.314 16 C 0.130 3.870 17 C -0.264 4.264 18 C 0.141 3.859 19 C -0.494 4.494 20 H 0.100 0.900 21 C -0.140 4.140 22 N -0.421 5.421 23 Si 0.735 3.265 24 H -0.184 1.184 25 H -0.200 1.200 26 H -0.197 1.197 27 C -0.303 4.303 28 C -0.035 4.035 29 N -0.268 5.268 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.221 0.779 40 H 0.229 0.771 41 H 0.238 0.762 42 H 0.139 0.861 43 H 0.091 0.909 44 H 0.121 0.879 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.474 16.257 11.546 19.945 hybrid contribution 1.956 -1.208 -0.232 2.311 sum 1.482 15.048 11.314 18.885 Atomic orbital electron populations 1.20931 0.91221 1.03385 1.02440 1.19669 0.96014 0.92366 0.99835 1.20952 0.94260 0.97175 1.01487 1.21103 0.94300 0.97969 1.00434 1.21095 0.99832 0.92434 1.00908 1.20817 0.93476 0.97987 0.98686 1.19633 0.93995 0.93559 1.00727 1.19689 0.94521 0.83480 0.92086 0.86870 1.22620 0.86932 1.00484 0.91064 1.86482 1.32564 1.93161 1.24747 1.45262 1.09586 1.23410 1.61930 1.16067 0.85988 0.79813 0.78770 1.90997 1.11112 1.77109 1.61523 1.42532 1.09596 1.24731 1.54582 1.17936 0.89824 0.87362 0.91927 1.21411 0.99471 1.00468 1.05055 1.17564 0.90757 0.90447 0.87166 1.19549 1.00845 0.97937 1.31052 0.89984 1.25904 0.98088 0.96046 0.93992 1.69776 1.20852 1.17521 1.33980 0.86218 0.79873 0.81656 0.78716 1.18378 1.19958 1.19742 1.21733 0.95164 1.03934 1.09505 1.21501 0.98112 0.90563 0.93365 1.67215 1.08322 1.26182 1.25129 0.91014 0.91346 0.90818 0.86142 0.86277 0.86136 0.86208 0.92353 0.93029 0.77861 0.77138 0.76182 0.86093 0.90904 0.87947 0.85974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 9.49 36.01 0.34 -0.75 16 2 C -0.08 -0.84 5.88 -104.62 -0.62 -1.46 16 3 C -0.12 -1.17 9.70 -39.58 -0.38 -1.55 16 4 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 5 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 6 C -0.09 -1.04 8.93 -39.58 -0.35 -1.39 16 7 C -0.08 -0.94 4.66 -104.63 -0.49 -1.43 16 8 C 0.21 2.75 2.13 -69.08 -0.15 2.60 16 9 H 0.11 1.64 5.48 -51.93 -0.28 1.36 16 10 C 0.07 0.79 6.86 37.16 0.26 1.05 16 11 O -0.56 -6.11 12.83 -35.23 -0.45 -6.56 16 12 N -0.74 -10.99 4.92 -59.81 -0.29 -11.28 16 13 C 0.69 13.58 8.51 -86.91 -0.74 12.84 16 14 O -0.54 -12.49 14.22 5.29 0.08 -12.41 16 15 N -0.67 -13.42 5.40 -15.86 -0.09 -13.51 16 16 C 0.36 8.73 7.42 -154.68 -1.15 7.58 16 17 C -0.24 -6.07 8.58 -38.46 -0.33 -6.40 16 18 C 0.15 3.94 5.53 -106.55 -0.59 3.35 16 19 C -0.46 -11.95 9.10 -37.65 -0.34 -12.29 16 20 H 0.08 2.04 7.88 -52.49 -0.41 1.62 16 21 C 0.08 1.90 5.23 -17.34 -0.09 1.81 16 22 N -0.80 -19.92 11.18 55.55 0.62 -19.30 16 23 Si 0.91 18.13 29.58 -169.99 -5.03 13.10 16 24 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 27 C -0.28 -6.90 9.85 -39.07 -0.38 -7.29 16 28 C 0.12 2.87 11.10 -18.04 -0.20 2.67 16 29 N -0.55 -14.17 7.86 -12.76 -0.10 -14.27 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.07 0.72 6.01 -51.93 -0.31 0.41 16 33 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 34 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.28 6.11 -52.49 -0.32 0.96 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.50 8.03 -51.93 -0.42 0.08 16 39 H 0.38 2.54 9.12 45.56 0.42 2.96 16 40 H 0.39 5.00 6.30 -40.82 -0.26 4.75 16 41 H 0.40 6.73 8.72 -40.82 -0.36 6.38 16 42 H 0.12 3.06 6.61 -52.48 -0.35 2.71 16 43 H 0.28 6.36 8.29 -40.82 -0.34 6.03 16 44 H 0.10 2.32 8.06 -52.48 -0.42 1.89 16 45 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 377.58 15.07 5.69 5.69 Total: -1.00 -33.31 377.58 -10.39 -43.70 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -4.81 Total: 18.70 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -6.01 Total: -3.85 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.14 Total: -58.36 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.38 Total: -18.98 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.31 -10.39 -43.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365249554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.781 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds