Wall clock time and date at job start Sat Apr 11 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47251 * 2 1 4 4 C 1.53005 * 109.46873 * 240.00264 * 2 1 3 5 5 C 1.50698 * 109.47162 * 120.00386 * 2 1 3 6 6 O 1.21277 * 120.00105 * 353.30461 * 5 2 1 7 7 N 1.34779 * 119.99777 * 173.30699 * 5 2 1 8 8 C 1.47319 * 122.25309 * 354.79994 * 7 5 2 9 9 S 1.84075 * 102.61879 * 155.26343 * 8 7 5 10 10 C 1.84212 * 93.91215 * 33.34849 * 9 8 7 11 11 C 1.45504 * 122.43017 * 174.73994 * 7 5 2 12 12 H 1.08998 * 108.75311 * 301.88138 * 11 7 5 13 13 C 1.50696 * 108.75579 * 60.10260 * 11 7 5 14 14 O 1.20834 * 120.00112 * 2.45008 * 13 11 7 15 15 O 1.34228 * 120.00300 * 182.44953 * 13 11 7 16 16 C 1.45203 * 117.00534 * 180.02562 * 15 13 11 17 17 C 1.52998 * 109.47420 * 179.97438 * 16 15 13 18 18 C 1.50699 * 115.54976 * 34.18697 * 17 16 15 19 19 H 1.08005 * 120.00386 * 264.76239 * 18 17 16 20 20 C 1.37875 * 119.99985 * 84.75878 * 18 17 16 21 21 N 1.31511 * 120.00104 * 1.93540 * 20 18 17 22 22 Si 1.86804 * 120.00045 * 181.93919 * 20 18 17 23 23 H 1.48496 * 109.47337 * 90.00084 * 22 20 18 24 24 H 1.48499 * 109.47250 * 210.00199 * 22 20 18 25 25 H 1.48499 * 109.46950 * 329.99742 * 22 20 18 26 26 C 1.52999 * 117.49818 * 248.47958 * 17 16 15 27 27 C 1.52994 * 117.50031 * 179.85550 * 17 16 15 28 28 H 1.09000 * 109.47106 * 299.99648 * 1 2 3 29 29 H 1.08996 * 109.47580 * 59.99473 * 1 2 3 30 30 H 1.09006 * 109.47047 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47073 * 172.68406 * 3 2 1 32 32 H 1.08995 * 109.47618 * 292.68992 * 3 2 1 33 33 H 1.09000 * 109.47065 * 52.68507 * 3 2 1 34 34 H 1.09006 * 109.46996 * 299.99678 * 4 2 1 35 35 H 1.08997 * 109.47261 * 60.00054 * 4 2 1 36 36 H 1.09001 * 109.47035 * 180.02562 * 4 2 1 37 37 H 1.08999 * 110.86039 * 36.95106 * 8 7 5 38 38 H 1.08999 * 110.87333 * 273.58166 * 8 7 5 39 39 H 1.08999 * 111.05314 * 209.72934 * 10 9 8 40 40 H 1.09004 * 111.08475 * 85.76510 * 10 9 8 41 41 H 1.09004 * 109.46304 * 299.99774 * 16 15 13 42 42 H 1.08998 * 109.46815 * 59.99108 * 16 15 13 43 43 H 0.97002 * 120.00100 * 179.97438 * 21 20 18 44 44 H 1.09003 * 117.50120 * 0.02562 * 26 17 16 45 45 H 1.09004 * 117.49569 * 145.01979 * 26 17 16 46 46 H 1.08995 * 117.50469 * 214.97636 * 27 17 16 47 47 H 1.08999 * 117.49695 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 8 1.2510 -1.0642 2.0879 7 7 3.3499 -0.9527 1.3779 8 6 4.3288 -0.6467 0.3203 9 16 5.8923 -0.4354 1.2685 10 6 5.4418 -1.6940 2.5359 11 6 3.9056 -1.5328 2.5911 12 1 3.6507 -0.8915 3.4348 13 6 3.2838 -2.8881 2.8091 14 8 2.4989 -3.3294 2.0032 15 8 3.6016 -3.6050 3.8984 16 6 2.9648 -4.9020 4.0430 17 6 3.4474 -5.5660 5.3342 18 6 3.7253 -4.6298 6.4820 19 1 4.7296 -4.2734 6.6572 20 6 2.6973 -4.2283 7.3084 21 7 1.4814 -4.6919 7.1184 22 14 3.0317 -3.0255 8.6980 23 1 2.8466 -1.6367 8.2060 24 1 2.0880 -3.2847 9.8149 25 1 4.4262 -3.1989 9.1780 26 6 4.3346 -6.8055 5.2022 27 6 2.8850 -6.9485 5.6705 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1221 1.4452 0.1309 32 1 1.7874 1.9172 -0.9481 33 1 1.5738 1.9926 0.8173 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1299 -0.7216 -1.2491 37 1 4.0640 0.2744 -0.1989 38 1 4.4122 -1.4750 -0.3832 39 1 5.8950 -1.4594 3.4990 40 1 5.7188 -2.6963 2.2089 41 1 1.8831 -4.7731 4.0826 42 1 3.2248 -5.5313 3.1919 43 1 0.7583 -4.4097 7.7001 44 1 4.5748 -7.1477 4.1955 45 1 5.1196 -6.9440 5.9457 46 1 2.7164 -7.1812 6.7219 47 1 2.1709 -7.3848 4.9721 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079168479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:42 Heat of formation + Delta-G solvation = -89.301020 kcal Electronic energy + Delta-G solvation = -29305.775590 eV Core-core repulsion = 25388.142063 eV Total energy + Delta-G solvation = -3917.633527 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.27951 -40.97444 -38.69183 -37.60234 -37.10528 -36.73928 -34.01223 -32.70512 -29.05837 -28.81258 -28.31520 -27.87691 -27.34079 -25.92436 -23.78339 -22.97979 -21.61065 -21.24456 -20.26511 -19.03998 -18.66602 -18.25587 -17.79937 -17.32660 -17.12811 -16.65871 -16.44772 -16.03114 -15.75866 -15.62740 -15.37895 -14.91385 -14.82779 -14.75913 -14.23383 -14.09813 -13.77986 -13.61137 -13.45981 -13.20235 -13.12692 -13.00331 -12.92798 -12.88983 -12.85827 -12.64628 -12.40043 -12.25498 -12.14222 -11.99313 -11.68805 -11.65534 -11.52859 -11.27296 -10.94478 -10.81121 -10.48391 -10.17640 -10.01080 -8.99103 -8.12602 -6.22924 0.44195 0.72917 1.10014 1.15796 1.39658 1.41248 1.50438 1.51315 1.93561 2.41826 2.92276 3.18039 3.26169 3.32898 3.52593 3.68819 3.79064 3.81283 3.88211 4.08182 4.11458 4.14964 4.28875 4.33072 4.35850 4.42137 4.60263 4.62830 4.64987 4.73261 4.77354 4.85198 4.88949 4.90732 4.95256 4.97031 5.12428 5.15901 5.27633 5.31454 5.32668 5.57327 5.65625 5.74947 5.92785 6.33144 6.70516 6.82736 6.93485 7.45335 8.96534 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012821 B = 0.003663 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.430705 B = 7643.009523 C = 7909.322477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.077 4.077 3 C -0.142 4.142 4 C -0.156 4.156 5 C 0.530 3.470 6 O -0.566 6.566 7 N -0.602 5.602 8 C 0.139 3.861 9 S -0.245 6.245 10 C -0.052 4.052 11 C 0.146 3.854 12 H 0.115 0.885 13 C 0.441 3.559 14 O -0.530 6.530 15 O -0.330 6.330 16 C 0.132 3.868 17 C 0.001 3.999 18 C -0.487 4.487 19 H 0.061 0.939 20 C 0.020 3.980 21 N -0.915 5.915 22 Si 0.949 3.051 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.258 1.258 26 C -0.175 4.175 27 C -0.150 4.150 28 H 0.045 0.955 29 H 0.099 0.901 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.054 0.946 34 H 0.041 0.959 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.162 0.838 38 H 0.116 0.884 39 H 0.152 0.848 40 H 0.111 0.889 41 H 0.024 0.976 42 H 0.056 0.944 43 H 0.257 0.743 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.068 0.932 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.515 12.573 -19.221 24.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.080 4.080 3 C -0.199 4.199 4 C -0.214 4.214 5 C 0.319 3.681 6 O -0.442 6.442 7 N -0.339 5.339 8 C -0.092 4.092 9 S -0.018 6.018 10 C -0.201 4.201 11 C 0.038 3.962 12 H 0.132 0.868 13 C 0.282 3.718 14 O -0.419 6.419 15 O -0.244 6.244 16 C 0.058 3.942 17 C 0.000 4.000 18 C -0.525 4.525 19 H 0.079 0.921 20 C -0.179 4.179 21 N -0.554 5.554 22 Si 0.774 3.226 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.182 1.182 26 C -0.211 4.211 27 C -0.187 4.187 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.122 0.878 36 H 0.106 0.894 37 H 0.179 0.821 38 H 0.134 0.866 39 H 0.170 0.830 40 H 0.130 0.870 41 H 0.043 0.957 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.112 0.888 45 H 0.107 0.893 46 H 0.087 0.913 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.673 12.955 -19.053 24.284 hybrid contribution -1.801 -0.847 1.483 2.482 sum 5.872 12.108 -17.570 22.131 Atomic orbital electron populations 1.21685 0.92143 1.01609 1.02979 1.20888 0.97877 0.97660 0.91582 1.22038 1.01693 0.91300 1.04820 1.22341 1.03142 1.00019 0.95856 1.21578 0.79872 0.77540 0.89087 1.90761 1.55481 1.52117 1.45882 1.48279 1.07754 1.62607 1.15224 1.25269 0.85313 1.07594 0.91012 1.88308 1.27237 1.53933 1.32287 1.24434 0.89787 1.02035 1.03823 1.20857 0.95076 0.88924 0.91339 0.86786 1.24440 0.79726 0.88334 0.79337 1.90582 1.33578 1.71474 1.46288 1.86573 1.64130 1.31906 1.41768 1.22409 0.94497 0.79771 0.97522 1.18906 1.00877 0.87604 0.92600 1.20529 0.94371 1.27184 1.10369 0.92085 1.25713 0.94936 0.97536 0.99761 1.70121 1.00919 1.44657 1.39675 0.85696 0.78583 0.79306 0.78989 1.20776 1.21291 1.18185 1.23145 0.93329 1.03361 1.01313 1.22433 0.95340 1.01160 0.99817 0.93555 0.88205 0.94593 0.90704 0.87567 0.92659 0.93949 0.87771 0.89416 0.82142 0.86648 0.83014 0.87009 0.95720 0.92550 0.93432 0.88750 0.89274 0.91293 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 7.79 71.98 0.56 -2.18 16 2 C -0.08 -1.51 0.75 -52.93 -0.04 -1.55 16 3 C -0.14 -1.77 8.23 71.98 0.59 -1.18 16 4 C -0.16 -2.19 8.07 71.98 0.58 -1.61 16 5 C 0.53 16.34 5.66 87.66 0.50 16.83 16 6 O -0.57 -24.55 14.44 16.43 0.24 -24.32 16 7 N -0.60 -15.96 2.74 -808.23 -2.21 -18.18 16 8 C 0.14 2.28 5.24 127.61 0.67 2.95 16 9 S -0.24 -4.43 23.43 -56.49 -1.32 -5.76 16 10 C -0.05 -1.18 6.96 72.51 0.50 -0.68 16 11 C 0.15 4.51 3.00 44.96 0.13 4.64 16 12 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 13 C 0.44 18.33 6.44 71.23 0.46 18.79 16 14 O -0.53 -24.75 14.31 28.48 0.41 -24.35 16 15 O -0.33 -15.28 9.38 -51.40 -0.48 -15.76 16 16 C 0.13 6.51 5.59 71.98 0.40 6.92 16 17 C 0.00 0.03 1.88 -52.93 -0.10 -0.07 16 18 C -0.49 -26.64 8.11 25.60 0.21 -26.44 16 19 H 0.06 3.27 7.81 -2.91 -0.02 3.24 16 20 C 0.02 1.12 5.42 84.65 0.46 1.58 16 21 N -0.92 -54.72 12.72 21.45 0.27 -54.44 16 22 Si 0.95 44.46 29.54 68.60 2.03 46.48 16 23 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 24 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 25 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 26 C -0.17 -7.25 9.88 30.59 0.30 -6.95 16 27 C -0.15 -7.10 9.25 30.59 0.28 -6.82 16 28 H 0.05 1.15 8.03 -2.39 -0.02 1.14 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.07 0.78 5.28 -2.39 -0.01 0.76 16 32 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.09 0.90 3.77 -2.39 -0.01 0.90 16 37 H 0.16 1.64 3.95 -2.39 -0.01 1.63 16 38 H 0.12 1.63 7.21 -2.39 -0.02 1.61 16 39 H 0.15 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.11 2.49 7.85 -2.38 -0.02 2.47 16 41 H 0.02 1.39 8.13 -2.39 -0.02 1.37 16 42 H 0.06 2.51 7.89 -2.39 -0.02 2.50 16 43 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 44 H 0.09 3.37 8.05 -2.39 -0.02 3.35 16 45 H 0.09 3.57 8.14 -2.38 -0.02 3.55 16 46 H 0.07 3.52 8.14 -2.39 -0.02 3.50 16 47 H 0.07 3.21 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -77.89 385.97 5.41 -72.49 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.97 Total: 19.59 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 5.51 Total: 4.24 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -1.94 Total: -72.62 kcal Atomic # 8 Polarization: -64.59 SS G_CDS: 0.16 Total: -64.42 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: -4.43 SS G_CDS: -1.32 Total: -5.76 kcal Total: -77.89 5.41 -72.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079168479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.814 kcal (2) G-P(sol) polarization free energy of solvation -77.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds