Wall clock time and date at job start Sat Apr 11 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46996 * 2 1 4 4 C 1.52995 * 109.47278 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47188 * 180.02562 * 4 3 2 6 6 O 1.21275 * 120.00269 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00006 * 180.02562 * 5 4 3 8 8 C 1.47604 * 122.43324 * 359.97438 * 7 5 4 9 9 S 1.84131 * 102.66363 * 155.23974 * 8 7 5 10 10 C 1.84216 * 93.88752 * 33.39282 * 9 8 7 11 11 C 1.45504 * 122.43025 * 179.97438 * 7 5 4 12 12 H 1.08995 * 108.62681 * 301.93158 * 11 7 5 13 13 C 1.50699 * 108.75307 * 60.08750 * 11 7 5 14 14 O 1.20817 * 119.99877 * 29.88252 * 13 11 7 15 15 O 1.34229 * 119.99643 * 209.88832 * 13 11 7 16 16 C 1.45206 * 116.99746 * 177.00953 * 15 13 11 17 17 C 1.52998 * 109.46919 * 181.94953 * 16 15 13 18 18 C 1.50695 * 115.55187 * 39.48730 * 17 16 15 19 19 H 1.08006 * 119.99954 * 267.39918 * 18 17 16 20 20 C 1.37871 * 119.99963 * 87.40258 * 18 17 16 21 21 N 1.31520 * 120.00223 * 181.06723 * 20 18 17 22 22 Si 1.86801 * 120.00178 * 1.06843 * 20 18 17 23 23 H 1.48494 * 109.47186 * 84.84816 * 22 20 18 24 24 H 1.48497 * 109.46996 * 204.85193 * 22 20 18 25 25 H 1.48503 * 109.46971 * 324.84961 * 22 20 18 26 26 C 1.53002 * 117.49737 * 253.77766 * 17 16 15 27 27 C 1.52994 * 60.00069 * 252.51212 * 26 17 16 28 28 H 1.09000 * 109.47070 * 60.00056 * 1 2 3 29 29 H 1.09000 * 109.47123 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47696 * 300.00018 * 1 2 3 31 31 H 1.08997 * 109.47639 * 240.00535 * 2 1 3 32 32 H 1.09005 * 109.47266 * 119.99501 * 2 1 3 33 33 H 1.09003 * 109.47166 * 59.99841 * 3 2 1 34 34 H 1.09000 * 109.47166 * 299.99886 * 3 2 1 35 35 H 1.09003 * 109.46780 * 60.00060 * 4 3 2 36 36 H 1.09000 * 109.47301 * 300.00258 * 4 3 2 37 37 H 1.09003 * 110.77156 * 273.50337 * 8 7 5 38 38 H 1.09006 * 110.77181 * 36.92159 * 8 7 5 39 39 H 1.08997 * 111.04919 * 209.75283 * 10 9 8 40 40 H 1.09000 * 111.05425 * 85.81450 * 10 9 8 41 41 H 1.08996 * 109.47048 * 301.94784 * 16 15 13 42 42 H 1.08998 * 109.46995 * 61.94963 * 16 15 13 43 43 H 0.96993 * 120.00424 * 179.97438 * 21 20 18 44 44 H 1.09003 * 117.49745 * 0.02562 * 26 17 16 45 45 H 1.09003 * 117.50070 * 145.01937 * 26 17 16 46 46 H 1.08998 * 117.50108 * 252.50908 * 27 26 17 47 47 H 1.09006 * 117.49700 * 107.49053 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0722 2.8635 0.0013 6 8 3.2841 3.7853 0.0008 7 7 5.3973 3.1098 0.0014 8 6 6.4032 2.0297 0.0015 9 16 7.8722 2.8461 -0.7508 10 6 7.4850 4.4940 -0.0242 11 6 5.9399 4.4598 0.0014 12 1 5.5630 4.9866 -0.8751 13 6 5.4603 5.1748 1.2383 14 8 5.2319 4.5500 2.2469 15 8 5.2867 6.5057 1.2194 16 6 4.7591 7.1188 2.4252 17 6 4.5859 8.6221 2.1991 18 6 4.0692 9.0197 0.8405 19 1 4.7626 9.2563 0.0470 20 6 2.7112 9.0815 0.6104 21 7 2.2602 9.4081 -0.5811 22 14 1.5117 8.7013 1.9911 23 1 1.2888 9.9239 2.8038 24 1 0.2205 8.2482 1.4142 25 1 2.0722 7.6295 2.8527 26 6 5.5890 9.5585 2.8758 27 6 4.1528 9.4712 3.3959 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9336 0.9287 -0.8892 36 1 3.9329 0.9289 0.8908 37 1 6.6210 1.7043 1.0188 38 1 6.0705 1.1914 -0.6108 39 1 7.8480 5.2988 -0.6634 40 1 7.8917 4.5832 0.9831 41 1 3.7938 6.6741 2.6665 42 1 5.4520 6.9530 3.2502 43 1 1.3049 9.4512 -0.7431 44 1 6.3726 9.1035 3.4817 45 1 5.8755 10.4624 2.3382 46 1 3.4944 10.3176 3.2006 47 1 3.9913 8.9588 4.3444 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079168503.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:46 Heat of formation + Delta-G solvation = -111.179474 kcal Electronic energy + Delta-G solvation = -28592.759618 eV Core-core repulsion = 24674.177370 eV Total energy + Delta-G solvation = -3918.582248 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.13543 -40.79811 -38.94544 -37.70403 -36.99218 -36.32164 -34.27381 -33.22312 -31.13053 -29.21469 -28.47639 -27.45695 -26.32403 -24.86605 -23.40963 -22.62349 -21.77263 -21.12608 -20.36689 -19.27399 -18.83318 -18.43107 -18.06841 -17.48893 -17.37633 -16.86932 -16.68344 -16.45387 -15.83759 -15.55807 -15.12728 -15.04720 -14.82845 -14.66079 -14.57894 -14.48310 -14.21078 -13.87345 -13.82447 -13.46212 -13.24170 -13.15241 -13.13331 -12.84462 -12.37117 -12.28381 -12.23824 -12.12451 -12.09192 -11.92900 -11.78923 -11.63419 -11.49635 -11.45923 -11.08407 -11.00176 -10.70331 -10.37272 -10.17419 -8.99090 -8.33626 -6.37710 0.43527 0.68083 0.89363 1.23027 1.27605 1.29968 1.36134 1.46986 1.86925 2.29178 2.92927 3.01017 3.04708 3.39670 3.46359 3.74237 3.81314 3.92329 3.94854 4.04075 4.13524 4.20477 4.22097 4.26736 4.30272 4.31505 4.32697 4.42407 4.53847 4.55458 4.65688 4.77356 4.83516 4.86187 4.92786 4.97123 5.06208 5.10747 5.24446 5.34333 5.41105 5.46195 5.47689 5.63301 5.87849 6.25891 6.59497 6.70719 6.86767 7.29963 8.82223 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009049 B = 0.004221 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.406659 B = 6631.257065 C = 8772.840722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.113 4.113 3 C -0.110 4.110 4 C -0.121 4.121 5 C 0.514 3.486 6 O -0.576 6.576 7 N -0.605 5.605 8 C 0.151 3.849 9 S -0.240 6.240 10 C -0.054 4.054 11 C 0.143 3.857 12 H 0.106 0.894 13 C 0.451 3.549 14 O -0.533 6.533 15 O -0.336 6.336 16 C 0.114 3.886 17 C -0.043 4.043 18 C -0.468 4.468 19 H 0.039 0.961 20 C 0.025 3.975 21 N -0.944 5.944 22 Si 0.927 3.073 23 H -0.249 1.249 24 H -0.304 1.304 25 H -0.257 1.257 26 C -0.148 4.148 27 C -0.187 4.187 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.049 0.951 35 H 0.136 0.864 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.159 0.841 39 H 0.152 0.848 40 H 0.114 0.886 41 H 0.037 0.963 42 H 0.077 0.923 43 H 0.264 0.736 44 H 0.110 0.890 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.223 -22.014 2.739 24.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.151 4.151 3 C -0.148 4.148 4 C -0.161 4.161 5 C 0.304 3.696 6 O -0.453 6.453 7 N -0.342 5.342 8 C -0.081 4.081 9 S -0.013 6.013 10 C -0.203 4.203 11 C 0.035 3.965 12 H 0.123 0.877 13 C 0.293 3.707 14 O -0.424 6.424 15 O -0.250 6.250 16 C 0.040 3.960 17 C -0.044 4.044 18 C -0.506 4.506 19 H 0.058 0.942 20 C -0.172 4.172 21 N -0.584 5.584 22 Si 0.753 3.247 23 H -0.173 1.173 24 H -0.231 1.231 25 H -0.181 1.181 26 C -0.185 4.185 27 C -0.224 4.224 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.154 0.846 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.177 0.823 39 H 0.170 0.830 40 H 0.132 0.868 41 H 0.055 0.945 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.128 0.872 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.480 -22.053 2.215 24.107 hybrid contribution -2.092 1.013 1.053 2.551 sum 7.389 -21.040 3.268 22.538 Atomic orbital electron populations 1.21809 0.96260 1.02231 1.01257 1.21488 0.95707 0.94253 1.03624 1.21406 0.93497 0.98393 1.01508 1.21814 0.97277 0.89455 1.07506 1.21862 0.80002 0.94032 0.73718 1.90836 1.55658 1.48748 1.50091 1.48511 1.06721 1.04309 1.74615 1.24716 0.85617 0.91882 1.05835 1.88339 1.36227 1.08258 1.68511 1.24430 0.89416 0.99332 1.07071 1.20848 0.96496 0.84733 0.94459 0.87656 1.24377 0.74042 0.81785 0.90520 1.90549 1.48907 1.67872 1.35045 1.86616 1.74236 1.21594 1.42538 1.22742 0.96655 0.93272 0.83341 1.19252 1.04166 0.87711 0.93297 1.20243 0.91370 1.44180 0.94792 0.94237 1.25687 1.00011 0.94271 0.97278 1.70003 1.14398 1.50613 1.23363 0.86109 0.77929 0.80093 0.80521 1.17336 1.23134 1.18127 1.22993 0.91478 1.01628 1.02395 1.23081 0.99420 1.02659 0.97254 0.93432 0.91038 0.93864 0.89798 0.90418 0.94245 0.93187 0.84575 0.85725 0.86387 0.82305 0.83021 0.86755 0.94513 0.90449 0.92748 0.87154 0.89285 0.89707 0.87857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.91 71.98 0.71 -1.82 16 2 C -0.11 -1.61 5.93 30.60 0.18 -1.42 16 3 C -0.11 -2.39 4.50 30.59 0.14 -2.25 16 4 C -0.12 -2.11 4.49 29.85 0.13 -1.98 16 5 C 0.51 15.33 7.21 87.66 0.63 15.96 16 6 O -0.58 -25.06 15.32 -3.01 -0.05 -25.11 16 7 N -0.60 -15.42 2.68 -807.37 -2.16 -17.58 16 8 C 0.15 2.18 7.21 127.56 0.92 3.10 16 9 S -0.24 -4.15 23.44 -56.49 -1.32 -5.48 16 10 C -0.05 -1.14 7.03 72.51 0.51 -0.63 16 11 C 0.14 4.33 2.94 44.96 0.13 4.46 16 12 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 13 C 0.45 17.96 5.73 71.24 0.41 18.37 16 14 O -0.53 -22.48 16.12 21.99 0.35 -22.12 16 15 O -0.34 -15.50 9.60 -51.41 -0.49 -15.99 16 16 C 0.11 5.17 5.40 71.98 0.39 5.55 16 17 C -0.04 -2.04 1.27 -52.93 -0.07 -2.11 16 18 C -0.47 -27.47 8.83 25.60 0.23 -27.25 16 19 H 0.04 2.57 8.06 -2.91 -0.02 2.54 16 20 C 0.03 1.53 5.47 84.65 0.46 1.99 16 21 N -0.94 -61.54 13.96 21.45 0.30 -61.24 16 22 Si 0.93 47.83 24.94 68.60 1.71 49.54 16 23 H -0.25 -11.65 6.98 99.48 0.69 -10.96 16 24 H -0.30 -16.07 7.11 99.48 0.71 -15.37 16 25 H -0.26 -12.81 5.61 99.48 0.56 -12.25 16 26 C -0.15 -5.60 9.88 30.59 0.30 -5.30 16 27 C -0.19 -7.54 7.60 30.59 0.23 -7.31 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.04 1.09 8.10 -2.39 -0.02 1.07 16 34 H 0.05 1.29 8.10 -2.39 -0.02 1.28 16 35 H 0.14 1.29 7.63 -2.39 -0.02 1.27 16 36 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.16 1.08 7.13 -2.38 -0.02 1.06 16 39 H 0.15 2.76 8.14 -2.39 -0.02 2.75 16 40 H 0.11 2.27 7.85 -2.39 -0.02 2.25 16 41 H 0.04 1.83 6.48 -2.39 -0.02 1.82 16 42 H 0.08 3.00 7.94 -2.39 -0.02 2.98 16 43 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 44 H 0.11 3.39 8.08 -2.39 -0.02 3.37 16 45 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 46 H 0.08 3.60 6.99 -2.39 -0.02 3.58 16 47 H 0.10 3.58 8.14 -2.38 -0.02 3.56 16 Total: -1.00 -84.58 393.41 4.44 -80.14 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.79 Total: 18.47 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 5.31 Total: -0.64 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -1.86 Total: -78.82 kcal Atomic # 8 Polarization: -63.03 SS G_CDS: -0.19 Total: -63.22 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 1.71 Total: 49.54 kcal Atomic # 16 Polarization: -4.15 SS G_CDS: -1.32 Total: -5.48 kcal Total: -84.58 4.44 -80.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079168503.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.044 kcal (2) G-P(sol) polarization free energy of solvation -84.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds