Wall clock time and date at job start Sat Apr 11 2020 06:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38259 * 120.00146 * 2 1 4 4 C 1.38220 * 120.00162 * 179.78764 * 3 2 1 5 5 C 1.38258 * 119.99504 * 0.44031 * 4 3 2 6 6 C 1.38211 * 120.00200 * 359.81326 * 5 4 3 7 7 C 1.38209 * 120.00172 * 180.27433 * 2 1 3 8 8 C 1.50706 * 119.99629 * 359.97438 * 7 2 1 9 9 H 1.08997 * 109.47605 * 325.00323 * 8 7 2 10 10 C 1.53003 * 109.46663 * 85.00551 * 8 7 2 11 11 O 1.42898 * 109.47605 * 54.99714 * 10 8 7 12 12 N 1.46501 * 109.46970 * 205.00041 * 8 7 2 13 13 C 1.34782 * 119.99786 * 155.00285 * 12 8 7 14 14 O 1.21575 * 119.99751 * 0.02562 * 13 12 8 15 15 N 1.34774 * 119.99677 * 179.97438 * 13 12 8 16 16 C 1.39465 * 119.99487 * 175.45978 * 15 13 12 17 17 C 1.38647 * 119.64437 * 186.28692 * 16 15 13 18 18 C 1.40824 * 118.67299 * 179.97438 * 17 16 15 19 19 C 1.41542 * 120.99525 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99730 * 201.14676 * 19 18 17 21 21 C 1.40027 * 120.00134 * 21.15460 * 19 18 17 22 22 N 1.30743 * 119.99935 * 12.10479 * 21 19 18 23 23 Si 1.86797 * 119.99930 * 192.09871 * 21 19 18 24 24 H 1.48505 * 109.46801 * 90.00399 * 23 21 19 25 25 H 1.48504 * 109.47305 * 209.99773 * 23 21 19 26 26 H 1.48491 * 109.47459 * 330.00387 * 23 21 19 27 27 C 1.41165 * 118.00465 * 0.02562 * 18 17 16 28 28 C 1.36591 * 119.12847 * 359.97438 * 27 18 17 29 29 N 1.32072 * 121.25653 * 359.74623 * 28 27 18 30 30 H 1.08995 * 109.47033 * 269.72776 * 1 2 3 31 31 H 1.09001 * 109.47286 * 149.72415 * 1 2 3 32 32 H 1.09001 * 109.46798 * 29.72581 * 1 2 3 33 33 H 1.08003 * 119.99653 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.00175 * 180.27685 * 4 3 2 35 35 H 1.08001 * 119.99474 * 179.83522 * 5 4 3 36 36 H 1.08001 * 120.00190 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.47094 * 175.00138 * 10 8 7 38 38 H 1.08999 * 109.47009 * 294.99694 * 10 8 7 39 39 H 0.96696 * 114.00460 * 179.97438 * 11 10 8 40 40 H 0.96994 * 120.00147 * 335.00193 * 12 8 7 41 41 H 0.96994 * 120.00528 * 355.45364 * 15 13 12 42 42 H 1.08003 * 120.66438 * 359.97438 * 17 16 15 43 43 H 0.96998 * 120.00099 * 180.02562 * 22 21 19 44 44 H 1.07996 * 120.43378 * 179.97438 * 27 18 17 45 45 H 1.07997 * 119.37243 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0044 5 6 4.2717 0.0000 -0.0003 6 6 3.5806 -1.1970 -0.0056 7 6 2.1981 -1.1969 -0.0057 8 6 1.4445 -2.5020 -0.0114 9 1 0.5340 -2.3985 0.5788 10 6 1.0802 -2.8742 -1.4501 11 8 2.2636 -2.8960 -2.2508 12 7 2.2847 -3.5535 0.5672 13 6 1.7152 -4.6382 1.1290 14 8 0.5043 -4.7443 1.1552 15 7 2.4881 -5.6058 1.6609 16 6 1.8999 -6.6814 2.3257 17 6 2.7011 -7.6029 2.9823 18 6 2.0856 -8.6809 3.6474 19 6 2.8563 -9.6503 4.3327 20 1 2.4387 -10.6247 4.5391 21 6 4.1600 -9.3460 4.7432 22 7 4.5838 -8.1096 4.7105 23 14 5.2936 -10.7066 5.3376 24 1 6.0509 -11.2584 4.1855 25 1 6.2443 -10.1573 6.3375 26 1 4.4868 -11.7855 5.9621 27 6 0.6771 -8.7661 3.6091 28 6 -0.0289 -7.8099 2.9361 29 7 0.5812 -6.8089 2.3277 30 1 -0.3633 -0.0049 1.0276 31 1 -0.3634 -0.8875 -0.5181 32 1 -0.3633 0.8925 -0.5096 33 1 1.6583 2.1326 -0.0004 34 1 4.1205 2.1326 0.0090 35 1 5.3517 0.0000 0.0004 36 1 4.1206 -2.1323 -0.0098 37 1 0.6142 -3.8595 -1.4636 38 1 0.3840 -2.1375 -1.8508 39 1 2.1076 -3.1256 -3.1770 40 1 3.2507 -3.4690 0.5460 41 1 3.4534 -5.5541 1.5812 42 1 3.7759 -7.4962 2.9836 43 1 5.4871 -7.8989 4.9944 44 1 0.1644 -9.5767 4.1055 45 1 -1.1066 -7.8710 2.9047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365249558.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:00 Heat of formation + Delta-G solvation = -8.226177 kcal Electronic energy + Delta-G solvation = -28877.172654 eV Core-core repulsion = 24859.903595 eV Total energy + Delta-G solvation = -4017.269058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.40690 -39.37464 -38.02420 -36.87674 -34.69541 -34.14765 -33.71755 -33.08915 -31.09808 -30.43017 -28.90127 -27.83693 -27.05301 -25.99146 -23.65304 -22.60276 -21.87555 -21.37094 -20.43254 -19.89903 -18.31789 -17.70023 -17.36935 -16.80767 -15.92474 -15.64328 -15.30041 -15.19789 -14.93875 -14.69218 -14.25709 -14.14038 -14.02157 -13.91881 -13.47339 -13.30132 -13.17010 -12.90311 -12.74903 -12.59091 -12.45351 -12.25826 -12.11085 -11.73254 -11.41653 -11.18274 -11.14070 -10.96268 -10.88274 -10.27202 -10.08532 -10.05100 -9.75691 -9.55264 -9.38049 -8.95610 -8.86331 -8.61862 -7.96243 -7.70461 -6.97104 -6.73716 -4.61649 1.21126 1.28839 2.71897 2.82652 3.01563 3.02454 3.05128 3.27469 3.63053 3.84614 3.87283 4.21915 4.49274 4.57683 4.68024 4.71855 4.77755 4.89705 5.07996 5.19615 5.30804 5.34218 5.46055 5.50669 5.58430 5.65797 5.69156 5.74670 5.93020 5.98222 6.01121 6.32467 6.39053 6.44029 6.57594 6.65785 6.78532 6.83834 6.87500 6.95921 7.19230 7.32617 7.47332 7.52533 7.53785 7.90401 8.13631 8.41730 8.49575 8.75751 8.77835 9.20462 9.77159 10.07633 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.002539 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.634465 B =11026.086150 C =11998.021939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.078 4.078 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.092 4.092 7 C -0.078 4.078 8 C 0.211 3.789 9 H 0.110 0.890 10 C 0.067 3.933 11 O -0.564 6.564 12 N -0.743 5.743 13 C 0.694 3.306 14 O -0.536 6.536 15 N -0.666 5.666 16 C 0.354 3.646 17 C -0.250 4.250 18 C 0.139 3.861 19 C -0.449 4.449 20 H 0.081 0.919 21 C 0.074 3.926 22 N -0.790 5.790 23 Si 0.915 3.085 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.261 1.261 27 C -0.285 4.285 28 C 0.119 3.881 29 N -0.554 5.554 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.375 0.625 40 H 0.393 0.607 41 H 0.404 0.596 42 H 0.139 0.861 43 H 0.281 0.719 44 H 0.100 0.900 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.888 15.707 -10.694 19.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.079 4.079 3 C -0.139 4.139 4 C -0.138 4.138 5 C -0.142 4.142 6 C -0.111 4.111 7 C -0.078 4.078 8 C 0.104 3.896 9 H 0.128 0.872 10 C -0.013 4.013 11 O -0.369 6.369 12 N -0.402 5.402 13 C 0.393 3.607 14 O -0.408 6.408 15 N -0.314 5.314 16 C 0.128 3.872 17 C -0.276 4.276 18 C 0.131 3.869 19 C -0.480 4.480 20 H 0.099 0.901 21 C -0.144 4.144 22 N -0.416 5.416 23 Si 0.739 3.261 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.185 1.185 27 C -0.310 4.310 28 C -0.035 4.035 29 N -0.273 5.273 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.221 0.779 40 H 0.229 0.771 41 H 0.238 0.762 42 H 0.157 0.843 43 H 0.092 0.908 44 H 0.119 0.881 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.303 16.594 -10.477 19.627 hybrid contribution 1.872 -1.233 0.212 2.252 sum 1.570 15.361 -10.265 18.541 Atomic orbital electron populations 1.20926 0.91209 1.02946 1.02887 1.19670 0.96007 0.92360 0.99818 1.20953 0.94262 0.97167 1.01493 1.21104 0.94295 0.97968 1.00448 1.21094 0.99837 0.92422 1.00872 1.20821 0.93486 0.98004 0.98765 1.19631 0.93985 0.93534 1.00685 1.19621 0.94266 0.83388 0.92279 0.87189 1.22657 0.87112 1.00576 0.90918 1.86483 1.32790 1.93455 1.24178 1.45264 1.09591 1.21008 1.64373 1.16070 0.85996 0.79844 0.78762 1.90994 1.11228 1.77841 1.60707 1.42528 1.09254 1.22044 1.57550 1.17992 0.89870 0.86826 0.92519 1.21787 1.00669 0.99353 1.05763 1.17585 0.90716 0.90922 0.87687 1.19618 0.97060 1.00004 1.31349 0.90057 1.25982 0.98598 0.96204 0.93624 1.69739 1.18043 1.18739 1.35091 0.86198 0.79605 0.81203 0.79059 1.19228 1.20210 1.18521 1.21639 0.94995 1.03660 1.10657 1.21457 0.98021 0.90119 0.93909 1.67194 1.08601 1.25354 1.26126 0.90690 0.91193 0.91378 0.86139 0.86268 0.86124 0.86185 0.92235 0.93004 0.77868 0.77143 0.76189 0.84340 0.90821 0.88135 0.86119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.22 36.01 0.33 -0.76 16 2 C -0.08 -0.84 5.88 -104.63 -0.62 -1.46 16 3 C -0.12 -1.17 9.70 -39.58 -0.38 -1.55 16 4 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 5 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 6 C -0.09 -1.06 8.98 -39.58 -0.36 -1.41 16 7 C -0.08 -0.93 4.65 -104.62 -0.49 -1.42 16 8 C 0.21 2.81 1.89 -69.08 -0.13 2.68 16 9 H 0.11 1.61 6.43 -51.93 -0.33 1.28 16 10 C 0.07 0.79 6.69 37.16 0.25 1.04 16 11 O -0.56 -6.28 12.87 -35.23 -0.45 -6.73 16 12 N -0.74 -11.12 4.95 -59.81 -0.30 -11.42 16 13 C 0.69 13.72 8.49 -86.92 -0.74 12.99 16 14 O -0.54 -12.61 14.26 5.30 0.08 -12.54 16 15 N -0.67 -13.58 5.40 -15.86 -0.09 -13.66 16 16 C 0.35 8.77 7.42 -154.68 -1.15 7.62 16 17 C -0.25 -6.42 8.67 -38.45 -0.33 -6.75 16 18 C 0.14 3.70 5.65 -106.55 -0.60 3.10 16 19 C -0.45 -11.58 9.15 -37.65 -0.34 -11.92 16 20 H 0.08 2.00 7.88 -52.48 -0.41 1.59 16 21 C 0.07 1.79 5.31 -17.34 -0.09 1.70 16 22 N -0.79 -19.40 10.50 55.55 0.58 -18.82 16 23 Si 0.92 17.96 29.58 -169.99 -5.03 12.93 16 24 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 25 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 26 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 27 C -0.29 -7.09 9.85 -39.07 -0.38 -7.48 16 28 C 0.12 2.90 11.10 -18.04 -0.20 2.70 16 29 N -0.55 -14.42 7.86 -12.75 -0.10 -14.52 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.62 5.38 -51.93 -0.28 0.34 16 32 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.29 6.07 -52.49 -0.32 0.97 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.51 6.82 -51.93 -0.35 0.16 16 39 H 0.38 2.66 9.12 45.56 0.42 3.07 16 40 H 0.39 5.06 6.22 -40.82 -0.25 4.81 16 41 H 0.40 6.85 8.72 -40.82 -0.36 6.49 16 42 H 0.14 3.53 5.81 -52.48 -0.30 3.23 16 43 H 0.28 6.24 8.29 -40.82 -0.34 5.90 16 44 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 45 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -33.18 374.87 -10.40 -43.58 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -4.71 Total: 19.64 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -6.03 Total: -4.11 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.10 Total: -58.42 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.38 Total: -19.27 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.18 -10.40 -43.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365249558.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.351 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds