Wall clock time and date at job start Sat Apr 11 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47251 * 2 1 4 4 C 1.53005 * 109.46873 * 240.00264 * 2 1 3 5 5 C 1.50698 * 109.47162 * 120.00386 * 2 1 3 6 6 O 1.21277 * 120.00105 * 353.30461 * 5 2 1 7 7 N 1.34779 * 119.99777 * 173.30699 * 5 2 1 8 8 C 1.47319 * 122.25309 * 354.79994 * 7 5 2 9 9 S 1.84075 * 102.61879 * 155.26343 * 8 7 5 10 10 C 1.84212 * 93.91215 * 33.34849 * 9 8 7 11 11 C 1.45504 * 122.43017 * 174.73994 * 7 5 2 12 12 H 1.08998 * 108.75311 * 301.88138 * 11 7 5 13 13 C 1.50696 * 108.75579 * 60.10260 * 11 7 5 14 14 O 1.20834 * 120.00112 * 2.45008 * 13 11 7 15 15 O 1.34228 * 120.00300 * 182.44953 * 13 11 7 16 16 C 1.45203 * 117.00534 * 180.02562 * 15 13 11 17 17 C 1.52998 * 109.47420 * 179.97438 * 16 15 13 18 18 C 1.50699 * 115.54976 * 34.18697 * 17 16 15 19 19 H 1.08005 * 120.00386 * 264.76239 * 18 17 16 20 20 C 1.37875 * 119.99985 * 84.75878 * 18 17 16 21 21 N 1.31511 * 120.00104 * 1.93540 * 20 18 17 22 22 Si 1.86804 * 120.00045 * 181.93919 * 20 18 17 23 23 H 1.48496 * 109.47337 * 90.00084 * 22 20 18 24 24 H 1.48499 * 109.47250 * 210.00199 * 22 20 18 25 25 H 1.48499 * 109.46950 * 329.99742 * 22 20 18 26 26 C 1.52999 * 117.49818 * 248.47958 * 17 16 15 27 27 C 1.52994 * 117.50031 * 179.85550 * 17 16 15 28 28 H 1.09000 * 109.47106 * 299.99648 * 1 2 3 29 29 H 1.08996 * 109.47580 * 59.99473 * 1 2 3 30 30 H 1.09006 * 109.47047 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47073 * 172.68406 * 3 2 1 32 32 H 1.08995 * 109.47618 * 292.68992 * 3 2 1 33 33 H 1.09000 * 109.47065 * 52.68507 * 3 2 1 34 34 H 1.09006 * 109.46996 * 299.99678 * 4 2 1 35 35 H 1.08997 * 109.47261 * 60.00054 * 4 2 1 36 36 H 1.09001 * 109.47035 * 180.02562 * 4 2 1 37 37 H 1.08999 * 110.86039 * 36.95106 * 8 7 5 38 38 H 1.08999 * 110.87333 * 273.58166 * 8 7 5 39 39 H 1.08999 * 111.05314 * 209.72934 * 10 9 8 40 40 H 1.09004 * 111.08475 * 85.76510 * 10 9 8 41 41 H 1.09004 * 109.46304 * 299.99774 * 16 15 13 42 42 H 1.08998 * 109.46815 * 59.99108 * 16 15 13 43 43 H 0.97002 * 120.00100 * 179.97438 * 21 20 18 44 44 H 1.09003 * 117.50120 * 0.02562 * 26 17 16 45 45 H 1.09004 * 117.49569 * 145.01979 * 26 17 16 46 46 H 1.08995 * 117.50469 * 214.97636 * 27 17 16 47 47 H 1.08999 * 117.49695 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 8 1.2510 -1.0642 2.0879 7 7 3.3499 -0.9527 1.3779 8 6 4.3288 -0.6467 0.3203 9 16 5.8923 -0.4354 1.2685 10 6 5.4418 -1.6940 2.5359 11 6 3.9056 -1.5328 2.5911 12 1 3.6507 -0.8915 3.4348 13 6 3.2838 -2.8881 2.8091 14 8 2.4989 -3.3294 2.0032 15 8 3.6016 -3.6050 3.8984 16 6 2.9648 -4.9020 4.0430 17 6 3.4474 -5.5660 5.3342 18 6 3.7253 -4.6298 6.4820 19 1 4.7296 -4.2734 6.6572 20 6 2.6973 -4.2283 7.3084 21 7 1.4814 -4.6919 7.1184 22 14 3.0317 -3.0255 8.6980 23 1 2.8466 -1.6367 8.2060 24 1 2.0880 -3.2847 9.8149 25 1 4.4262 -3.1989 9.1780 26 6 4.3346 -6.8055 5.2022 27 6 2.8850 -6.9485 5.6705 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1221 1.4452 0.1309 32 1 1.7874 1.9172 -0.9481 33 1 1.5738 1.9926 0.8173 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1299 -0.7216 -1.2491 37 1 4.0640 0.2744 -0.1989 38 1 4.4122 -1.4750 -0.3832 39 1 5.8950 -1.4594 3.4990 40 1 5.7188 -2.6963 2.2089 41 1 1.8831 -4.7731 4.0826 42 1 3.2248 -5.5313 3.1919 43 1 0.7583 -4.4097 7.7001 44 1 4.5748 -7.1477 4.1955 45 1 5.1196 -6.9440 5.9457 46 1 2.7164 -7.1812 6.7219 47 1 2.1709 -7.3848 4.9721 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079168479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:42 Heat of formation + Delta-G solvation = -70.514566 kcal Electronic energy + Delta-G solvation = -29304.960948 eV Core-core repulsion = 25388.142063 eV Total energy + Delta-G solvation = -3916.818885 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.02334 -39.47153 -36.99782 -36.26263 -35.93876 -35.13639 -31.91863 -31.61044 -28.10221 -27.65806 -27.25982 -26.80257 -25.33044 -24.72309 -22.54175 -21.16418 -20.38182 -19.33860 -19.05235 -17.58213 -17.44433 -16.75041 -16.52156 -15.73553 -15.60433 -15.35452 -14.89044 -14.70782 -14.59763 -14.46924 -14.05261 -14.00515 -13.53693 -13.07309 -13.00150 -12.74068 -12.51705 -12.46321 -12.28381 -12.10454 -12.00792 -11.90787 -11.82482 -11.60656 -11.20237 -11.11831 -10.94240 -10.86542 -10.79736 -10.49825 -10.32630 -10.00035 -9.80086 -9.71443 -9.51920 -8.99763 -8.93220 -8.42408 -8.17208 -8.12120 -6.01822 -4.07234 1.30787 1.66942 2.31001 2.59598 2.71393 3.31623 3.37580 3.38706 3.40488 3.95738 4.24385 4.42271 4.45425 4.55637 4.63534 4.73487 4.82844 4.92593 5.15294 5.22212 5.26293 5.28581 5.33269 5.35232 5.40555 5.44890 5.54440 5.67054 5.68918 5.77635 5.94103 5.96956 5.97986 6.15861 6.18307 6.31210 6.46456 6.66112 6.76275 7.00511 7.01465 7.13688 7.35376 7.50708 7.89532 8.04348 8.32045 8.48609 8.92479 9.58130 11.07753 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012821 B = 0.003663 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.430705 B = 7643.009523 C = 7909.322477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.080 4.080 3 C -0.147 4.147 4 C -0.160 4.160 5 C 0.540 3.460 6 O -0.500 6.500 7 N -0.603 5.603 8 C 0.145 3.855 9 S -0.271 6.271 10 C -0.052 4.052 11 C 0.142 3.858 12 H 0.124 0.876 13 C 0.446 3.554 14 O -0.502 6.502 15 O -0.318 6.318 16 C 0.120 3.880 17 C 0.035 3.965 18 C -0.481 4.481 19 H 0.062 0.938 20 C 0.070 3.930 21 N -0.881 5.881 22 Si 0.891 3.109 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.273 1.273 26 C -0.210 4.210 27 C -0.144 4.144 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.130 0.870 38 H 0.100 0.900 39 H 0.140 0.860 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.039 0.961 43 H 0.260 0.740 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.017 10.789 -16.985 20.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.083 4.083 3 C -0.204 4.204 4 C -0.218 4.218 5 C 0.327 3.673 6 O -0.371 6.371 7 N -0.341 5.341 8 C -0.088 4.088 9 S -0.044 6.044 10 C -0.200 4.200 11 C 0.035 3.965 12 H 0.141 0.859 13 C 0.285 3.715 14 O -0.390 6.390 15 O -0.232 6.232 16 C 0.047 3.953 17 C 0.035 3.965 18 C -0.519 4.519 19 H 0.080 0.920 20 C -0.133 4.133 21 N -0.518 5.518 22 Si 0.718 3.282 23 H -0.206 1.206 24 H -0.213 1.213 25 H -0.198 1.198 26 C -0.247 4.247 27 C -0.181 4.181 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.148 0.852 38 H 0.118 0.882 39 H 0.158 0.842 40 H 0.127 0.873 41 H 0.085 0.915 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.100 0.900 46 H 0.108 0.892 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.111 11.156 -16.787 20.793 hybrid contribution -1.019 -0.293 0.856 1.363 sum 4.091 10.863 -15.931 19.711 Atomic orbital electron populations 1.21672 0.91424 1.03231 1.02170 1.20756 0.98391 0.96106 0.93077 1.22028 1.01358 0.93707 1.03351 1.22320 1.02120 1.01371 0.95978 1.20488 0.79952 0.78428 0.88446 1.90794 1.53702 1.49284 1.43323 1.48130 1.07327 1.63773 1.14869 1.24866 0.86631 1.05408 0.91862 1.88356 1.27565 1.55059 1.33439 1.24465 0.92588 1.00906 1.02087 1.20753 0.93045 0.92355 0.90378 0.85861 1.23411 0.80264 0.87184 0.80597 1.90607 1.32412 1.70493 1.45536 1.86576 1.64125 1.32181 1.40320 1.22718 0.96917 0.78606 0.97087 1.18775 0.98126 0.86932 0.92688 1.20239 0.94562 1.27177 1.09941 0.91976 1.24973 0.95095 0.95889 0.97322 1.69989 1.00147 1.43081 1.38587 0.86615 0.78103 0.81693 0.81745 1.20570 1.21300 1.19781 1.23136 0.94671 1.07199 0.99699 1.22523 0.93245 1.01642 1.00699 0.91643 0.91862 0.91722 0.91721 0.90955 0.91522 0.91491 0.91106 0.91096 0.85231 0.88218 0.84235 0.87258 0.91517 0.94272 0.92996 0.91689 0.90044 0.89240 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 7.79 37.16 0.29 -1.10 16 2 C -0.08 -0.84 0.75 -155.66 -0.12 -0.96 16 3 C -0.15 -1.16 8.23 37.15 0.31 -0.85 16 4 C -0.16 -1.35 8.07 37.16 0.30 -1.05 16 5 C 0.54 8.21 5.66 -10.98 -0.06 8.15 16 6 O -0.50 -10.17 14.44 -14.79 -0.21 -10.38 16 7 N -0.60 -8.20 2.74 -169.39 -0.46 -8.67 16 8 C 0.15 1.40 5.24 60.29 0.32 1.72 16 9 S -0.27 -2.86 23.43 -107.50 -2.52 -5.37 16 10 C -0.05 -0.62 6.96 37.98 0.26 -0.36 16 11 C 0.14 2.18 3.00 -68.80 -0.21 1.97 16 12 H 0.12 1.94 8.14 -51.93 -0.42 1.52 16 13 C 0.45 8.97 6.44 36.00 0.23 9.21 16 14 O -0.50 -11.23 14.31 -25.59 -0.37 -11.60 16 15 O -0.32 -7.15 9.38 -39.25 -0.37 -7.52 16 16 C 0.12 2.87 5.59 37.16 0.21 3.08 16 17 C 0.04 0.87 1.88 -155.67 -0.29 0.58 16 18 C -0.48 -13.02 8.11 -34.44 -0.28 -13.29 16 19 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 20 C 0.07 1.94 5.42 -17.82 -0.10 1.84 16 21 N -0.88 -25.39 12.72 55.43 0.71 -24.69 16 22 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 C -0.21 -4.51 9.88 -26.73 -0.26 -4.78 16 27 C -0.14 -3.36 9.25 -26.73 -0.25 -3.61 16 28 H 0.06 0.78 8.03 -51.93 -0.42 0.36 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.47 5.28 -51.93 -0.27 0.19 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.50 3.77 -51.93 -0.20 0.31 16 37 H 0.13 0.95 3.95 -51.93 -0.20 0.74 16 38 H 0.10 0.88 7.21 -51.93 -0.37 0.50 16 39 H 0.14 1.50 8.14 -51.93 -0.42 1.07 16 40 H 0.11 1.30 7.85 -51.93 -0.41 0.89 16 41 H 0.07 1.77 8.13 -51.93 -0.42 1.35 16 42 H 0.04 0.86 7.89 -51.93 -0.41 0.45 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.06 1.25 8.05 -51.93 -0.42 0.83 16 45 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 46 H 0.09 2.22 8.14 -51.93 -0.42 1.80 16 47 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 385.97 15.07 5.82 5.82 Total: -1.00 -33.54 385.97 -9.40 -42.94 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.32 Total: 2.62 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 0.35 Total: 0.55 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.24 Total: -33.36 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.95 Total: -29.50 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -2.86 SS G_CDS: -2.52 Total: -5.37 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.54 -9.40 -42.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079168479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.571 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds